Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.82156 * 2 1 4 4 C 1.54385 * 109.90179 * 120.92804 * 2 1 3 5 5 C 1.55567 * 102.26991 * 140.91145 * 4 2 1 6 6 H 1.09002 * 111.13044 * 83.74498 * 5 4 2 7 7 C 1.50700 * 111.22403 * 207.98117 * 5 4 2 8 8 O 1.21284 * 120.00147 * 16.22143 * 7 5 4 9 9 N 1.34777 * 120.00039 * 196.21947 * 7 5 4 10 10 C 1.46929 * 120.63131 * 4.54559 * 9 7 5 11 11 C 1.52760 * 109.00761 * 233.58643 * 10 9 7 12 12 C 1.53041 * 109.38566 * 305.58662 * 11 10 9 13 13 C 1.52997 * 109.46083 * 181.26254 * 12 11 10 14 14 C 1.50702 * 109.47351 * 64.93375 * 13 12 11 15 15 H 1.07998 * 119.99815 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99996 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00002 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00100 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47214 * 89.99921 * 18 16 14 20 20 H 1.48503 * 109.46853 * 209.99981 * 18 16 14 21 21 H 1.48502 * 109.47096 * 329.99634 * 18 16 14 22 22 C 1.53040 * 109.53638 * 61.24135 * 12 11 10 23 23 C 1.46931 * 120.63311 * 184.82767 * 9 7 5 24 24 C 1.54941 * 100.83081 * 325.88647 * 5 4 2 25 25 O 1.43238 * 109.83232 * 239.11049 * 2 1 3 26 26 H 1.08997 * 109.47049 * 179.43468 * 1 2 3 27 27 H 1.08997 * 109.47340 * 299.43557 * 1 2 3 28 28 H 1.08998 * 109.47154 * 59.43852 * 1 2 3 29 29 H 1.08992 * 110.85293 * 259.10263 * 4 2 1 30 30 H 1.09000 * 110.84891 * 22.73071 * 4 2 1 31 31 H 1.09000 * 109.58264 * 353.41892 * 10 9 7 32 32 H 1.08996 * 109.58822 * 113.84561 * 10 9 7 33 33 H 1.09006 * 109.56429 * 185.54740 * 11 10 9 34 34 H 1.08997 * 109.39101 * 65.51560 * 11 10 9 35 35 H 1.08994 * 109.44666 * 301.22899 * 12 11 10 36 36 H 1.09005 * 109.47323 * 184.93197 * 13 12 11 37 37 H 1.09000 * 109.47077 * 304.93002 * 13 12 11 38 38 H 0.97005 * 120.00496 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.49568 * 178.68844 * 22 12 11 40 40 H 1.09000 * 109.52632 * 58.60465 * 22 12 11 41 41 H 1.08992 * 109.58272 * 246.15617 * 23 9 7 42 42 H 1.09001 * 109.58064 * 6.43423 * 23 9 7 43 43 H 1.09001 * 110.30466 * 277.47264 * 24 5 4 44 44 H 1.08998 * 110.31274 * 155.40367 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0556 -0.7461 1.2452 5 6 3.2776 -1.5216 0.6748 6 1 4.1657 -0.8903 0.6475 7 6 3.5356 -2.7842 1.4561 8 8 2.6786 -3.2290 2.1900 9 7 4.7187 -3.4191 1.3392 10 6 5.8020 -2.8410 0.5324 11 6 6.2737 -3.8790 -0.4842 12 6 6.6532 -5.1693 0.2461 13 6 7.1557 -6.1996 -0.7672 14 6 8.4330 -5.7049 -1.3954 15 1 8.8450 -4.7507 -1.1017 16 6 9.0757 -6.4703 -2.3452 17 7 10.1901 -6.0383 -2.8938 18 14 8.3635 -8.1209 -2.8528 19 1 7.4346 -7.9289 -3.9954 20 1 9.4645 -9.0316 -3.2575 21 1 7.6255 -8.7143 -1.7090 22 6 5.4268 -5.7254 0.9733 23 6 4.9475 -4.7056 2.0111 24 6 2.7766 -1.8427 -0.7558 25 8 2.0160 -0.6917 -1.1563 26 1 -0.3633 -1.0276 -0.0101 27 1 -0.3634 0.5050 0.8950 28 1 -0.3633 0.5225 -0.8849 29 1 2.3687 -0.0419 2.0160 30 1 1.3042 -1.4356 1.6302 31 1 5.4360 -1.9582 0.0082 32 1 6.6333 -2.5649 1.1811 33 1 7.1417 -3.4960 -1.0210 34 1 5.4701 -4.0842 -1.1913 35 1 7.4401 -4.9584 0.9702 36 1 7.3431 -7.1463 -0.2604 37 1 6.4024 -6.3450 -1.5415 38 1 10.6421 -6.5766 -3.5623 39 1 5.6920 -6.6566 1.4740 40 1 4.6305 -5.9135 0.2532 41 1 5.7076 -4.5846 2.7828 42 1 4.0185 -5.0513 2.4643 43 1 2.1431 -2.7296 -0.7446 44 1 3.6215 -1.9904 -1.4284 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335385715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = -101.101244 kcal Electronic energy + Delta-G solvation = -22929.043832 eV Core-core repulsion = 19652.418454 eV Total energy + Delta-G solvation = -3276.625378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72880 -39.10330 -37.41441 -34.16995 -32.72480 -32.31519 -31.83739 -30.65680 -28.63850 -26.38892 -25.06958 -23.44375 -22.75430 -21.35654 -21.20842 -19.76538 -18.59187 -17.77017 -16.80318 -16.68786 -16.08269 -15.38325 -15.04341 -14.47863 -14.39216 -14.07794 -13.90423 -13.82698 -13.27593 -13.06487 -13.02124 -12.78623 -12.69082 -12.33712 -12.25312 -11.98653 -11.51498 -11.44157 -11.24841 -11.13128 -11.07287 -10.90400 -10.69558 -10.39116 -9.92654 -9.91022 -9.76210 -9.64979 -9.52838 -9.10912 -8.57293 -8.51278 -6.08121 -4.05868 2.49902 2.94975 3.27942 3.36142 3.39218 3.59494 4.13641 4.41233 4.42160 4.60891 4.72620 4.82133 4.91898 5.03091 5.13226 5.24239 5.24478 5.34638 5.37925 5.39513 5.45904 5.46482 5.55914 5.60450 5.69194 5.72258 5.84490 5.86179 5.94208 6.00873 6.20540 6.23345 6.35863 6.52735 6.72762 6.77303 6.79475 6.89976 7.21894 7.36936 7.43209 7.75751 8.11841 8.49067 8.95960 9.55035 11.05011 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003844 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.486158 B = 7283.199142 C = 7754.375360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 H 0.082 0.918 4 C -0.134 4.134 5 C -0.150 4.150 6 H 0.110 0.890 7 C 0.526 3.474 8 O -0.547 6.547 9 N -0.603 5.603 10 C 0.100 3.900 11 C -0.122 4.122 12 C -0.072 4.072 13 C -0.009 4.009 14 C -0.517 4.517 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.132 4.132 23 C 0.112 3.888 24 C 0.069 3.931 25 O -0.374 6.374 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.016 0.984 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.953 10.611 7.976 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.018 3.982 3 H 0.099 0.901 4 C -0.172 4.172 5 C -0.171 4.171 6 H 0.128 0.872 7 C 0.314 3.686 8 O -0.425 6.425 9 N -0.335 5.335 10 C -0.022 4.022 11 C -0.160 4.160 12 C -0.091 4.091 13 C -0.046 4.046 14 C -0.555 4.555 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.170 4.170 23 C -0.010 4.010 24 C -0.008 4.008 25 O -0.294 6.294 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.296 10.383 8.031 20.156 hybrid contribution 0.013 -1.001 -0.236 1.029 sum -15.283 9.382 7.795 19.554 Atomic orbital electron populations 1.22137 0.94767 1.02816 1.02253 1.22760 0.94581 0.96293 0.84613 0.90055 1.23184 0.96876 0.99318 0.97813 1.23086 1.00974 0.96191 0.96874 0.87202 1.20072 0.81585 0.85021 0.81940 1.90661 1.44822 1.67527 1.39508 1.48190 1.13365 1.22253 1.49694 1.21943 0.89336 0.97042 0.93906 1.21855 1.01993 0.95221 0.96885 1.21005 0.94920 0.95534 0.97607 1.19616 0.96598 0.94420 0.94010 1.21122 1.06329 1.06372 1.21677 0.90847 1.25022 0.94672 0.97826 0.95944 1.69906 1.17583 1.38397 1.28368 0.86816 0.78845 0.84557 0.79271 1.20366 1.21473 1.19084 1.22068 0.99153 0.97815 0.98014 1.21667 1.01655 0.82681 0.94964 1.23245 0.95555 0.89364 0.92605 1.88457 1.70629 1.40301 1.29965 0.92037 0.91467 0.91885 0.89761 0.88640 0.90224 0.91124 0.88972 0.92272 0.91663 0.96595 0.97108 0.92762 0.91026 0.92068 0.91601 0.89639 0.91661 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.45 37.16 0.35 -1.01 16 2 C 0.07 0.72 4.15 -26.00 -0.11 0.61 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.13 -1.33 5.86 -24.64 -0.14 -1.47 16 5 C -0.15 -1.63 2.44 -89.38 -0.22 -1.85 16 6 H 0.11 1.02 6.63 -51.93 -0.34 0.67 16 7 C 0.53 7.21 6.96 -10.99 -0.08 7.14 16 8 O -0.55 -9.09 15.16 5.55 0.08 -9.00 16 9 N -0.60 -8.10 2.98 -173.03 -0.52 -8.61 16 10 C 0.10 1.25 6.26 -3.93 -0.02 1.23 16 11 C -0.12 -1.93 5.17 -26.83 -0.14 -2.07 16 12 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 14 C -0.52 -13.82 8.94 -34.44 -0.31 -14.13 16 15 H 0.07 2.08 7.30 -52.49 -0.38 1.70 16 16 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 17 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 18 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 22 C -0.13 -2.01 5.36 -26.61 -0.14 -2.15 16 23 C 0.11 1.55 6.42 -3.71 -0.02 1.52 16 24 C 0.07 0.79 7.16 38.18 0.27 1.06 16 25 O -0.37 -4.50 11.02 -35.23 -0.39 -4.89 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.09 6.91 -51.93 -0.36 0.73 16 31 H 0.08 0.83 5.29 -51.93 -0.27 0.55 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.63 6.91 -51.93 -0.36 1.28 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 37 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.21 7.03 -51.93 -0.37 0.85 16 43 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 44 H 0.10 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -31.09 339.23 -8.05 -39.14 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.50 Total: -0.94 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.95 Total: -11.12 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.26 Total: -34.91 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.30 Total: -13.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.09 -8.05 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335385715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.962 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds