Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.32921 * 2 1 4 4 C 1.54486 * 110.37050 * 237.63386 * 2 1 3 5 5 C 1.54510 * 104.06135 * 217.18758 * 4 2 1 6 6 C 1.54487 * 104.06095 * 0.02562 * 5 4 2 7 7 H 1.08993 * 110.37257 * 265.14520 * 6 5 4 8 8 C 1.50698 * 110.36834 * 142.80773 * 6 5 4 9 9 O 1.21283 * 120.00185 * 244.99420 * 8 6 5 10 10 N 1.34777 * 119.99878 * 65.00231 * 8 6 5 11 11 C 1.46923 * 120.63274 * 359.71745 * 10 8 6 12 12 C 1.52768 * 109.00633 * 233.58584 * 11 10 8 13 13 C 1.53042 * 109.38292 * 305.58482 * 12 11 10 14 14 C 1.53003 * 109.45832 * 181.26098 * 13 12 11 15 15 C 1.50702 * 109.46716 * 64.93484 * 14 13 12 16 16 H 1.07996 * 120.00399 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99590 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00255 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99802 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46872 * 90.00388 * 19 17 15 21 21 H 1.48499 * 109.46897 * 210.00147 * 19 17 15 22 22 H 1.48495 * 109.47343 * 330.00259 * 19 17 15 23 23 C 1.53045 * 109.53663 * 61.24115 * 13 12 11 24 24 C 1.46931 * 120.62812 * 179.97438 * 10 8 6 25 25 O 1.44419 * 104.80357 * 23.97821 * 6 5 4 26 26 H 1.08993 * 109.46921 * 299.20063 * 1 2 3 27 27 H 1.08994 * 109.47117 * 59.20192 * 1 2 3 28 28 H 1.09003 * 109.46728 * 179.20194 * 1 2 3 29 29 H 1.09004 * 110.51003 * 98.54510 * 4 2 1 30 30 H 1.08993 * 110.50905 * 335.83278 * 4 2 1 31 31 H 1.08991 * 110.51125 * 241.35645 * 5 4 2 32 32 H 1.08995 * 110.50842 * 118.64477 * 5 4 2 33 33 H 1.09000 * 109.58472 * 353.41418 * 11 10 8 34 34 H 1.08999 * 109.58599 * 113.84750 * 11 10 8 35 35 H 1.09003 * 109.56050 * 185.55353 * 12 11 10 36 36 H 1.08998 * 109.38882 * 65.51226 * 12 11 10 37 37 H 1.09000 * 109.45828 * 301.21823 * 13 12 11 38 38 H 1.08998 * 109.46779 * 184.93163 * 14 13 12 39 39 H 1.08993 * 109.46839 * 304.93293 * 14 13 12 40 40 H 0.96990 * 120.00164 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.49482 * 178.67952 * 23 13 12 42 42 H 1.08997 * 109.49192 * 58.58560 * 23 13 12 43 43 H 1.09000 * 109.58243 * 246.15218 * 24 10 8 44 44 H 1.08996 * 109.59025 * 6.57696 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0222 0.0000 4 6 2.0678 -0.7753 -1.2233 5 6 3.3179 -1.5064 -0.6845 6 6 3.3870 -1.0868 0.8007 7 1 4.0520 -0.2319 0.9229 8 6 3.8527 -2.2408 1.6506 9 8 3.1073 -2.7264 2.4750 10 7 5.0975 -2.7333 1.4947 11 6 6.0099 -2.1596 0.4962 12 6 6.5275 -3.2787 -0.4058 13 6 7.1503 -4.3791 0.4565 14 6 7.6974 -5.4862 -0.4468 15 6 8.8292 -4.9415 -1.2797 16 1 9.1280 -3.9090 -1.1755 17 6 9.4831 -5.7615 -2.1747 18 7 9.1188 -7.0188 -2.3020 19 14 10.8854 -5.0862 -3.2076 20 1 12.1680 -5.2713 -2.4823 21 1 10.9400 -5.8110 -4.5025 22 1 10.6632 -3.6397 -3.4589 23 6 6.0865 -4.9616 1.3898 24 6 5.5661 -3.8577 2.3163 25 8 2.0324 -0.7233 1.1450 26 1 -0.3633 0.5013 0.8970 27 1 -0.3633 0.5261 -0.8827 28 1 -0.3633 -1.0276 -0.0143 29 1 2.3430 -0.0859 -2.0215 30 1 1.3276 -1.4935 -1.5757 31 1 4.2109 -1.1785 -1.2164 32 1 3.1956 -2.5860 -0.7707 33 1 5.4767 -1.4240 -0.1060 34 1 6.8502 -1.6825 1.0005 35 1 7.2799 -2.8803 -1.0865 36 1 5.6991 -3.6923 -0.9809 37 1 7.9632 -3.9595 1.0492 38 1 8.0619 -6.3094 0.1676 39 1 6.9041 -5.8455 -1.1022 40 1 9.5786 -7.5955 -2.9319 41 1 6.5250 -5.7610 1.9871 42 1 5.2619 -5.3592 0.7982 43 1 6.3695 -3.5214 2.9717 44 1 4.7402 -4.2420 2.9148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -99.119628 kcal Electronic energy + Delta-G solvation = -22985.225069 eV Core-core repulsion = 19708.685620 eV Total energy + Delta-G solvation = -3276.539448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63740 -38.95417 -37.20020 -34.11834 -32.57058 -32.45249 -31.77127 -30.55813 -28.26919 -26.80604 -24.57933 -22.89408 -22.76120 -21.64874 -21.28542 -19.96482 -18.62202 -17.35191 -16.57431 -16.37320 -16.22442 -15.47118 -14.79867 -14.60744 -14.45405 -14.08738 -13.77402 -13.70149 -13.13378 -12.93999 -12.84970 -12.65104 -12.49307 -12.28779 -11.97977 -11.81198 -11.63010 -11.22395 -11.08400 -11.01991 -11.01611 -10.75271 -10.72716 -10.46069 -10.14947 -10.10643 -9.73147 -9.47316 -9.28607 -9.00607 -8.40094 -8.37099 -6.03295 -4.05643 2.66289 2.84199 3.27981 3.35089 3.36475 3.79205 4.26467 4.39271 4.41763 4.61039 4.69814 4.88389 4.94725 5.06455 5.15286 5.24712 5.31434 5.37818 5.41070 5.45264 5.49848 5.56166 5.61368 5.66500 5.76047 5.79586 5.83602 5.91449 5.96392 6.04995 6.33412 6.35071 6.47213 6.55305 6.70856 6.92380 6.95120 7.06900 7.51989 7.63449 7.77892 7.96309 8.26760 8.38274 9.00969 9.58350 11.07927 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024198 B = 0.003881 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.831085 B = 7212.259936 C = 7911.878038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.147 4.147 6 C 0.061 3.939 7 H 0.092 0.908 8 C 0.519 3.481 9 O -0.531 6.531 10 N -0.602 5.602 11 C 0.095 3.905 12 C -0.119 4.119 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.129 4.129 24 C 0.113 3.887 25 O -0.343 6.343 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 14.258 2.951 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.185 4.185 6 C -0.001 4.001 7 H 0.110 0.890 8 C 0.306 3.694 9 O -0.407 6.407 10 N -0.337 5.337 11 C -0.027 4.027 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.168 4.168 24 C -0.009 4.009 25 O -0.262 6.262 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.272 13.789 3.501 18.789 hybrid contribution 1.111 0.286 -0.922 1.472 sum -11.162 14.075 2.579 18.148 Atomic orbital electron populations 1.21791 0.92961 1.03150 1.02388 1.23076 0.95663 0.95379 0.85098 0.91150 1.23028 0.97581 0.99842 0.98273 1.23051 0.99303 1.02654 0.93488 1.22796 0.86763 0.96354 0.94161 0.89011 1.20134 0.81523 0.84110 0.83658 1.90688 1.53795 1.60392 1.35865 1.48075 1.12854 1.34387 1.38348 1.22058 0.93116 0.97077 0.90479 1.21830 1.00738 0.95464 0.97684 1.21193 0.95354 0.97210 0.96172 1.19123 0.95561 0.92589 0.93666 1.21229 1.16371 0.96693 1.21236 0.92598 1.25026 0.97291 0.94885 0.97255 1.69959 1.41477 1.05348 1.36631 0.86647 0.82813 0.78997 0.79843 1.20739 1.21313 1.19907 1.22038 0.99523 0.97021 0.98170 1.21692 0.99402 0.86517 0.93246 1.89277 1.25111 1.74241 1.37548 0.91787 0.91079 0.91620 0.90086 0.90191 0.88972 0.89792 0.90191 0.91369 0.89580 0.92241 0.92290 0.96585 0.96638 0.93019 0.91037 0.92074 0.91659 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.52 37.16 0.35 -0.86 16 2 C 0.07 0.64 3.92 -25.95 -0.10 0.54 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.15 -1.32 6.63 -25.16 -0.17 -1.48 16 5 C -0.15 -1.55 5.52 -25.16 -0.14 -1.69 16 6 C 0.06 0.76 2.77 -27.10 -0.08 0.69 16 7 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 8 C 0.52 8.22 7.02 -10.99 -0.08 8.15 16 9 O -0.53 -10.48 15.96 -13.66 -0.22 -10.70 16 10 N -0.60 -8.83 2.98 -173.00 -0.52 -9.35 16 11 C 0.09 1.23 5.96 -3.93 -0.02 1.20 16 12 C -0.12 -1.94 5.17 -26.83 -0.14 -2.08 16 13 C -0.08 -1.51 2.10 -90.57 -0.19 -1.70 16 14 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.69 8.39 -34.44 -0.29 -13.97 16 16 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.13 -2.15 5.36 -26.59 -0.14 -2.30 16 24 C 0.11 1.71 6.44 -3.69 -0.02 1.68 16 25 O -0.34 -4.84 10.60 -54.45 -0.58 -5.41 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.70 7.86 -51.93 -0.41 0.30 16 31 H 0.09 0.81 6.54 -51.93 -0.34 0.47 16 32 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 33 H 0.08 0.84 3.97 -51.93 -0.21 0.63 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.48 6.91 -51.93 -0.36 1.12 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -32.24 341.60 -9.18 -41.42 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.49 Total: -1.64 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.24 Total: -9.82 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.22 Total: -34.83 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.80 Total: -16.12 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.24 -9.18 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.703 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds