Wall clock time and date at job start Tue Mar 31 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47649 * 2 1 4 4 C 1.53085 * 109.48578 * 120.02736 * 2 1 3 5 5 C 1.53179 * 109.16583 * 177.59023 * 4 2 1 6 6 H 1.09006 * 109.53772 * 183.06433 * 5 4 2 7 7 C 1.50700 * 109.54189 * 62.88945 * 5 4 2 8 8 O 1.21298 * 119.99916 * 357.93516 * 7 5 4 9 9 N 1.34774 * 120.00026 * 177.93622 * 7 5 4 10 10 C 1.37102 * 119.99840 * 354.26978 * 9 7 5 11 11 H 1.07997 * 119.99980 * 128.78625 * 10 9 7 12 12 C 1.38946 * 119.99659 * 308.77915 * 10 9 7 13 13 N 1.31409 * 120.00654 * 341.26566 * 12 10 9 14 14 Si 1.86802 * 119.99716 * 161.54650 * 12 10 9 15 15 H 1.48498 * 109.47262 * 59.99632 * 14 12 10 16 16 H 1.48504 * 109.47181 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47268 * 299.99587 * 14 12 10 18 18 C 1.46501 * 120.00216 * 174.26593 * 9 7 5 19 19 C 1.54264 * 110.03243 * 242.41569 * 18 9 7 20 20 C 1.54891 * 104.19492 * 217.10342 * 19 18 9 21 21 C 1.54886 * 102.74741 * 37.94124 * 20 19 18 22 22 C 1.53867 * 110.03148 * 125.24665 * 18 9 7 23 23 C 1.53169 * 109.03713 * 303.01913 * 5 4 2 24 24 C 1.53094 * 109.16286 * 56.98150 * 23 5 4 25 25 O 1.42906 * 109.47865 * 239.97403 * 2 1 3 26 26 H 1.09004 * 109.46867 * 299.97050 * 1 2 3 27 27 H 1.08993 * 109.47362 * 59.97343 * 1 2 3 28 28 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.51930 * 57.68545 * 4 2 1 30 30 H 1.09004 * 109.57308 * 297.53184 * 4 2 1 31 31 H 0.97001 * 120.00533 * 185.06889 * 13 12 10 32 32 H 1.09007 * 110.01176 * 3.85554 * 18 9 7 33 33 H 1.08995 * 110.48947 * 335.78396 * 19 18 9 34 34 H 1.09004 * 110.48878 * 98.42320 * 19 18 9 35 35 H 1.08999 * 110.75390 * 279.62714 * 20 19 18 36 36 H 1.09001 * 110.75135 * 156.25911 * 20 19 18 37 37 H 1.08996 * 110.48598 * 203.37879 * 21 20 19 38 38 H 1.09005 * 110.48423 * 80.73859 * 21 20 19 39 39 H 1.09005 * 110.03460 * 238.57019 * 22 18 9 40 40 H 1.08994 * 110.03632 * 359.95512 * 22 18 9 41 41 H 1.09005 * 109.52375 * 176.88236 * 23 5 4 42 42 H 1.09000 * 109.52819 * 297.07595 * 23 5 4 43 43 H 1.09001 * 109.48476 * 182.40726 * 24 23 5 44 44 H 1.09003 * 109.48155 * 62.37062 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7222 1.2495 5 6 3.5712 -0.7708 1.2120 6 1 3.9393 -1.3313 2.0714 7 6 4.1212 0.6317 1.2516 8 8 3.3646 1.5797 1.2668 9 7 5.4538 0.8327 1.2702 10 6 6.3068 -0.2358 1.3716 11 1 7.1195 -0.3465 0.6691 12 6 6.1257 -1.1761 2.3784 13 7 5.4020 -0.8777 3.4339 14 14 6.9177 -2.8619 2.2353 15 1 8.3923 -2.7102 2.1470 16 1 6.5737 -3.6734 3.4305 17 1 6.4161 -3.5424 1.0145 18 6 5.9907 2.1929 1.1818 19 6 6.8409 2.3434 -0.0966 20 6 8.0130 3.2606 0.3325 21 6 8.3184 2.7744 1.7710 22 6 6.9301 2.4668 2.3692 23 6 4.0177 -1.4600 -0.0810 24 6 3.4307 -0.7093 -1.2791 25 8 2.0065 -0.6742 -1.1665 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6444 -1.7375 1.2709 30 1 1.7149 -0.1852 2.1404 31 1 5.3357 -1.5059 4.1700 32 1 5.1752 2.9162 1.1762 33 1 7.2153 1.3730 -0.4222 34 1 6.2585 2.8140 -0.8888 35 1 7.7043 4.3059 0.3354 36 1 8.8762 3.1133 -0.3166 37 1 8.8144 3.5594 2.3417 38 1 8.9316 1.8734 1.7470 39 1 6.5712 3.3237 2.9394 40 1 6.9860 1.5881 3.0117 41 1 5.1060 -1.4496 -0.1422 42 1 3.6614 -2.4901 -0.0865 43 1 3.7099 -1.2202 -2.2006 44 1 3.8192 0.3091 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335954449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:45 Heat of formation + Delta-G solvation = -94.747722 kcal Electronic energy + Delta-G solvation = -24691.565346 eV Core-core repulsion = 21415.215478 eV Total energy + Delta-G solvation = -3276.349868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.78525 -38.06733 -36.37800 -34.34692 -32.55146 -31.97697 -31.39290 -27.96583 -27.22770 -27.06030 -24.90675 -23.59292 -21.84383 -20.76875 -20.12552 -19.26395 -18.74706 -16.27863 -15.79094 -15.58480 -15.30539 -15.17126 -14.59281 -14.35275 -14.04890 -13.80491 -13.40196 -12.93219 -12.68101 -12.61144 -12.10856 -11.86396 -11.84088 -11.64761 -11.31732 -11.29139 -11.10296 -10.83585 -10.73098 -10.60153 -10.52130 -10.45254 -10.37072 -10.31839 -9.95139 -9.80270 -9.71077 -9.61143 -8.95363 -8.64832 -7.94056 -7.26822 -6.47104 -4.22551 3.06855 3.15272 3.16866 3.98132 4.16290 4.43746 4.79590 4.83328 5.31285 5.37591 5.49277 5.53494 5.65208 5.71031 5.82705 5.94578 6.00000 6.10542 6.13710 6.17964 6.19067 6.22928 6.25159 6.29368 6.38808 6.42755 6.47976 6.50362 6.52872 6.65075 6.69086 6.73647 6.88494 6.93000 6.97208 7.03836 7.13206 7.23308 7.29346 7.42937 7.94816 7.97236 8.63543 8.88659 9.60983 10.04146 10.58199 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.008532 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.108999 B = 3281.165447 C = 4287.078363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 H 0.088 0.912 4 C -0.123 4.123 5 C -0.103 4.103 6 H 0.122 0.878 7 C 0.524 3.476 8 O -0.611 6.611 9 N -0.448 5.448 10 C -0.328 4.328 11 H 0.081 0.919 12 C 0.052 3.948 13 N -0.855 5.855 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.133 3.867 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.144 4.144 24 C 0.066 3.934 25 O -0.394 6.394 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.273 0.727 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 0.590 -4.427 4.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.018 3.982 3 H 0.105 0.895 4 C -0.161 4.161 5 C -0.124 4.124 6 H 0.140 0.860 7 C 0.315 3.685 8 O -0.498 6.498 9 N -0.167 5.167 10 C -0.456 4.456 11 H 0.099 0.901 12 C -0.155 4.155 13 N -0.491 5.491 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.191 1.191 18 C 0.028 3.972 19 C -0.167 4.167 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.181 4.181 24 C -0.011 4.011 25 O -0.314 6.314 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.082 0.883 -4.382 4.471 hybrid contribution 0.764 -0.879 0.510 1.271 sum 0.846 0.004 -3.872 3.964 Atomic orbital electron populations 1.21730 0.94617 1.01674 1.01586 1.22376 0.93567 0.97592 0.84694 0.89463 1.21936 0.95957 0.99669 0.98576 1.21407 0.93804 0.96314 1.00884 0.86026 1.20161 0.82290 0.89867 0.76201 1.90417 1.58236 1.44595 1.56547 1.43383 1.04111 1.03962 1.65266 1.18994 1.13025 1.00173 1.13391 0.90099 1.25530 0.95887 0.99976 0.94095 1.69921 1.38250 1.36100 1.04843 0.86446 0.79879 0.82809 0.78433 1.19668 1.20788 1.19054 1.21548 0.95251 0.87286 0.93082 1.22663 0.96399 0.99832 0.97815 1.22427 0.97902 0.98755 0.96830 1.22271 0.97854 0.99936 0.95396 1.22340 0.93715 1.01644 0.98440 1.22168 1.03555 0.98326 0.94092 1.22504 0.80938 0.99581 0.98069 1.87751 1.21258 1.78585 1.43804 0.91571 0.92724 0.92783 0.92563 0.91341 0.91699 0.90552 0.90733 0.92927 0.92345 0.92487 0.93073 0.91745 0.93574 0.89175 0.88258 0.92474 0.90075 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.56 37.16 0.36 -1.88 16 2 C 0.07 1.48 2.97 -26.69 -0.08 1.40 16 3 H 0.09 1.96 5.73 -51.93 -0.30 1.67 16 4 C -0.12 -2.54 4.56 -26.59 -0.12 -2.66 16 5 C -0.10 -2.31 2.13 -91.59 -0.20 -2.51 16 6 H 0.12 2.94 4.72 -51.93 -0.24 2.70 16 7 C 0.52 12.83 5.05 -10.99 -0.06 12.77 16 8 O -0.61 -16.13 13.13 5.54 0.07 -16.06 16 9 N -0.45 -10.48 2.39 -106.55 -0.25 -10.73 16 10 C -0.33 -7.57 5.03 -14.93 -0.08 -7.64 16 11 H 0.08 1.83 6.94 -52.49 -0.36 1.47 16 12 C 0.05 1.20 3.37 -17.47 -0.06 1.14 16 13 N -0.86 -21.43 11.36 55.50 0.63 -20.80 16 14 Si 0.90 18.33 29.59 -169.99 -5.03 13.30 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 C 0.13 2.83 3.30 -66.82 -0.22 2.61 16 19 C -0.13 -2.32 6.42 -25.07 -0.16 -2.48 16 20 C -0.12 -1.86 6.91 -24.74 -0.17 -2.03 16 21 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 22 C -0.12 -2.46 6.24 -25.62 -0.16 -2.62 16 23 C -0.14 -2.89 5.37 -26.60 -0.14 -3.03 16 24 C 0.07 1.26 6.62 37.21 0.25 1.50 16 25 O -0.39 -7.87 10.41 -35.23 -0.37 -8.24 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 31 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 32 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 33 H 0.07 1.40 6.64 -51.93 -0.34 1.05 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 2.09 7.17 -51.93 -0.37 1.72 16 41 H 0.10 2.05 5.84 -51.93 -0.30 1.75 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.05 0.94 7.38 -51.93 -0.38 0.56 16 LS Contribution 328.00 15.07 4.94 4.94 Total: -1.00 -26.44 328.00 -8.31 -34.75 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -7.30 Total: 10.37 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.01 Total: -7.53 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.38 Total: -31.53 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.29 Total: -24.30 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.44 -8.31 -34.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335954449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.998 kcal (2) G-P(sol) polarization free energy of solvation -26.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds