Wall clock time and date at job start Tue Mar 31 2020 06:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47649 * 2 1 4 4 C 1.53085 * 109.48578 * 120.02736 * 2 1 3 5 5 C 1.53179 * 109.16583 * 177.59023 * 4 2 1 6 6 H 1.09006 * 109.53772 * 183.06433 * 5 4 2 7 7 C 1.50700 * 109.54189 * 62.88945 * 5 4 2 8 8 O 1.21298 * 119.99916 * 357.93516 * 7 5 4 9 9 N 1.34774 * 120.00026 * 177.93622 * 7 5 4 10 10 C 1.37102 * 119.99840 * 354.26978 * 9 7 5 11 11 H 1.07997 * 119.99980 * 128.78625 * 10 9 7 12 12 C 1.38946 * 119.99659 * 308.77915 * 10 9 7 13 13 N 1.31409 * 120.00654 * 341.26566 * 12 10 9 14 14 Si 1.86802 * 119.99716 * 161.54650 * 12 10 9 15 15 H 1.48498 * 109.47262 * 59.99632 * 14 12 10 16 16 H 1.48504 * 109.47181 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47268 * 299.99587 * 14 12 10 18 18 C 1.46501 * 120.00216 * 174.26593 * 9 7 5 19 19 C 1.54264 * 110.03243 * 242.41569 * 18 9 7 20 20 C 1.54891 * 104.19492 * 217.10342 * 19 18 9 21 21 C 1.54886 * 102.74741 * 37.94124 * 20 19 18 22 22 C 1.53867 * 110.03148 * 125.24665 * 18 9 7 23 23 C 1.53169 * 109.03713 * 303.01913 * 5 4 2 24 24 C 1.53094 * 109.16286 * 56.98150 * 23 5 4 25 25 O 1.42906 * 109.47865 * 239.97403 * 2 1 3 26 26 H 1.09004 * 109.46867 * 299.97050 * 1 2 3 27 27 H 1.08993 * 109.47362 * 59.97343 * 1 2 3 28 28 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.51930 * 57.68545 * 4 2 1 30 30 H 1.09004 * 109.57308 * 297.53184 * 4 2 1 31 31 H 0.97001 * 120.00533 * 185.06889 * 13 12 10 32 32 H 1.09007 * 110.01176 * 3.85554 * 18 9 7 33 33 H 1.08995 * 110.48947 * 335.78396 * 19 18 9 34 34 H 1.09004 * 110.48878 * 98.42320 * 19 18 9 35 35 H 1.08999 * 110.75390 * 279.62714 * 20 19 18 36 36 H 1.09001 * 110.75135 * 156.25911 * 20 19 18 37 37 H 1.08996 * 110.48598 * 203.37879 * 21 20 19 38 38 H 1.09005 * 110.48423 * 80.73859 * 21 20 19 39 39 H 1.09005 * 110.03460 * 238.57019 * 22 18 9 40 40 H 1.08994 * 110.03632 * 359.95512 * 22 18 9 41 41 H 1.09005 * 109.52375 * 176.88236 * 23 5 4 42 42 H 1.09000 * 109.52819 * 297.07595 * 23 5 4 43 43 H 1.09001 * 109.48476 * 182.40726 * 24 23 5 44 44 H 1.09003 * 109.48155 * 62.37062 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7222 1.2495 5 6 3.5712 -0.7708 1.2120 6 1 3.9393 -1.3313 2.0714 7 6 4.1212 0.6317 1.2516 8 8 3.3646 1.5797 1.2668 9 7 5.4538 0.8327 1.2702 10 6 6.3068 -0.2358 1.3716 11 1 7.1195 -0.3465 0.6691 12 6 6.1257 -1.1761 2.3784 13 7 5.4020 -0.8777 3.4339 14 14 6.9177 -2.8619 2.2353 15 1 8.3923 -2.7102 2.1470 16 1 6.5737 -3.6734 3.4305 17 1 6.4161 -3.5424 1.0145 18 6 5.9907 2.1929 1.1818 19 6 6.8409 2.3434 -0.0966 20 6 8.0130 3.2606 0.3325 21 6 8.3184 2.7744 1.7710 22 6 6.9301 2.4668 2.3692 23 6 4.0177 -1.4600 -0.0810 24 6 3.4307 -0.7093 -1.2791 25 8 2.0065 -0.6742 -1.1665 26 1 -0.3633 0.5134 0.8903 27 1 -0.3634 0.5142 -0.8897 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6444 -1.7375 1.2709 30 1 1.7149 -0.1852 2.1404 31 1 5.3357 -1.5059 4.1700 32 1 5.1752 2.9162 1.1762 33 1 7.2153 1.3730 -0.4222 34 1 6.2585 2.8140 -0.8888 35 1 7.7043 4.3059 0.3354 36 1 8.8762 3.1133 -0.3166 37 1 8.8144 3.5594 2.3417 38 1 8.9316 1.8734 1.7470 39 1 6.5712 3.3237 2.9394 40 1 6.9860 1.5881 3.0117 41 1 5.1060 -1.4496 -0.1422 42 1 3.6614 -2.4901 -0.0865 43 1 3.7099 -1.2202 -2.2006 44 1 3.8192 0.3091 -1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335954449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:44 Heat of formation + Delta-G solvation = -108.471948 kcal Electronic energy + Delta-G solvation = -24692.160473 eV Core-core repulsion = 21415.215478 eV Total energy + Delta-G solvation = -3276.944995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52328 -39.67403 -38.04701 -36.15942 -34.19719 -33.52092 -33.18259 -29.45843 -28.78969 -28.60375 -26.73007 -25.21682 -23.44517 -22.40281 -21.55234 -20.98177 -20.43675 -18.10682 -17.49129 -17.15462 -16.99337 -16.83053 -16.20410 -15.95506 -15.68261 -15.40366 -15.04270 -14.53427 -14.30303 -14.18486 -13.68934 -13.47597 -13.28949 -13.24687 -12.95924 -12.85245 -12.76916 -12.43448 -12.35413 -12.23381 -12.10234 -11.91355 -11.85316 -11.83847 -11.43905 -11.38294 -11.34947 -11.24252 -10.68553 -10.40640 -9.75997 -9.10909 -8.29395 -6.09815 1.43834 1.49931 1.54901 2.20606 2.36198 2.91887 3.03098 3.06710 3.85828 3.91770 3.95857 4.07164 4.10413 4.16943 4.23009 4.42491 4.46912 4.57671 4.64338 4.68287 4.68916 4.78514 4.81571 4.81938 4.87234 4.91315 4.96462 5.09174 5.10540 5.12824 5.17069 5.24661 5.32592 5.35775 5.39613 5.41509 5.50095 5.51227 5.57392 5.64740 6.15088 6.37162 6.78020 7.06152 7.74004 8.19246 8.76754 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.008532 C = 0.006530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.108999 B = 3281.165447 C = 4287.078363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 H 0.055 0.945 4 C -0.120 4.120 5 C -0.105 4.105 6 H 0.104 0.896 7 C 0.509 3.491 8 O -0.642 6.642 9 N -0.451 5.451 10 C -0.328 4.328 11 H 0.088 0.912 12 C 0.022 3.978 13 N -0.889 5.889 14 Si 0.952 3.048 15 H -0.265 1.265 16 H -0.289 1.289 17 H -0.253 1.253 18 C 0.120 3.880 19 C -0.121 4.121 20 C -0.109 4.109 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.137 4.137 24 C 0.068 3.932 25 O -0.394 6.394 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.271 0.729 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -0.187 -5.950 6.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.019 3.981 3 H 0.073 0.927 4 C -0.159 4.159 5 C -0.126 4.126 6 H 0.122 0.878 7 C 0.300 3.700 8 O -0.532 6.532 9 N -0.169 5.169 10 C -0.456 4.456 11 H 0.105 0.895 12 C -0.182 4.182 13 N -0.526 5.526 14 Si 0.776 3.224 15 H -0.190 1.190 16 H -0.215 1.215 17 H -0.177 1.177 18 C 0.016 3.984 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.158 4.158 23 C -0.175 4.175 24 C -0.009 4.009 25 O -0.314 6.314 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.110 0.112 -5.922 6.027 hybrid contribution 0.456 -0.572 1.032 1.265 sum 1.565 -0.460 -4.891 5.156 Atomic orbital electron populations 1.21703 0.91623 1.03011 1.02635 1.22314 0.95899 0.95610 0.84295 0.92712 1.21917 0.94982 1.00542 0.98413 1.21391 0.94883 0.94955 1.01407 0.87823 1.20620 0.82593 0.90531 0.76222 1.90389 1.58939 1.45676 1.58154 1.43570 1.04074 1.04918 1.64350 1.19174 1.12828 1.00201 1.13404 0.89459 1.26132 0.96076 1.02550 0.93431 1.70037 1.39827 1.37108 1.05652 0.85607 0.79324 0.79017 0.78453 1.19014 1.21503 1.17659 1.21764 0.95139 0.85857 0.95641 1.22582 0.96958 1.00379 0.96064 1.22404 0.97487 0.98721 0.96076 1.22221 0.95342 1.00714 0.96323 1.22251 0.96044 0.99973 0.97514 1.22119 1.03212 0.98948 0.93241 1.22564 0.80555 0.98643 0.99095 1.87757 1.21586 1.78311 1.43697 0.90789 0.91506 0.91231 0.90706 0.93093 0.91944 0.93237 0.91386 0.92479 0.90877 0.89742 0.90557 0.92079 0.93571 0.92807 0.88851 0.90888 0.86688 0.95785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.56 71.98 0.69 -3.40 16 2 C 0.08 3.00 2.97 30.62 0.09 3.09 16 3 H 0.05 2.55 5.73 -2.38 -0.01 2.53 16 4 C -0.12 -5.00 4.56 30.68 0.14 -4.86 16 5 C -0.11 -4.78 2.13 -11.42 -0.02 -4.81 16 6 H 0.10 5.12 4.72 -2.38 -0.01 5.11 16 7 C 0.51 25.79 5.05 87.66 0.44 26.24 16 8 O -0.64 -35.61 13.13 -3.08 -0.04 -35.65 16 9 N -0.45 -21.67 2.39 -609.38 -1.46 -23.12 16 10 C -0.33 -15.25 5.03 84.04 0.42 -14.83 16 11 H 0.09 3.90 6.94 -2.91 -0.02 3.88 16 12 C 0.02 1.01 3.37 84.93 0.29 1.30 16 13 N -0.89 -45.73 11.36 21.66 0.25 -45.49 16 14 Si 0.95 36.97 29.59 68.60 2.03 39.00 16 15 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.29 -11.50 7.11 99.48 0.71 -10.80 16 17 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 18 C 0.12 5.23 3.30 45.71 0.15 5.38 16 19 C -0.12 -4.27 6.42 31.67 0.20 -4.07 16 20 C -0.11 -3.05 6.91 31.89 0.22 -2.83 16 21 C -0.11 -3.37 6.83 31.67 0.22 -3.16 16 22 C -0.12 -4.84 6.24 31.32 0.20 -4.64 16 23 C -0.14 -5.40 5.37 30.68 0.16 -5.23 16 24 C 0.07 2.52 6.62 72.01 0.48 2.99 16 25 O -0.39 -15.20 10.41 -148.98 -1.55 -16.75 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 30 H 0.05 2.25 8.06 -2.38 -0.02 2.23 16 31 H 0.27 13.40 8.32 -92.71 -0.77 12.63 16 32 H 0.05 2.39 6.95 -2.38 -0.02 2.37 16 33 H 0.07 2.48 6.64 -2.39 -0.02 2.46 16 34 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.05 2.57 7.17 -2.39 -0.02 2.55 16 41 H 0.09 3.77 5.84 -2.38 -0.01 3.75 16 42 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.02 0.99 7.38 -2.39 -0.02 0.97 16 Total: -1.00 -58.74 328.00 3.87 -54.86 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.97 Total: 35.97 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 3.67 Total: -8.82 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.21 Total: -68.61 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -1.59 Total: -52.41 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Total: -58.74 3.87 -54.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335954449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.609 kcal (2) G-P(sol) polarization free energy of solvation -58.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds