Wall clock time and date at job start Tue Mar 31 2020 06:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46618 * 2 1 4 4 C 1.52996 * 109.47147 * 240.00125 * 2 1 3 5 5 C 1.53001 * 109.47238 * 299.99822 * 4 2 1 6 6 C 1.52998 * 109.47032 * 299.99904 * 5 4 2 7 7 C 1.53003 * 109.46780 * 60.00389 * 6 5 4 8 8 C 1.52994 * 109.46877 * 119.99983 * 2 1 3 9 9 H 1.09009 * 109.47154 * 180.02562 * 8 2 1 10 10 C 1.52996 * 109.47347 * 300.00019 * 8 2 1 11 11 C 1.50702 * 109.47159 * 185.00014 * 10 8 2 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 8 14 14 C 1.47067 * 136.05683 * 359.91428 * 13 11 10 15 15 C 1.53242 * 88.08123 * 207.19809 * 14 13 11 16 16 O 1.42903 * 114.19722 * 87.72416 * 15 14 13 17 17 C 1.50699 * 114.32465 * 220.46716 * 15 14 13 18 18 H 1.07997 * 120.00222 * 93.76227 * 17 15 14 19 19 C 1.37875 * 119.99999 * 273.75385 * 17 15 14 20 20 N 1.31507 * 120.00214 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99923 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47012 * 60.00518 * 21 19 17 23 23 H 1.48502 * 109.47023 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47285 * 300.00481 * 21 19 17 25 25 C 1.47072 * 136.05745 * 180.27198 * 13 11 10 26 26 H 1.08994 * 109.46953 * 299.99576 * 1 2 3 27 27 H 1.08997 * 109.46889 * 60.00143 * 1 2 3 28 28 H 1.09002 * 109.46678 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47445 * 60.00073 * 4 2 1 30 30 H 1.09002 * 109.47051 * 179.97438 * 4 2 1 31 31 H 1.08995 * 109.46988 * 60.00458 * 5 4 2 32 32 H 1.09001 * 109.47260 * 180.02562 * 5 4 2 33 33 H 1.09006 * 109.47008 * 179.97438 * 6 5 4 34 34 H 1.08995 * 109.47686 * 300.00126 * 6 5 4 35 35 H 1.09001 * 109.46736 * 179.97438 * 7 6 5 36 36 H 1.08994 * 109.47663 * 59.99758 * 7 6 5 37 37 H 1.09004 * 109.47066 * 65.00217 * 10 8 2 38 38 H 1.08994 * 109.47405 * 305.00047 * 10 8 2 39 39 H 1.09000 * 113.46426 * 321.92357 * 14 13 11 40 40 H 1.08998 * 113.47159 * 92.37047 * 14 13 11 41 41 H 0.96700 * 113.99424 * 86.30612 * 16 15 14 42 42 H 0.97005 * 120.00572 * 179.97438 * 20 19 17 43 43 H 1.08991 * 113.47060 * 267.62729 * 25 13 11 44 44 H 1.08997 * 113.46223 * 38.07259 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5301 -2.1637 -1.2493 6 6 2.0402 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2492 8 6 2.0400 -0.7212 1.2492 9 1 3.1301 -0.7209 1.2495 10 6 1.5300 0.0000 2.4984 11 6 2.1309 -0.6354 3.7258 12 8 2.8924 -1.5725 3.6125 13 7 1.8267 -0.1584 4.9491 14 6 0.9860 0.9228 5.4851 15 6 1.9232 0.9812 6.6962 16 8 3.0489 1.8445 6.5246 17 6 1.2210 1.1730 8.0157 18 1 0.9547 0.3152 8.6154 19 6 0.9188 2.4436 8.4575 20 7 1.2428 3.4881 7.7272 21 14 0.0477 2.6813 10.0929 22 1 0.8782 2.1103 11.1836 23 1 -0.1611 4.1312 10.3363 24 1 -1.2667 1.9912 10.0585 25 6 2.1943 -0.4859 6.3349 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6768 -0.2074 -2.1392 30 1 3.1301 -0.7208 -1.2494 31 1 0.4402 -2.1637 -1.2493 32 1 1.8938 -2.6777 -2.1390 33 1 1.6765 -3.9126 0.0001 34 1 3.1301 -2.8850 0.0000 35 1 1.8930 -2.6779 2.1391 36 1 0.4401 -2.1638 1.2492 37 1 0.4436 -0.0770 2.5443 38 1 1.8183 1.0502 2.4549 39 1 1.0054 1.8286 4.8792 40 1 -0.0258 0.6031 5.7342 41 1 2.8748 2.7679 6.7531 42 1 1.0298 4.3821 8.0378 43 1 1.5076 -1.1845 6.8126 44 1 3.2388 -0.7753 6.4500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336034099.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:16 Heat of formation + Delta-G solvation = -93.976448 kcal Electronic energy + Delta-G solvation = -22999.641292 eV Core-core repulsion = 19723.324869 eV Total energy + Delta-G solvation = -3276.316423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48156 -40.33947 -38.77055 -35.88359 -34.12888 -33.78301 -32.55091 -30.77441 -28.73095 -27.45268 -26.85514 -26.27358 -23.27954 -22.65884 -21.62109 -19.86591 -19.34290 -19.18375 -17.87221 -17.24454 -16.72177 -16.61225 -16.55729 -15.94711 -15.43451 -15.20406 -14.90336 -14.68953 -14.48277 -13.97376 -13.90470 -13.71450 -13.42790 -13.40652 -13.21811 -12.85092 -12.75608 -12.61762 -12.41615 -12.24236 -12.21702 -12.13586 -11.92364 -11.65325 -11.39091 -11.09861 -11.07472 -10.80789 -10.74328 -10.52404 -10.18491 -9.55657 -8.27482 -6.44900 1.48743 1.50711 1.58113 1.67925 2.00931 2.41035 2.94509 3.48578 3.68535 3.78106 3.79389 3.96255 4.14819 4.21298 4.32182 4.36373 4.44991 4.48713 4.51362 4.54769 4.62068 4.67552 4.76749 4.79747 4.82424 4.89883 4.93346 4.94570 5.05341 5.12385 5.20352 5.21519 5.24584 5.29163 5.33311 5.43429 5.48690 5.60550 5.70287 5.72426 5.91037 6.60670 6.93017 7.19908 7.29643 7.48588 8.78498 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034791 B = 0.003635 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.613007 B = 7700.595223 C = 7981.666079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.059 4.059 9 H 0.051 0.949 10 C -0.121 4.121 11 C 0.526 3.474 12 O -0.590 6.590 13 N -0.641 5.641 14 C 0.088 3.912 15 C 0.218 3.782 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.074 0.926 19 C 0.033 3.967 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.275 1.275 23 H -0.282 1.282 24 H -0.266 1.266 25 C 0.104 3.896 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.389 0.611 42 H 0.277 0.723 43 H 0.101 0.899 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 -4.607 -14.740 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.156 4.156 8 C -0.078 4.078 9 H 0.070 0.930 10 C -0.160 4.160 11 C 0.318 3.682 12 O -0.472 6.472 13 N -0.374 5.374 14 C -0.035 4.035 15 C 0.177 3.823 16 O -0.401 6.401 17 C -0.593 4.593 18 H 0.092 0.908 19 C -0.167 4.167 20 N -0.558 5.558 21 Si 0.796 3.204 22 H -0.201 1.201 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.019 4.019 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.132 -5.511 -15.223 16.709 hybrid contribution -0.274 0.761 1.362 1.584 sum -4.406 -4.750 -13.860 15.300 Atomic orbital electron populations 1.21988 0.94341 1.02403 1.02106 1.21121 0.96795 0.98868 0.93487 0.91082 1.21544 1.00251 0.95855 0.97248 1.21563 1.01321 0.95363 0.97080 1.21484 1.00110 0.99008 0.94658 1.21662 1.00440 0.95081 0.98370 1.20852 0.99341 0.95134 0.92429 0.93023 1.21740 1.02499 1.00907 0.90872 1.21011 0.80993 0.82481 0.83725 1.90580 1.39127 1.31012 1.86484 1.49865 1.47323 1.35352 1.04867 1.23908 0.96401 0.88185 0.94967 1.19776 0.83936 0.86517 0.92115 1.86033 1.38218 1.25377 1.90425 1.21642 1.38676 0.93816 1.05178 0.90818 1.25764 0.95129 0.95200 1.00630 1.69314 1.47757 0.99360 1.39349 0.85407 0.78993 0.77114 0.78921 1.20066 1.20727 1.19087 1.23301 0.99902 0.98646 0.80015 0.92830 0.91484 0.91852 0.90387 0.92729 0.90952 0.91178 0.91760 0.93324 0.93461 0.91439 0.87458 0.88784 0.91830 0.88828 0.75487 0.91297 0.88129 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.15 71.98 0.59 -2.05 16 2 C -0.08 -1.70 2.72 -10.79 -0.03 -1.73 16 3 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -1.95 5.45 30.59 0.17 -1.79 16 5 C -0.12 -1.98 5.65 30.59 0.17 -1.81 16 6 C -0.12 -2.53 5.92 30.59 0.18 -2.35 16 7 C -0.12 -3.15 4.67 30.60 0.14 -3.01 16 8 C -0.06 -1.57 1.61 -10.80 -0.02 -1.59 16 9 H 0.05 1.63 7.96 -2.38 -0.02 1.61 16 10 C -0.12 -3.63 4.50 29.85 0.13 -3.49 16 11 C 0.53 21.15 7.79 87.66 0.68 21.84 16 12 O -0.59 -27.02 14.74 -3.04 -0.04 -27.07 16 13 N -0.64 -27.15 3.69 -859.21 -3.17 -30.32 16 14 C 0.09 3.72 7.83 83.10 0.65 4.37 16 15 C 0.22 10.51 1.57 -11.29 -0.02 10.49 16 16 O -0.59 -31.01 13.54 -148.98 -2.02 -33.03 16 17 C -0.56 -27.53 8.69 25.60 0.22 -27.31 16 18 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 19 C 0.03 1.62 5.39 84.66 0.46 2.07 16 20 N -0.92 -45.78 11.01 21.45 0.24 -45.54 16 21 Si 0.97 38.76 29.54 68.60 2.03 40.79 16 22 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 25 C 0.10 4.65 8.04 83.18 0.67 5.32 16 26 H 0.05 0.97 6.54 -2.39 -0.02 0.96 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.08 4.81 -2.39 -0.01 1.07 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.13 6.43 -2.39 -0.02 1.11 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.60 5.95 -2.39 -0.01 1.59 16 36 H 0.07 1.62 6.43 -2.39 -0.02 1.60 16 37 H 0.11 2.82 6.71 -2.38 -0.02 2.81 16 38 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.09 3.66 8.10 -2.39 -0.02 3.64 16 41 H 0.39 20.69 6.32 -74.06 -0.47 20.22 16 42 H 0.28 13.10 8.31 -92.70 -0.77 12.33 16 43 H 0.10 4.06 8.10 -2.39 -0.02 4.04 16 44 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -57.98 336.71 1.55 -56.43 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: 0.52 Total: 39.78 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 4.00 Total: -1.04 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -2.94 Total: -75.86 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -2.06 Total: -60.10 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -57.98 1.55 -56.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336034099.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.544 kcal (2) G-P(sol) polarization free energy of solvation -57.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds