Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 C 1.52997 * 109.47232 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47464 * 294.99972 * 10 8 7 12 12 O 1.21283 * 119.99657 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00684 * 180.02562 * 11 10 8 14 14 C 1.47063 * 136.05357 * 359.62418 * 13 11 10 15 15 C 1.53753 * 87.88863 * 152.96764 * 14 13 11 16 16 O 1.42903 * 114.57228 * 272.66670 * 15 14 13 17 17 C 1.50701 * 114.08985 * 139.77955 * 15 14 13 18 18 H 1.07999 * 119.99994 * 266.56476 * 17 15 14 19 19 C 1.37877 * 119.99681 * 86.56106 * 17 15 14 20 20 N 1.31511 * 119.99857 * 179.97438 * 19 17 15 21 21 Si 1.86796 * 120.00303 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47443 * 89.99940 * 21 19 17 23 23 H 1.48498 * 109.47043 * 209.99953 * 21 19 17 24 24 H 1.48504 * 109.47179 * 329.99778 * 21 19 17 25 25 C 1.47064 * 136.06010 * 180.02562 * 13 11 10 26 26 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 28 28 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 31 31 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 33 33 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 34 34 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 37 37 H 1.09008 * 109.47017 * 54.99755 * 10 8 7 38 38 H 1.09006 * 109.47500 * 174.99757 * 10 8 7 39 39 H 1.09006 * 113.46828 * 267.69795 * 14 13 11 40 40 H 1.09003 * 113.47017 * 38.13897 * 14 13 11 41 41 H 0.96700 * 113.99873 * 273.66753 * 16 15 14 42 42 H 0.97003 * 120.00463 * 179.97438 * 20 19 17 43 43 H 1.09006 * 113.46589 * 321.85775 * 25 13 11 44 44 H 1.08993 * 113.47486 * 92.24167 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6758 -1.7490 1.2493 10 6 1.5294 -0.0006 2.4988 11 6 1.9275 -0.7795 3.7259 12 8 2.5568 -1.8100 3.6123 13 7 1.5833 -0.3316 4.9496 14 6 0.8569 0.8288 5.4867 15 6 0.4840 -0.0383 6.7005 16 8 -0.7064 -0.8114 6.5352 17 6 0.5430 0.6903 8.0183 18 1 1.4429 0.6562 8.6144 19 6 -0.5520 1.4005 8.4629 20 7 -0.5007 2.0360 9.6132 21 14 -2.1087 1.4591 7.4322 22 1 -2.9972 0.3317 7.8128 23 1 -2.8117 2.7453 7.6699 24 1 -1.7549 1.3468 5.9943 25 6 1.7751 -0.7843 6.3356 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.6767 -0.2076 -2.1392 30 1 1.6767 -1.7490 -1.2490 31 1 3.9334 -1.2354 -2.1389 32 1 3.9337 0.3057 -1.2486 33 1 3.7158 -2.4708 0.0005 34 1 5.1695 -1.4441 0.0006 35 1 3.9328 -1.2356 2.1398 36 1 3.9331 0.3056 1.2498 37 1 1.9644 0.9978 2.5453 38 1 0.4430 0.0780 2.4550 39 1 1.5048 1.6691 5.7363 40 1 -0.0007 1.1224 4.8813 41 1 -1.5177 -0.3385 6.7659 42 1 -1.2709 2.5360 9.9259 43 1 1.7000 -1.8654 6.4534 44 1 2.6654 -0.3699 6.8085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336034096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -63.732591 kcal Electronic energy + Delta-G solvation = -23054.914871 eV Core-core repulsion = 19779.909920 eV Total energy + Delta-G solvation = -3275.004951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11193 -39.08293 -37.38543 -34.57605 -33.13759 -32.57831 -31.96165 -29.41449 -27.51760 -26.14009 -25.27590 -24.94038 -22.12534 -21.07558 -20.20169 -19.69967 -18.49857 -17.44519 -16.51958 -16.38585 -15.40611 -15.22245 -15.05463 -14.56926 -14.19839 -14.00821 -13.75445 -13.68582 -13.23086 -13.13410 -12.64331 -12.51325 -12.28700 -12.21526 -11.98315 -11.83840 -11.53661 -11.47988 -11.16703 -10.98695 -10.95287 -10.83851 -10.58969 -10.41933 -10.14153 -10.12588 -9.97124 -9.62621 -9.22539 -9.00505 -8.67426 -8.02217 -6.45558 -4.51500 2.96505 2.99187 3.11169 3.12243 3.43672 3.99449 4.56173 4.59452 4.64432 4.68494 4.93713 5.02521 5.05855 5.17619 5.26110 5.35341 5.44190 5.48054 5.53412 5.55812 5.62510 5.69713 5.74499 5.79057 5.88370 5.99327 6.02280 6.03664 6.10150 6.15342 6.17624 6.20321 6.26184 6.31637 6.37041 6.47317 6.55622 6.55838 6.59032 7.16282 7.97929 8.36598 8.48430 8.58398 8.67188 9.11959 10.66665 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029640 B = 0.004133 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.432425 B = 6773.550564 C = 7317.955134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.063 4.063 9 H 0.077 0.923 10 C -0.134 4.134 11 C 0.536 3.464 12 O -0.556 6.556 13 N -0.639 5.639 14 C 0.062 3.938 15 C 0.195 3.805 16 O -0.549 6.549 17 C -0.534 4.534 18 H 0.093 0.907 19 C 0.080 3.920 20 N -0.875 5.875 21 Si 0.860 3.140 22 H -0.266 1.266 23 H -0.283 1.283 24 H -0.258 1.258 25 C 0.120 3.880 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.351 0.649 42 H 0.271 0.729 43 H 0.070 0.930 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -0.717 -18.269 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.081 4.081 9 H 0.095 0.905 10 C -0.173 4.173 11 C 0.327 3.673 12 O -0.436 6.436 13 N -0.373 5.373 14 C -0.062 4.062 15 C 0.154 3.846 16 O -0.361 6.361 17 C -0.572 4.572 18 H 0.110 0.890 19 C -0.126 4.126 20 N -0.511 5.511 21 Si 0.689 3.311 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.002 4.002 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.204 0.796 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.599 -1.650 -18.587 19.003 hybrid contribution -1.349 0.747 -0.209 1.556 sum 2.250 -0.903 -18.795 18.951 Atomic orbital electron populations 1.21926 0.95422 1.01974 1.01627 1.21172 0.95332 0.99526 0.94568 0.91278 1.21566 0.95538 1.00679 0.97161 1.21552 0.95698 1.00603 0.97853 1.21497 0.99822 0.99577 0.94507 1.21710 0.94770 1.00295 0.98973 1.20912 0.95860 0.99688 0.91680 0.90474 1.21743 1.02934 1.00015 0.92636 1.20121 0.78719 0.85567 0.82929 1.90608 1.41625 1.25385 1.85993 1.49750 1.55424 1.27125 1.04981 1.24477 0.95111 0.90997 0.95610 1.20295 0.83177 0.88620 0.92547 1.86476 1.15719 1.43658 1.90230 1.21164 1.02609 1.30611 1.02788 0.88952 1.25005 0.98422 0.94399 0.94725 1.69848 1.31122 1.31116 1.19013 0.87311 0.84251 0.78266 0.81317 1.19254 1.20982 1.18310 1.23122 0.98100 1.00537 0.78422 0.92631 0.92286 0.92876 0.92269 0.92018 0.92454 0.92236 0.92075 0.92414 0.89776 0.92865 0.89463 0.89048 0.88821 0.91885 0.79647 0.91833 0.91116 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.85 37.15 0.33 -1.18 16 2 C -0.09 -0.91 2.25 -90.62 -0.20 -1.11 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 5 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 6 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 7 C -0.12 -1.55 4.94 -26.73 -0.13 -1.68 16 8 C -0.06 -0.81 1.36 -90.62 -0.12 -0.93 16 9 H 0.08 1.13 7.95 -51.93 -0.41 0.71 16 10 C -0.13 -1.91 4.79 -27.89 -0.13 -2.05 16 11 C 0.54 10.06 7.79 -10.99 -0.09 9.97 16 12 O -0.56 -11.77 14.74 5.56 0.08 -11.69 16 13 N -0.64 -12.67 3.69 -185.05 -0.68 -13.35 16 14 C 0.06 1.21 7.29 -8.38 -0.06 1.15 16 15 C 0.19 4.41 1.10 -91.11 -0.10 4.31 16 16 O -0.55 -12.93 13.34 -35.23 -0.47 -13.40 16 17 C -0.53 -13.63 9.26 -34.44 -0.32 -13.95 16 18 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 19 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.88 -24.23 13.96 55.43 0.77 -23.46 16 21 Si 0.86 18.69 24.42 -169.99 -4.15 14.54 16 22 H -0.27 -5.66 7.06 56.52 0.40 -5.26 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.26 -5.25 5.51 56.52 0.31 -4.93 16 25 C 0.12 2.51 8.02 -8.50 -0.07 2.45 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.60 6.32 -51.93 -0.33 0.28 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.33 5.95 -51.93 -0.31 1.02 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.09 1.25 6.17 -51.93 -0.32 0.93 16 39 H 0.09 1.74 8.10 -51.93 -0.42 1.32 16 40 H 0.06 1.18 7.15 -51.93 -0.37 0.81 16 41 H 0.35 7.86 3.16 45.56 0.14 8.00 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -28.68 334.99 -8.01 -36.69 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.16 Total: 10.57 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.45 Total: -4.95 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.09 Total: -36.80 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.39 Total: -25.09 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.15 Total: 14.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.68 -8.01 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336034096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.041 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds