Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46952 * 2 1 4 4 C 1.52993 * 109.47363 * 120.00079 * 2 1 3 5 5 C 1.53009 * 109.47214 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47124 * 300.00058 * 5 4 2 7 7 C 1.53006 * 109.46945 * 60.00026 * 6 5 4 8 8 C 1.52995 * 109.47066 * 240.00445 * 2 1 3 9 9 H 1.09007 * 109.46969 * 299.99524 * 8 2 1 10 10 C 1.53003 * 109.47396 * 59.99486 * 8 2 1 11 11 C 1.50699 * 109.47255 * 185.00004 * 10 8 2 12 12 O 1.21285 * 119.99879 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00193 * 179.97438 * 11 10 8 14 14 C 1.47580 * 134.49629 * 180.02562 * 13 11 10 15 15 C 1.53946 * 86.24073 * 155.42618 * 14 13 11 16 16 O 1.42901 * 113.74303 * 269.20417 * 15 14 13 17 17 C 1.50706 * 113.73932 * 138.00220 * 15 14 13 18 18 H 1.07998 * 119.99834 * 0.02562 * 17 15 14 19 19 C 1.37874 * 119.99551 * 179.97438 * 17 15 14 20 20 N 1.31510 * 120.00667 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99431 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47520 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46999 * 120.00440 * 21 19 17 24 24 H 1.48501 * 109.46976 * 240.00106 * 21 19 17 25 25 C 1.47812 * 134.57995 * 359.95741 * 13 11 10 26 26 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46976 * 299.99623 * 1 2 3 28 28 H 1.08995 * 109.47487 * 59.99913 * 1 2 3 29 29 H 1.09001 * 109.47318 * 300.00089 * 4 2 1 30 30 H 1.08998 * 109.47151 * 60.00043 * 4 2 1 31 31 H 1.08998 * 109.46929 * 60.00027 * 5 4 2 32 32 H 1.08996 * 109.46839 * 179.97438 * 5 4 2 33 33 H 1.08990 * 109.47106 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47453 * 300.00291 * 6 5 4 35 35 H 1.09001 * 109.47140 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47354 * 59.99881 * 7 6 5 37 37 H 1.08997 * 109.46718 * 65.00269 * 10 8 2 38 38 H 1.09000 * 109.46889 * 305.00502 * 10 8 2 39 39 H 1.09002 * 113.76914 * 41.06930 * 14 13 11 40 40 H 1.09000 * 113.77064 * 269.78402 * 14 13 11 41 41 H 0.96698 * 113.99808 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00592 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.67199 * 90.26545 * 25 13 11 44 44 H 1.08996 * 113.93703 * 318.91196 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7218 1.2488 6 6 4.0796 -1.4433 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 6 2.0400 -0.7211 -1.2493 9 1 1.6767 -1.7489 -1.2493 10 6 1.5299 0.0001 -2.4985 11 6 1.9286 -0.7781 -3.7259 12 8 2.5583 -1.8085 -3.6126 13 7 1.5845 -0.3297 -4.9494 14 6 1.7968 -0.8158 -6.3266 15 6 0.5390 -0.0092 -6.6970 16 8 -0.6742 -0.7578 -6.5988 17 6 0.6617 0.7429 -7.9972 18 1 1.5738 0.6820 -8.5723 19 6 -0.3909 1.5079 -8.4530 20 7 -1.5018 1.5817 -7.7529 21 14 -0.2391 2.4396 -10.0649 22 1 1.1007 2.1922 -10.6555 23 1 -1.2884 1.9735 -11.0067 24 1 -0.4093 3.8934 -9.8143 25 6 0.8422 0.8451 -5.4529 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6767 -0.2074 2.1392 30 1 1.6767 -1.7489 1.2492 31 1 3.9338 0.3058 1.2486 32 1 3.9334 -1.2352 2.1390 33 1 5.1695 -1.4433 -0.0010 34 1 3.7159 -2.4709 -0.0003 35 1 3.9328 -1.2358 -2.1397 36 1 3.9332 0.3055 -1.2499 37 1 1.9645 0.9986 -2.5444 38 1 0.4436 0.0783 -2.4547 39 1 1.6755 -1.8935 -6.4357 40 1 2.7104 -0.4418 -6.7886 41 1 -1.4668 -0.2545 -6.8303 42 1 -2.2422 2.1202 -8.0734 43 1 1.4754 1.7086 -5.6566 44 1 -0.0415 1.0948 -4.8657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336034097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -85.781093 kcal Electronic energy + Delta-G solvation = -22945.693517 eV Core-core repulsion = 19669.732471 eV Total energy + Delta-G solvation = -3275.961046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86021 -38.75584 -37.07591 -33.92744 -33.04388 -32.20221 -31.86255 -29.10134 -27.29732 -25.97262 -25.23072 -24.78445 -22.02731 -20.97775 -19.92153 -19.58402 -18.13249 -17.38227 -16.28083 -15.48876 -15.10490 -15.00526 -14.93735 -14.47197 -14.13975 -14.08258 -13.75821 -13.44619 -12.88736 -12.74424 -12.40757 -12.15816 -12.02785 -11.89663 -11.74669 -11.57206 -11.44937 -11.36013 -11.09348 -11.00651 -10.89175 -10.76821 -10.51063 -10.33354 -10.28476 -10.02931 -9.88125 -9.52841 -9.05403 -8.76267 -8.37074 -7.79548 -6.40380 -4.50773 3.12617 3.22289 3.25807 3.29251 3.61954 4.17799 4.65952 4.71067 4.75961 4.83994 5.05600 5.13244 5.25791 5.34620 5.43792 5.52778 5.55832 5.61364 5.64818 5.72071 5.78133 5.83177 5.89711 5.96945 6.00612 6.08106 6.11634 6.18975 6.23619 6.26850 6.29157 6.38353 6.42417 6.52232 6.64177 6.65634 6.66666 6.72344 7.11570 7.62455 7.81496 8.52729 8.56179 8.84715 9.20815 9.46477 10.66020 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.003696 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.399603 B = 7574.707848 C = 7914.906979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.062 4.062 9 H 0.076 0.924 10 C -0.133 4.133 11 C 0.528 3.472 12 O -0.564 6.564 13 N -0.634 5.634 14 C 0.110 3.890 15 C 0.238 3.762 16 O -0.574 6.574 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.899 5.899 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.078 3.922 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.392 0.608 42 H 0.273 0.727 43 H 0.080 0.920 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 0.572 13.693 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.081 4.081 9 H 0.094 0.906 10 C -0.173 4.173 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.368 5.368 14 C -0.012 4.012 15 C 0.196 3.804 16 O -0.386 6.386 17 C -0.574 4.574 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.539 5.539 21 Si 0.734 3.266 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.207 1.207 25 C -0.045 4.045 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.248 0.752 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.250 -0.416 14.123 15.073 hybrid contribution -0.446 1.189 -0.960 1.592 sum 4.803 0.773 13.162 14.033 Atomic orbital electron populations 1.21924 0.95365 1.01972 1.01666 1.21171 0.95387 0.99482 0.94560 0.91341 1.21566 0.95485 1.00681 0.97206 1.21551 0.95756 1.00563 0.97817 1.21499 0.99738 0.99589 0.94565 1.21702 0.94917 1.00207 0.98908 1.20892 0.95739 0.99675 0.91785 0.90552 1.21720 1.02937 0.99878 0.92716 1.20246 0.78823 0.85624 0.83543 1.90585 1.42022 1.25559 1.86280 1.50250 1.54665 1.27181 1.04671 1.23424 0.98971 1.00143 0.78667 1.19842 0.82685 0.86712 0.91138 1.86056 1.18010 1.43103 1.91436 1.21568 1.01444 1.28181 1.06218 0.91019 1.25070 0.94789 0.95568 0.97635 1.69321 1.04819 1.41072 1.38713 0.86286 0.78534 0.79204 0.82540 1.19444 1.20636 1.20677 1.24312 0.94064 0.89716 0.96412 0.92654 0.92956 0.92140 0.92316 0.92038 0.92270 0.92516 0.92499 0.92090 0.89763 0.92955 0.89685 0.89028 0.91313 0.89875 0.75189 0.91704 0.90179 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.85 37.16 0.33 -1.30 16 2 C -0.09 -0.98 2.25 -90.63 -0.20 -1.18 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 5 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 6 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 7 C -0.12 -1.65 4.94 -26.75 -0.13 -1.78 16 8 C -0.06 -0.85 1.36 -90.64 -0.12 -0.98 16 9 H 0.08 1.19 7.96 -51.92 -0.41 0.77 16 10 C -0.13 -2.05 4.72 -27.88 -0.13 -2.18 16 11 C 0.53 10.52 7.77 -10.99 -0.09 10.43 16 12 O -0.56 -12.54 14.69 5.55 0.08 -12.46 16 13 N -0.63 -13.37 3.62 -177.34 -0.64 -14.01 16 14 C 0.11 2.42 8.22 -2.97 -0.02 2.40 16 15 C 0.24 5.68 1.45 -90.84 -0.13 5.55 16 16 O -0.57 -14.74 13.49 -35.23 -0.48 -15.22 16 17 C -0.54 -13.36 8.63 -34.44 -0.30 -13.66 16 18 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 19 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 20 N -0.90 -22.50 11.08 55.43 0.61 -21.89 16 21 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 C 0.08 1.65 8.02 -2.86 -0.02 1.63 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.37 6.17 -51.93 -0.32 1.05 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 41 H 0.39 10.15 6.42 45.56 0.29 10.44 16 42 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 43 H 0.08 1.62 8.09 -51.93 -0.42 1.20 16 44 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -27.07 343.35 -8.60 -35.67 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.96 Total: 11.98 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.38 Total: -3.51 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.03 Total: -35.90 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.39 Total: -27.68 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.07 -8.60 -35.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336034097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.108 kcal (2) G-P(sol) polarization free energy of solvation -27.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds