Wall clock time and date at job start Tue Mar 31 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47548 * 2 1 4 4 C 1.52999 * 109.47219 * 120.00003 * 2 1 3 5 5 C 1.53002 * 109.47165 * 59.99451 * 4 2 1 6 6 C 1.53000 * 109.47046 * 60.00360 * 5 4 2 7 7 C 1.52999 * 109.46844 * 299.99836 * 6 5 4 8 8 C 1.53000 * 109.46958 * 239.99622 * 2 1 3 9 9 H 1.08999 * 109.47469 * 179.97438 * 8 2 1 10 10 C 1.52999 * 109.46844 * 60.00152 * 8 2 1 11 11 C 1.50702 * 109.46827 * 174.99963 * 10 8 2 12 12 O 1.21278 * 120.00281 * 359.97438 * 11 10 8 13 13 N 1.34787 * 119.99975 * 179.97438 * 11 10 8 14 14 C 1.47571 * 134.49395 * 180.02562 * 13 11 10 15 15 C 1.53949 * 86.11848 * 155.36111 * 14 13 11 16 16 O 1.42898 * 113.73868 * 269.15521 * 15 14 13 17 17 C 1.50698 * 113.74280 * 137.95299 * 15 14 13 18 18 H 1.07999 * 120.00082 * 245.36329 * 17 15 14 19 19 C 1.37875 * 119.99927 * 65.35965 * 17 15 14 20 20 N 1.31510 * 120.00375 * 355.18751 * 19 17 15 21 21 Si 1.86807 * 119.99791 * 175.18920 * 19 17 15 22 22 H 1.48501 * 109.46998 * 90.00081 * 21 19 17 23 23 H 1.48499 * 109.47142 * 209.99780 * 21 19 17 24 24 H 1.48504 * 109.47073 * 330.00341 * 21 19 17 25 25 C 1.47580 * 134.48841 * 0.02562 * 13 11 10 26 26 H 1.09004 * 109.47442 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46851 * 300.00253 * 1 2 3 28 28 H 1.08994 * 109.47471 * 60.00113 * 1 2 3 29 29 H 1.08999 * 109.47459 * 179.97438 * 4 2 1 30 30 H 1.08999 * 109.47064 * 300.00021 * 4 2 1 31 31 H 1.09004 * 109.47056 * 179.97438 * 5 4 2 32 32 H 1.08999 * 109.47273 * 299.99889 * 5 4 2 33 33 H 1.08999 * 109.47469 * 59.99649 * 6 5 4 34 34 H 1.08999 * 109.47300 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47489 * 299.99635 * 7 6 5 36 36 H 1.09007 * 109.47000 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.47379 * 55.00224 * 10 8 2 38 38 H 1.09005 * 109.47441 * 294.99756 * 10 8 2 39 39 H 1.09000 * 113.76930 * 41.05463 * 14 13 11 40 40 H 1.09000 * 113.76735 * 269.66010 * 14 13 11 41 41 H 0.96702 * 113.99567 * 173.06083 * 16 15 14 42 42 H 0.97007 * 120.00051 * 5.10988 * 20 19 17 43 43 H 1.08996 * 113.77103 * 90.33773 * 25 13 11 44 44 H 1.09003 * 113.77157 * 318.93677 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5299 -2.1637 1.2493 6 6 2.0399 -2.8851 0.0001 7 6 1.5299 -2.1638 -1.2491 8 6 2.0400 -0.7213 -1.2492 9 1 3.1300 -0.7210 -1.2495 10 6 1.5299 -0.0001 -2.4984 11 6 2.1308 -0.6355 -3.7258 12 8 2.8923 -1.5726 -3.6124 13 7 1.8219 -0.1624 -4.9495 14 6 2.2084 -0.5255 -6.3266 15 6 0.8787 0.1192 -6.7581 16 8 -0.2170 -0.7970 -6.8030 17 6 0.9892 0.9642 -8.0010 18 1 0.8231 2.0299 -7.9460 19 6 1.3024 0.3767 -9.2084 20 7 1.5975 -0.9039 -9.2597 21 14 1.3077 1.3997 -10.7714 22 1 2.6608 1.9741 -10.9825 23 1 0.9494 0.5393 -11.9274 24 1 0.3172 2.4992 -10.6467 25 6 0.9612 0.9269 -5.4501 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -0.2074 2.1392 31 1 1.8937 -2.6777 2.1391 32 1 0.4399 -2.1637 1.2494 33 1 3.1299 -2.8851 0.0000 34 1 1.6761 -3.9126 -0.0001 35 1 0.4399 -2.1638 -1.2492 36 1 1.8928 -2.6780 -2.1391 37 1 1.8183 1.0501 -2.4549 38 1 0.4436 -0.0770 -2.5444 39 1 2.2527 -1.6004 -6.5015 40 1 3.0905 0.0025 -6.6889 41 1 -1.0728 -0.3788 -6.9697 42 1 1.5230 -1.4511 -8.4622 43 1 1.4769 1.8814 -5.5550 44 1 0.0096 1.0115 -4.9253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336034098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:15 Heat of formation + Delta-G solvation = -83.843921 kcal Electronic energy + Delta-G solvation = -23082.629533 eV Core-core repulsion = 19806.752489 eV Total energy + Delta-G solvation = -3275.877044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09450 -39.07840 -37.30177 -34.09130 -32.78800 -32.49521 -31.63296 -29.01992 -27.46920 -26.21924 -25.20217 -24.54675 -22.32516 -21.61632 -20.20051 -18.41854 -18.36160 -17.62305 -16.47212 -15.68225 -15.67773 -15.26885 -14.78255 -14.56737 -14.02737 -13.97854 -13.80814 -13.27349 -13.12194 -12.83344 -12.66510 -12.55697 -12.29558 -11.94239 -11.71001 -11.59219 -11.52111 -11.33729 -11.21434 -11.07065 -10.87334 -10.69748 -10.30598 -10.20795 -10.18916 -10.08457 -9.92628 -9.27103 -9.23368 -8.64611 -8.38446 -7.85316 -6.52449 -4.40207 3.17665 3.34301 3.36952 3.48934 3.53503 4.38188 4.61219 4.65095 4.65548 4.95168 5.09075 5.14672 5.19613 5.26705 5.28798 5.32074 5.38212 5.52545 5.58468 5.60401 5.64223 5.70257 5.76426 5.85486 5.89630 5.97859 6.00834 6.07740 6.11648 6.15460 6.22740 6.25917 6.29815 6.36814 6.55006 6.57359 6.63076 6.66281 6.96092 7.69289 8.14518 8.42065 8.63461 8.73572 8.88817 9.44238 10.85086 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040849 B = 0.003603 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.292933 B = 7770.353863 C = 7987.198037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.062 4.062 9 H 0.075 0.925 10 C -0.131 4.131 11 C 0.526 3.474 12 O -0.556 6.556 13 N -0.636 5.636 14 C 0.127 3.873 15 C 0.214 3.786 16 O -0.562 6.562 17 C -0.639 4.639 18 H 0.060 0.940 19 C 0.038 3.962 20 N -0.886 5.886 21 Si 1.072 2.928 22 H -0.286 1.286 23 H -0.283 1.283 24 H -0.287 1.287 25 C 0.075 3.925 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.365 0.635 42 H 0.282 0.718 43 H 0.084 0.916 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.539 3.210 17.005 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.081 4.081 9 H 0.093 0.907 10 C -0.171 4.171 11 C 0.316 3.684 12 O -0.436 6.436 13 N -0.370 5.370 14 C 0.006 3.994 15 C 0.174 3.826 16 O -0.367 6.367 17 C -0.676 4.676 18 H 0.078 0.922 19 C -0.171 4.171 20 N -0.520 5.520 21 Si 0.899 3.101 22 H -0.212 1.212 23 H -0.209 1.209 24 H -0.213 1.213 25 C -0.048 4.048 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.211 0.789 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.281 2.120 15.777 15.971 hybrid contribution -0.756 0.669 1.561 1.859 sum -2.037 2.789 17.338 17.679 Atomic orbital electron populations 1.21999 0.95453 1.02221 1.01347 1.21142 0.95940 0.98901 0.94626 0.91457 1.21532 1.00520 0.95745 0.97151 1.21589 1.00844 0.95617 0.97795 1.21494 1.00780 0.98576 0.94519 1.21738 0.99985 0.95242 0.98941 1.20878 1.00693 0.94860 0.91684 0.90650 1.21708 1.01968 1.00549 0.92843 1.20294 0.81057 0.83708 0.83331 1.90608 1.37514 1.29502 1.86002 1.50272 1.47108 1.34338 1.05322 1.23421 0.98688 1.00777 0.76544 1.20241 0.84853 0.86314 0.91180 1.86377 1.17770 1.38030 1.94536 1.22167 1.56910 0.95115 0.93453 0.92171 1.25874 0.92002 0.97508 1.01746 1.70672 1.40351 1.06376 1.34612 0.83514 0.76714 0.74705 0.75133 1.21249 1.20853 1.21286 1.24069 0.93079 0.91900 0.95761 0.91933 0.93110 0.92554 0.92101 0.92300 0.92588 0.91871 0.92149 0.92428 0.92524 0.89819 0.89682 0.89303 0.91328 0.89399 0.78871 0.90527 0.89783 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.15 37.16 0.30 -1.19 16 2 C -0.09 -0.92 2.72 -90.62 -0.25 -1.16 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.07 5.45 -26.73 -0.15 -1.22 16 5 C -0.12 -1.18 5.65 -26.73 -0.15 -1.33 16 6 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 7 C -0.12 -1.69 4.67 -26.73 -0.12 -1.81 16 8 C -0.06 -0.83 1.61 -90.62 -0.15 -0.97 16 9 H 0.08 1.12 7.95 -51.93 -0.41 0.70 16 10 C -0.13 -1.90 4.42 -27.88 -0.12 -2.02 16 11 C 0.53 10.34 7.77 -10.98 -0.09 10.25 16 12 O -0.56 -12.55 14.70 5.56 0.08 -12.46 16 13 N -0.64 -13.24 3.61 -178.33 -0.64 -13.88 16 14 C 0.13 3.02 6.98 -2.98 -0.02 3.00 16 15 C 0.21 4.98 0.95 -90.85 -0.09 4.89 16 16 O -0.56 -13.16 13.01 -35.23 -0.46 -13.62 16 17 C -0.64 -16.12 8.58 -34.44 -0.30 -16.42 16 18 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 19 C 0.04 1.01 5.41 -17.82 -0.10 0.92 16 20 N -0.89 -25.38 13.48 55.43 0.75 -24.63 16 21 Si 1.07 23.29 29.91 -169.99 -5.08 18.21 16 22 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.08 1.44 8.01 -2.98 -0.02 1.42 16 26 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 36 H 0.08 1.45 5.96 -51.93 -0.31 1.14 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.21 6.71 -51.93 -0.35 0.87 16 39 H 0.07 1.76 7.63 -51.93 -0.40 1.36 16 40 H 0.09 2.10 8.09 -51.93 -0.42 1.68 16 41 H 0.37 7.22 9.09 45.56 0.41 7.64 16 42 H 0.28 8.24 5.69 -40.82 -0.23 8.01 16 43 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -30.08 336.82 -8.07 -38.15 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.39 Total: 10.32 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.40 Total: -7.16 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.10 Total: -38.51 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.38 Total: -26.08 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.08 Total: 18.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.08 -8.07 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336034098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.691 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds