Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47767 * 2 1 4 4 C 1.53088 * 109.48484 * 120.03862 * 2 1 3 5 5 C 1.53178 * 109.16648 * 177.59396 * 4 2 1 6 6 H 1.08998 * 109.61622 * 62.92439 * 5 4 2 7 7 C 1.50701 * 109.54461 * 183.15567 * 5 4 2 8 8 O 1.21288 * 119.99897 * 7.23126 * 7 5 4 9 9 N 1.34778 * 119.99768 * 187.51434 * 7 5 4 10 10 C 1.37097 * 120.00111 * 4.87289 * 9 7 5 11 11 H 1.08000 * 120.00293 * 233.89779 * 10 9 7 12 12 C 1.38946 * 119.99986 * 53.89730 * 10 9 7 13 13 N 1.31418 * 120.00089 * 20.38470 * 12 10 9 14 14 Si 1.86803 * 119.99991 * 200.38375 * 12 10 9 15 15 H 1.48496 * 109.47042 * 90.00386 * 14 12 10 16 16 H 1.48506 * 109.46775 * 209.99929 * 14 12 10 17 17 H 1.48494 * 109.47170 * 330.00210 * 14 12 10 18 18 C 1.46500 * 119.99461 * 184.87887 * 9 7 5 19 19 C 1.54269 * 110.02849 * 235.30591 * 18 9 7 20 20 C 1.54965 * 104.16179 * 217.13949 * 19 18 9 21 21 C 1.54890 * 102.77410 * 37.88536 * 20 19 18 22 22 C 1.53870 * 110.03219 * 118.09420 * 18 9 7 23 23 C 1.53181 * 109.03352 * 303.02085 * 5 4 2 24 24 C 1.53092 * 109.16587 * 56.97655 * 23 5 4 25 25 O 1.42902 * 109.41452 * 302.39351 * 24 23 5 26 26 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47363 * 300.01889 * 1 2 3 28 28 H 1.09004 * 109.47482 * 60.01877 * 1 2 3 29 29 H 1.08996 * 109.52070 * 57.68374 * 4 2 1 30 30 H 1.08998 * 109.51824 * 297.49902 * 4 2 1 31 31 H 0.96993 * 120.00219 * 184.87375 * 13 12 10 32 32 H 1.08999 * 110.01970 * 356.69487 * 18 9 7 33 33 H 1.09006 * 110.48600 * 335.78130 * 19 18 9 34 34 H 1.08992 * 110.48561 * 98.42530 * 19 18 9 35 35 H 1.09001 * 110.71700 * 279.57508 * 20 19 18 36 36 H 1.09000 * 110.92242 * 156.29310 * 20 19 18 37 37 H 1.09005 * 110.48568 * 203.40457 * 21 20 19 38 38 H 1.09001 * 110.48626 * 80.76876 * 21 20 19 39 39 H 1.09004 * 110.03115 * 238.56380 * 22 18 9 40 40 H 1.09008 * 110.03371 * 359.97438 * 22 18 9 41 41 H 1.09001 * 109.52544 * 176.88922 * 23 5 4 42 42 H 1.09004 * 109.52257 * 297.01344 * 23 5 4 43 43 H 1.09005 * 109.47528 * 62.37601 * 24 23 5 44 44 H 1.09003 * 109.48299 * 182.39677 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7224 1.2494 5 6 3.5711 -0.7710 1.2120 6 1 3.9702 0.2429 1.2414 7 6 4.0801 -1.5480 2.3987 8 8 3.2996 -2.1279 3.1238 9 7 5.4020 -1.5937 2.6576 10 6 6.2744 -0.8535 1.9023 11 1 7.1139 -1.3334 1.4213 12 6 6.0786 0.5143 1.7555 13 7 5.3374 1.1686 2.6213 14 14 6.8689 1.4230 0.3275 15 1 5.9449 1.4175 -0.8349 16 1 7.1515 2.8247 0.7285 17 1 8.1385 0.7494 -0.0460 18 6 5.9064 -2.4346 3.7460 19 6 6.7417 -1.5852 4.7262 20 6 7.8967 -2.5257 5.1538 21 6 8.2247 -3.2829 3.8430 22 6 6.8488 -3.5138 3.1849 23 6 4.0176 -1.4599 -0.0813 24 6 3.4306 -0.7090 -1.2793 25 8 2.0065 -0.6740 -1.1665 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5141 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 1.6443 -1.7376 1.2706 30 1 1.7149 -0.1846 2.1397 31 1 5.1424 2.1082 2.4804 32 1 5.0745 -2.9022 4.2726 33 1 7.1357 -0.7011 4.2248 34 1 6.1417 -1.2994 5.5901 35 1 7.5639 -3.2181 5.9270 36 1 8.7589 -1.9529 5.4952 37 1 8.7070 -4.2354 4.0632 38 1 8.8583 -2.6735 3.1987 39 1 6.4746 -4.5054 3.4399 40 1 6.9304 -3.4123 2.1027 41 1 5.1059 -1.4497 -0.1425 42 1 3.6622 -2.4904 -0.0865 43 1 3.8192 0.3093 -1.2958 44 1 3.7100 -1.2197 -2.2009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335954450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -101.305070 kcal Electronic energy + Delta-G solvation = -24304.411068 eV Core-core repulsion = 21027.776852 eV Total energy + Delta-G solvation = -3276.634216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57092 -38.29553 -36.57924 -34.23917 -32.66352 -32.19069 -31.41642 -27.94664 -27.42636 -27.03789 -24.90792 -23.80851 -22.02302 -20.34511 -19.99147 -19.31788 -18.93300 -16.60113 -15.86527 -15.77324 -15.26375 -15.09734 -14.66378 -14.40403 -14.15154 -13.93654 -13.32714 -13.20103 -12.67719 -12.54231 -12.33188 -12.10346 -11.97816 -11.58578 -11.42012 -11.16099 -11.08184 -10.92782 -10.66399 -10.59486 -10.54048 -10.48510 -10.39230 -10.35026 -9.99674 -9.89967 -9.70580 -9.63264 -9.09570 -8.73216 -8.14211 -7.28173 -6.43269 -4.25776 3.04889 3.16215 3.16759 3.99819 4.12089 4.21704 4.75727 4.85783 5.32433 5.35934 5.37794 5.42903 5.54384 5.60220 5.66047 5.70578 5.86371 5.96598 6.05815 6.08185 6.13321 6.20386 6.22568 6.32174 6.33700 6.40241 6.42006 6.49906 6.50971 6.54550 6.61235 6.72808 6.75708 6.78331 6.92561 6.97549 7.13128 7.23550 7.31005 7.42212 7.71126 7.99429 8.64077 8.90423 9.61012 10.04655 10.58763 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.007199 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.137530 B = 3888.550480 C = 4644.684046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 H 0.052 0.948 4 C -0.125 4.125 5 C -0.096 4.096 6 H 0.114 0.886 7 C 0.524 3.476 8 O -0.611 6.611 9 N -0.449 5.449 10 C -0.330 4.330 11 H 0.080 0.920 12 C 0.054 3.946 13 N -0.850 5.850 14 Si 0.889 3.111 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.132 3.868 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.139 4.139 24 C 0.063 3.937 25 O -0.388 6.388 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.269 0.731 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 -1.859 -3.524 3.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.070 0.930 4 C -0.163 4.163 5 C -0.117 4.117 6 H 0.132 0.868 7 C 0.314 3.686 8 O -0.496 6.496 9 N -0.168 5.168 10 C -0.458 4.458 11 H 0.098 0.902 12 C -0.153 4.153 13 N -0.485 5.485 14 Si 0.715 3.285 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.190 1.190 18 C 0.027 3.973 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.177 4.177 24 C -0.013 4.013 25 O -0.307 6.307 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.233 -2.029 -3.196 3.793 hybrid contribution 0.718 0.856 -0.375 1.179 sum 0.486 -1.173 -3.570 3.790 Atomic orbital electron populations 1.21733 0.93714 1.02584 1.01739 1.22099 0.94382 0.95006 0.85680 0.92977 1.21988 0.95970 1.01455 0.96929 1.21252 0.94111 1.02938 0.93444 0.86843 1.20204 0.82492 0.80311 0.85590 1.90478 1.56486 1.50428 1.52207 1.43355 1.04880 1.40606 1.27958 1.19051 1.10818 0.88640 1.27257 0.90213 1.25508 0.96529 0.96752 0.96487 1.70080 1.37261 1.10107 1.31079 0.86533 0.80376 0.79236 0.82389 1.19513 1.20879 1.19033 1.21564 0.95449 0.91157 0.89087 1.22567 0.95685 0.99419 0.98048 1.22459 0.98542 0.98268 0.96859 1.22251 0.97258 0.98965 0.96883 1.22417 0.95085 0.97960 1.01093 1.22065 1.02917 0.99040 0.93674 1.22595 0.80664 0.99649 0.98415 1.87813 1.21445 1.78257 1.43231 0.91997 0.91326 0.92453 0.91292 0.91350 0.92046 0.90640 0.89110 0.93184 0.92621 0.92476 0.93022 0.91727 0.93040 0.91208 0.88851 0.92288 0.93528 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.56 37.15 0.36 -1.65 16 2 C 0.09 1.51 3.26 -26.69 -0.09 1.42 16 3 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -2.55 4.08 -26.59 -0.11 -2.66 16 5 C -0.10 -2.14 1.75 -91.59 -0.16 -2.30 16 6 H 0.11 2.68 4.76 -51.93 -0.25 2.44 16 7 C 0.52 13.17 6.38 -10.98 -0.07 13.10 16 8 O -0.61 -16.81 15.29 5.55 0.08 -16.72 16 9 N -0.45 -10.73 2.33 -106.54 -0.25 -10.97 16 10 C -0.33 -7.72 5.10 -14.93 -0.08 -7.80 16 11 H 0.08 1.84 7.39 -52.49 -0.39 1.46 16 12 C 0.05 1.27 3.37 -17.47 -0.06 1.21 16 13 N -0.85 -21.46 11.90 55.50 0.66 -20.80 16 14 Si 0.89 18.23 29.60 -169.99 -5.03 13.20 16 15 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 18 C 0.13 2.87 3.29 -66.81 -0.22 2.65 16 19 C -0.12 -2.43 6.41 -25.03 -0.16 -2.59 16 20 C -0.12 -2.02 6.91 -24.70 -0.17 -2.19 16 21 C -0.12 -1.86 6.83 -25.08 -0.17 -2.04 16 22 C -0.13 -2.35 6.28 -25.62 -0.16 -2.51 16 23 C -0.14 -2.73 5.24 -26.59 -0.14 -2.87 16 24 C 0.06 1.11 6.84 37.21 0.25 1.36 16 25 O -0.39 -7.07 10.41 -35.23 -0.37 -7.44 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 32 H 0.08 1.78 6.95 -51.93 -0.36 1.42 16 33 H 0.09 2.09 6.93 -51.93 -0.36 1.73 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.35 7.10 -51.92 -0.37 0.98 16 41 H 0.09 1.86 6.45 -51.93 -0.34 1.52 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -27.31 335.97 -8.34 -35.65 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.53 Total: 8.88 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.97 Total: -6.86 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.41 Total: -31.77 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.28 Total: -24.16 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.31 -8.34 -35.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335954450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.656 kcal (2) G-P(sol) polarization free energy of solvation -27.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds