Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47767 * 2 1 4 4 C 1.53088 * 109.48484 * 120.03862 * 2 1 3 5 5 C 1.53178 * 109.16648 * 177.59396 * 4 2 1 6 6 H 1.08998 * 109.61622 * 62.92439 * 5 4 2 7 7 C 1.50701 * 109.54461 * 183.15567 * 5 4 2 8 8 O 1.21288 * 119.99897 * 7.23126 * 7 5 4 9 9 N 1.34778 * 119.99768 * 187.51434 * 7 5 4 10 10 C 1.37097 * 120.00111 * 4.87289 * 9 7 5 11 11 H 1.08000 * 120.00293 * 233.89779 * 10 9 7 12 12 C 1.38946 * 119.99986 * 53.89730 * 10 9 7 13 13 N 1.31418 * 120.00089 * 20.38470 * 12 10 9 14 14 Si 1.86803 * 119.99991 * 200.38375 * 12 10 9 15 15 H 1.48496 * 109.47042 * 90.00386 * 14 12 10 16 16 H 1.48506 * 109.46775 * 209.99929 * 14 12 10 17 17 H 1.48494 * 109.47170 * 330.00210 * 14 12 10 18 18 C 1.46500 * 119.99461 * 184.87887 * 9 7 5 19 19 C 1.54269 * 110.02849 * 235.30591 * 18 9 7 20 20 C 1.54965 * 104.16179 * 217.13949 * 19 18 9 21 21 C 1.54890 * 102.77410 * 37.88536 * 20 19 18 22 22 C 1.53870 * 110.03219 * 118.09420 * 18 9 7 23 23 C 1.53181 * 109.03352 * 303.02085 * 5 4 2 24 24 C 1.53092 * 109.16587 * 56.97655 * 23 5 4 25 25 O 1.42902 * 109.41452 * 302.39351 * 24 23 5 26 26 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47363 * 300.01889 * 1 2 3 28 28 H 1.09004 * 109.47482 * 60.01877 * 1 2 3 29 29 H 1.08996 * 109.52070 * 57.68374 * 4 2 1 30 30 H 1.08998 * 109.51824 * 297.49902 * 4 2 1 31 31 H 0.96993 * 120.00219 * 184.87375 * 13 12 10 32 32 H 1.08999 * 110.01970 * 356.69487 * 18 9 7 33 33 H 1.09006 * 110.48600 * 335.78130 * 19 18 9 34 34 H 1.08992 * 110.48561 * 98.42530 * 19 18 9 35 35 H 1.09001 * 110.71700 * 279.57508 * 20 19 18 36 36 H 1.09000 * 110.92242 * 156.29310 * 20 19 18 37 37 H 1.09005 * 110.48568 * 203.40457 * 21 20 19 38 38 H 1.09001 * 110.48626 * 80.76876 * 21 20 19 39 39 H 1.09004 * 110.03115 * 238.56380 * 22 18 9 40 40 H 1.09008 * 110.03371 * 359.97438 * 22 18 9 41 41 H 1.09001 * 109.52544 * 176.88922 * 23 5 4 42 42 H 1.09004 * 109.52257 * 297.01344 * 23 5 4 43 43 H 1.09005 * 109.47528 * 62.37601 * 24 23 5 44 44 H 1.09003 * 109.48299 * 182.39677 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7224 1.2494 5 6 3.5711 -0.7710 1.2120 6 1 3.9702 0.2429 1.2414 7 6 4.0801 -1.5480 2.3987 8 8 3.2996 -2.1279 3.1238 9 7 5.4020 -1.5937 2.6576 10 6 6.2744 -0.8535 1.9023 11 1 7.1139 -1.3334 1.4213 12 6 6.0786 0.5143 1.7555 13 7 5.3374 1.1686 2.6213 14 14 6.8689 1.4230 0.3275 15 1 5.9449 1.4175 -0.8349 16 1 7.1515 2.8247 0.7285 17 1 8.1385 0.7494 -0.0460 18 6 5.9064 -2.4346 3.7460 19 6 6.7417 -1.5852 4.7262 20 6 7.8967 -2.5257 5.1538 21 6 8.2247 -3.2829 3.8430 22 6 6.8488 -3.5138 3.1849 23 6 4.0176 -1.4599 -0.0813 24 6 3.4306 -0.7090 -1.2793 25 8 2.0065 -0.6740 -1.1665 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5141 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 1.6443 -1.7376 1.2706 30 1 1.7149 -0.1846 2.1397 31 1 5.1424 2.1082 2.4804 32 1 5.0745 -2.9022 4.2726 33 1 7.1357 -0.7011 4.2248 34 1 6.1417 -1.2994 5.5901 35 1 7.5639 -3.2181 5.9270 36 1 8.7589 -1.9529 5.4952 37 1 8.7070 -4.2354 4.0632 38 1 8.8583 -2.6735 3.1987 39 1 6.4746 -4.5054 3.4399 40 1 6.9304 -3.4123 2.1027 41 1 5.1059 -1.4497 -0.1425 42 1 3.6622 -2.4904 -0.0865 43 1 3.8192 0.3093 -1.2958 44 1 3.7100 -1.2197 -2.2009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335954450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -115.750623 kcal Electronic energy + Delta-G solvation = -24305.037474 eV Core-core repulsion = 21027.776852 eV Total energy + Delta-G solvation = -3277.260622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30023 -39.86876 -38.27031 -36.09058 -34.26097 -33.60017 -33.26501 -29.47441 -28.94346 -28.56552 -26.75530 -25.39121 -23.50957 -21.93187 -21.43258 -21.05766 -20.64775 -18.42460 -17.53951 -17.27592 -17.00625 -16.71898 -16.23993 -16.03274 -15.72027 -15.53567 -14.85545 -14.77726 -14.33745 -14.19643 -13.99327 -13.45450 -13.33724 -13.19552 -13.03695 -12.85042 -12.67653 -12.53987 -12.28259 -12.19606 -12.07023 -12.00266 -11.89488 -11.83787 -11.50066 -11.42262 -11.33635 -11.26431 -10.69983 -10.51546 -10.01824 -9.17168 -8.28098 -6.16169 1.42072 1.47916 1.55567 2.15219 2.32805 2.83699 3.01156 3.04064 3.85513 3.88014 3.89674 3.97711 4.03759 4.10404 4.20244 4.26507 4.40450 4.58360 4.59485 4.65046 4.67122 4.77006 4.78449 4.80711 4.83853 4.90622 4.92410 5.05341 5.06281 5.07113 5.11540 5.15893 5.23359 5.29622 5.34295 5.41352 5.48581 5.51087 5.56019 5.63542 6.14026 6.28507 6.74440 7.04484 7.68715 8.15237 8.75259 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.007199 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.137530 B = 3888.550480 C = 4644.684046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.088 3.912 3 H 0.055 0.945 4 C -0.119 4.119 5 C -0.096 4.096 6 H 0.101 0.899 7 C 0.503 3.497 8 O -0.649 6.649 9 N -0.450 5.450 10 C -0.333 4.333 11 H 0.085 0.915 12 C 0.026 3.974 13 N -0.885 5.885 14 Si 0.944 3.056 15 H -0.255 1.255 16 H -0.291 1.291 17 H -0.256 1.256 18 C 0.117 3.883 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.120 4.120 23 C -0.132 4.132 24 C 0.065 3.935 25 O -0.390 6.390 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -2.050 -5.153 5.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.030 3.970 3 H 0.073 0.927 4 C -0.158 4.158 5 C -0.117 4.117 6 H 0.119 0.881 7 C 0.294 3.706 8 O -0.538 6.538 9 N -0.168 5.168 10 C -0.460 4.460 11 H 0.103 0.897 12 C -0.179 4.179 13 N -0.522 5.522 14 Si 0.767 3.233 15 H -0.179 1.179 16 H -0.217 1.217 17 H -0.180 1.180 18 C 0.014 3.986 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.159 4.159 23 C -0.170 4.170 24 C -0.011 4.011 25 O -0.310 6.310 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.023 -2.232 -4.835 5.423 hybrid contribution 0.349 0.901 0.236 0.994 sum 1.372 -1.332 -4.599 4.981 Atomic orbital electron populations 1.21733 0.91098 1.03102 1.03343 1.22160 0.96445 0.94373 0.84002 0.92738 1.21935 0.94954 1.00790 0.98104 1.21236 0.95100 1.01774 0.93552 0.88144 1.20870 0.82813 0.80577 0.86353 1.90432 1.57359 1.52326 1.53666 1.43568 1.04820 1.40305 1.28107 1.19213 1.10676 0.88830 1.27322 0.89700 1.26134 0.96570 0.97109 0.98059 1.70180 1.38853 1.10365 1.32763 0.85687 0.80195 0.77475 0.79970 1.17927 1.21701 1.17958 1.21801 0.95466 0.92165 0.89211 1.22460 0.96907 0.99139 0.96878 1.22425 0.97243 0.97702 0.97600 1.22224 0.95597 1.00549 0.96070 1.22344 0.95875 0.97189 1.00464 1.22016 1.02788 0.98799 0.93441 1.22694 0.80240 0.99693 0.98478 1.87826 1.21790 1.78309 1.43035 0.92046 0.90176 0.90411 0.92748 0.92996 0.92108 0.93369 0.91878 0.94718 0.90885 0.90594 0.89644 0.91910 0.91727 0.92202 0.89161 0.92882 0.93433 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.56 71.98 0.69 -2.97 16 2 C 0.09 3.00 3.26 30.62 0.10 3.10 16 3 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 4 C -0.12 -4.99 4.08 30.68 0.13 -4.86 16 5 C -0.10 -4.33 1.75 -11.42 -0.02 -4.35 16 6 H 0.10 4.84 4.76 -2.39 -0.01 4.83 16 7 C 0.50 26.31 6.38 87.66 0.56 26.86 16 8 O -0.65 -37.67 15.29 -3.06 -0.05 -37.72 16 9 N -0.45 -22.17 2.33 -609.38 -1.42 -23.59 16 10 C -0.33 -15.70 5.10 84.04 0.43 -15.27 16 11 H 0.09 3.88 7.39 -2.91 -0.02 3.86 16 12 C 0.03 1.20 3.37 84.92 0.29 1.48 16 13 N -0.89 -45.71 11.90 21.66 0.26 -45.45 16 14 Si 0.94 36.55 29.60 68.60 2.03 38.58 16 15 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 16 H -0.29 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 18 C 0.12 5.26 3.29 45.72 0.15 5.41 16 19 C -0.12 -4.80 6.41 31.70 0.20 -4.60 16 20 C -0.11 -3.45 6.91 31.91 0.22 -3.23 16 21 C -0.11 -3.16 6.83 31.67 0.22 -2.94 16 22 C -0.12 -4.35 6.28 31.31 0.20 -4.15 16 23 C -0.13 -5.14 5.24 30.69 0.16 -4.98 16 24 C 0.07 2.14 6.84 72.01 0.49 2.63 16 25 O -0.39 -13.47 10.41 -148.98 -1.55 -15.02 16 26 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 2.39 7.93 -2.39 -0.02 2.37 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.27 13.28 8.32 -92.71 -0.77 12.51 16 32 H 0.05 2.39 6.95 -2.39 -0.02 2.37 16 33 H 0.06 2.97 6.93 -2.38 -0.02 2.96 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.06 2.27 7.10 -2.38 -0.02 2.25 16 41 H 0.09 3.53 6.45 -2.39 -0.02 3.51 16 42 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -60.92 335.97 4.04 -56.88 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.96 Total: 34.17 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 3.81 Total: -7.85 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.16 Total: -69.04 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -1.60 Total: -52.73 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -60.92 4.04 -56.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335954450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.871 kcal (2) G-P(sol) polarization free energy of solvation -60.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds