Wall clock time and date at job start Tue Mar 31 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46952 * 2 1 4 4 C 1.52993 * 109.47363 * 120.00079 * 2 1 3 5 5 C 1.53009 * 109.47214 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47124 * 300.00058 * 5 4 2 7 7 C 1.53006 * 109.46945 * 60.00026 * 6 5 4 8 8 C 1.52995 * 109.47066 * 240.00445 * 2 1 3 9 9 H 1.09007 * 109.46969 * 299.99524 * 8 2 1 10 10 C 1.53003 * 109.47396 * 59.99486 * 8 2 1 11 11 C 1.50699 * 109.47255 * 185.00004 * 10 8 2 12 12 O 1.21285 * 119.99879 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00193 * 179.97438 * 11 10 8 14 14 C 1.47580 * 134.49629 * 180.02562 * 13 11 10 15 15 C 1.53946 * 86.24073 * 155.42618 * 14 13 11 16 16 O 1.42901 * 113.74303 * 269.20417 * 15 14 13 17 17 C 1.50706 * 113.73932 * 138.00220 * 15 14 13 18 18 H 1.07998 * 119.99834 * 0.02562 * 17 15 14 19 19 C 1.37874 * 119.99551 * 179.97438 * 17 15 14 20 20 N 1.31510 * 120.00667 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99431 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47520 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46999 * 120.00440 * 21 19 17 24 24 H 1.48501 * 109.46976 * 240.00106 * 21 19 17 25 25 C 1.47812 * 134.57995 * 359.95741 * 13 11 10 26 26 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46976 * 299.99623 * 1 2 3 28 28 H 1.08995 * 109.47487 * 59.99913 * 1 2 3 29 29 H 1.09001 * 109.47318 * 300.00089 * 4 2 1 30 30 H 1.08998 * 109.47151 * 60.00043 * 4 2 1 31 31 H 1.08998 * 109.46929 * 60.00027 * 5 4 2 32 32 H 1.08996 * 109.46839 * 179.97438 * 5 4 2 33 33 H 1.08990 * 109.47106 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47453 * 300.00291 * 6 5 4 35 35 H 1.09001 * 109.47140 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47354 * 59.99881 * 7 6 5 37 37 H 1.08997 * 109.46718 * 65.00269 * 10 8 2 38 38 H 1.09000 * 109.46889 * 305.00502 * 10 8 2 39 39 H 1.09002 * 113.76914 * 41.06930 * 14 13 11 40 40 H 1.09000 * 113.77064 * 269.78402 * 14 13 11 41 41 H 0.96698 * 113.99808 * 179.97438 * 16 15 14 42 42 H 0.96999 * 120.00592 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.67199 * 90.26545 * 25 13 11 44 44 H 1.08996 * 113.93703 * 318.91196 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7218 1.2488 6 6 4.0796 -1.4433 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 6 2.0400 -0.7211 -1.2493 9 1 1.6767 -1.7489 -1.2493 10 6 1.5299 0.0001 -2.4985 11 6 1.9286 -0.7781 -3.7259 12 8 2.5583 -1.8085 -3.6126 13 7 1.5845 -0.3297 -4.9494 14 6 1.7968 -0.8158 -6.3266 15 6 0.5390 -0.0092 -6.6970 16 8 -0.6742 -0.7578 -6.5988 17 6 0.6617 0.7429 -7.9972 18 1 1.5738 0.6820 -8.5723 19 6 -0.3909 1.5079 -8.4530 20 7 -1.5018 1.5817 -7.7529 21 14 -0.2391 2.4396 -10.0649 22 1 1.1007 2.1922 -10.6555 23 1 -1.2884 1.9735 -11.0067 24 1 -0.4093 3.8934 -9.8143 25 6 0.8422 0.8451 -5.4529 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.6767 -0.2074 2.1392 30 1 1.6767 -1.7489 1.2492 31 1 3.9338 0.3058 1.2486 32 1 3.9334 -1.2352 2.1390 33 1 5.1695 -1.4433 -0.0010 34 1 3.7159 -2.4709 -0.0003 35 1 3.9328 -1.2358 -2.1397 36 1 3.9332 0.3055 -1.2499 37 1 1.9645 0.9986 -2.5444 38 1 0.4436 0.0783 -2.4547 39 1 1.6755 -1.8935 -6.4357 40 1 2.7104 -0.4418 -6.7886 41 1 -1.4668 -0.2545 -6.8303 42 1 -2.2422 2.1202 -8.0734 43 1 1.4754 1.7086 -5.6566 44 1 -0.0415 1.0948 -4.8657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336034097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:12 Heat of formation + Delta-G solvation = -101.409401 kcal Electronic energy + Delta-G solvation = -22946.371211 eV Core-core repulsion = 19669.732471 eV Total energy + Delta-G solvation = -3276.638740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35505 -40.08921 -38.63607 -35.80490 -34.13213 -34.03657 -32.90704 -30.69066 -28.59803 -27.22841 -26.98557 -26.21849 -23.10819 -22.04474 -21.45686 -20.60390 -19.83518 -19.20354 -17.88745 -17.25095 -16.62960 -16.59772 -16.05775 -15.81343 -15.48020 -15.11598 -14.99205 -14.78953 -14.46425 -14.17833 -13.93941 -13.56715 -13.42342 -13.30826 -13.04244 -12.80282 -12.74751 -12.67875 -12.47885 -12.31675 -12.24267 -12.18383 -11.86930 -11.70544 -11.39228 -11.29789 -11.10201 -10.82131 -10.73633 -10.54314 -10.16837 -9.53652 -8.26949 -6.44207 1.45255 1.50228 1.60231 1.69736 2.00244 2.40802 2.95542 3.46730 3.69475 3.77758 3.80619 3.97213 4.14865 4.19579 4.28539 4.37523 4.45065 4.49252 4.54518 4.60119 4.61563 4.67018 4.72386 4.81939 4.82633 4.88251 4.90781 4.95279 5.03827 5.08355 5.21924 5.22637 5.25595 5.30917 5.33848 5.40463 5.48404 5.57072 5.65980 5.72887 5.92329 6.61535 6.90837 7.21425 7.30353 7.47448 8.78993 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.003696 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.399603 B = 7574.707848 C = 7914.906979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.058 4.058 9 H 0.052 0.948 10 C -0.124 4.124 11 C 0.519 3.481 12 O -0.591 6.591 13 N -0.638 5.638 14 C 0.108 3.892 15 C 0.218 3.782 16 O -0.588 6.588 17 C -0.556 4.556 18 H 0.071 0.929 19 C 0.034 3.966 20 N -0.916 5.916 21 Si 0.969 3.031 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.275 1.275 25 C 0.094 3.906 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.388 0.612 42 H 0.276 0.724 43 H 0.092 0.908 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 2.206 14.988 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.156 4.156 8 C -0.077 4.077 9 H 0.070 0.930 10 C -0.164 4.164 11 C 0.311 3.689 12 O -0.473 6.473 13 N -0.372 5.372 14 C -0.014 4.014 15 C 0.177 3.823 16 O -0.401 6.401 17 C -0.594 4.594 18 H 0.089 0.911 19 C -0.167 4.167 20 N -0.557 5.557 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.201 1.201 25 C -0.029 4.029 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.550 1.216 15.434 16.447 hybrid contribution -0.533 0.611 -1.384 1.604 sum 5.017 1.827 14.050 15.030 Atomic orbital electron populations 1.21925 0.95000 1.01724 1.02270 1.21140 0.95649 0.99712 0.93496 0.90223 1.21575 0.95589 1.00413 0.97247 1.21532 0.95582 1.00946 0.97170 1.21487 1.00220 0.98962 0.94609 1.21639 0.94870 1.00583 0.98492 1.20867 0.95795 0.98542 0.92461 0.92962 1.21777 1.03441 1.00157 0.90993 1.21108 0.78028 0.85529 0.84186 1.90576 1.43171 1.26925 1.86650 1.50316 1.54955 1.27128 1.04767 1.23413 0.99008 0.99200 0.79817 1.20122 0.82388 0.87626 0.92173 1.86042 1.18578 1.43870 1.91573 1.21767 1.01817 1.28842 1.07002 0.91107 1.25735 0.94451 0.96175 1.00321 1.69375 1.05203 1.41315 1.39779 0.85337 0.78252 0.78108 0.78894 1.19292 1.20816 1.20059 1.24103 0.94232 0.89613 0.94952 0.93372 0.91083 0.92794 0.90324 0.92712 0.91356 0.90994 0.91748 0.93237 0.93295 0.91867 0.87764 0.88348 0.92730 0.88330 0.75648 0.91374 0.88987 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.85 71.98 0.64 -2.31 16 2 C -0.08 -1.64 2.25 -10.80 -0.02 -1.66 16 3 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.11 -1.93 5.20 30.59 0.16 -1.77 16 5 C -0.11 -1.97 5.92 30.60 0.18 -1.78 16 6 C -0.12 -2.54 5.92 30.60 0.18 -2.36 16 7 C -0.12 -3.18 4.94 30.58 0.15 -3.03 16 8 C -0.06 -1.55 1.36 -10.81 -0.01 -1.56 16 9 H 0.05 1.65 7.96 -2.38 -0.02 1.63 16 10 C -0.12 -3.72 4.72 29.85 0.14 -3.58 16 11 C 0.52 20.81 7.77 87.66 0.68 21.49 16 12 O -0.59 -26.95 14.69 -3.05 -0.04 -27.00 16 13 N -0.64 -26.92 3.62 -836.79 -3.03 -29.95 16 14 C 0.11 4.82 8.22 86.48 0.71 5.53 16 15 C 0.22 10.47 1.45 -10.89 -0.02 10.45 16 16 O -0.59 -30.75 13.49 -148.98 -2.01 -32.76 16 17 C -0.56 -27.63 8.63 25.60 0.22 -27.41 16 18 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 19 C 0.03 1.64 5.39 84.65 0.46 2.10 16 20 N -0.92 -45.49 11.08 21.45 0.24 -45.26 16 21 Si 0.97 38.92 29.54 68.60 2.03 40.95 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 25 C 0.09 3.92 8.02 86.43 0.69 4.62 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.11 6.32 -2.39 -0.02 1.09 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.66 5.95 -2.39 -0.01 1.65 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.10 2.84 6.17 -2.39 -0.01 2.83 16 39 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.10 4.01 8.09 -2.39 -0.02 3.99 16 41 H 0.39 20.44 6.42 -74.06 -0.48 19.97 16 42 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 43 H 0.09 3.62 8.09 -2.39 -0.02 3.60 16 44 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -57.67 343.35 1.84 -55.83 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: 0.50 Total: 39.46 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.16 Total: -1.28 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -2.79 Total: -75.21 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -2.05 Total: -59.75 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -57.67 1.84 -55.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336034097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.578 kcal (2) G-P(sol) polarization free energy of solvation -57.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds