Wall clock time and date at job start Tue Mar 31 2020 05:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46623 * 2 1 4 4 C 1.53002 * 109.47274 * 240.00214 * 2 1 3 5 5 C 1.50706 * 109.46925 * 59.99521 * 4 2 1 6 6 O 1.21279 * 120.00072 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00258 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46871 * 90.00155 * 8 7 5 10 10 H 1.07998 * 120.00222 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00011 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99586 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99962 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47167 * 60.00444 * 13 11 9 15 15 H 1.48506 * 109.46866 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47193 * 299.99997 * 13 11 9 17 17 C 1.46504 * 119.99858 * 0.02562 * 7 5 4 18 18 C 1.52999 * 109.47507 * 89.99839 * 17 7 5 19 19 C 1.53003 * 117.49748 * 243.62506 * 18 17 7 20 20 C 1.52992 * 117.50002 * 174.99956 * 18 17 7 21 21 C 1.52996 * 109.47571 * 119.99579 * 2 1 3 22 22 C 1.53002 * 117.49420 * 13.75492 * 21 2 1 23 23 C 1.53001 * 117.49920 * 305.09405 * 21 2 1 24 24 H 1.08996 * 109.46524 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46962 * 299.99942 * 1 2 3 26 26 H 1.09002 * 109.47193 * 60.00499 * 1 2 3 27 27 H 0.96706 * 114.00200 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46497 * 299.99785 * 4 2 1 29 29 H 1.09000 * 109.47312 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47710 * 210.00590 * 8 7 5 31 31 H 1.09000 * 109.46883 * 330.00634 * 8 7 5 32 32 H 0.97008 * 119.99716 * 180.02562 * 12 11 9 33 33 H 1.09005 * 109.47121 * 209.99861 * 17 7 5 34 34 H 1.08997 * 109.47160 * 329.99513 * 17 7 5 35 35 H 1.09002 * 115.54589 * 29.32423 * 18 17 7 36 36 H 1.08995 * 117.49876 * 359.97438 * 19 18 17 37 37 H 1.09002 * 117.49846 * 145.02378 * 19 18 17 38 38 H 1.09007 * 117.49671 * 214.97834 * 20 18 17 39 39 H 1.09002 * 117.50190 * 359.97438 * 20 18 17 40 40 H 1.09002 * 115.55207 * 159.41302 * 21 2 1 41 41 H 1.08996 * 117.50331 * 359.97438 * 22 21 2 42 42 H 1.08995 * 117.49824 * 145.02389 * 22 21 2 43 43 H 1.08997 * 117.49361 * 214.97261 * 23 21 2 44 44 H 1.08995 * 117.50043 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 8 0.8407 0.9755 -2.3684 7 7 1.8637 -0.4709 -3.7039 8 6 1.3749 0.2193 -4.9000 9 6 2.3667 1.2772 -5.3101 10 1 3.2709 1.4208 -4.7372 11 6 2.1198 2.0619 -6.4166 12 7 1.0184 1.8874 -7.1138 13 14 3.3488 3.3737 -6.9244 14 1 4.6576 2.7376 -7.2206 15 1 2.8534 4.0733 -8.1371 16 1 3.5128 4.3526 -5.8199 17 6 2.7061 -1.6620 -3.8382 18 6 1.8216 -2.9095 -3.8856 19 6 1.9682 -3.9230 -2.7488 20 6 2.5079 -4.2527 -4.1420 21 6 2.0402 -0.7211 1.2492 22 6 1.0328 -1.5533 2.0453 23 6 1.5401 -0.2225 2.6065 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 2.9703 1.4238 -0.0004 28 1 1.6768 -1.7489 -1.2492 29 1 3.1301 -0.7208 -1.2495 30 1 1.2543 -0.4995 -5.7106 31 1 0.4143 0.6865 -4.6828 32 1 0.8448 2.4392 -7.8926 33 1 3.2877 -1.5938 -4.7576 34 1 3.3814 -1.7275 -2.9852 35 1 0.8263 -2.7645 -4.3058 36 1 2.6950 -3.7011 -1.9674 37 1 1.0693 -4.4450 -2.4208 38 1 1.9639 -4.9915 -4.7306 39 1 3.5894 -4.2476 -4.2774 40 1 3.0648 -1.0888 1.1944 41 1 0.0067 -1.5866 1.6793 42 1 1.3949 -2.4679 2.5146 43 1 2.2357 -0.2623 3.4447 44 1 0.8480 0.6196 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339353342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:03 Heat of formation + Delta-G solvation = -34.777585 kcal Electronic energy + Delta-G solvation = -23292.855716 eV Core-core repulsion = 20019.106348 eV Total energy + Delta-G solvation = -3273.749368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87045 -38.34551 -37.07964 -35.28100 -34.28673 -32.52287 -31.33456 -28.41293 -27.31470 -25.83645 -24.02347 -22.50816 -22.31307 -22.24993 -20.64198 -19.48077 -18.37881 -17.00395 -16.42903 -16.12049 -15.90691 -15.22932 -14.98703 -14.65154 -14.41837 -14.04119 -13.86893 -13.32860 -12.88416 -12.69345 -12.32004 -12.28235 -12.11863 -11.59644 -11.53372 -11.42263 -11.32293 -11.17405 -10.95829 -10.87109 -10.68065 -10.57497 -10.49720 -10.30292 -10.14680 -10.05250 -9.81770 -9.66175 -9.56815 -8.60746 -8.38854 -7.57758 -5.99946 -4.04236 3.34401 3.38959 3.41678 3.54383 3.63979 3.82446 4.03094 4.47101 4.57992 4.61431 4.81234 4.89404 4.97123 4.99363 5.03282 5.14858 5.22536 5.33973 5.40409 5.50011 5.53303 5.55224 5.67154 5.78092 5.79693 5.85355 5.93182 5.99130 6.00170 6.06643 6.10721 6.17076 6.19148 6.29654 6.47167 6.77777 7.13174 7.50330 7.62864 7.96993 8.01692 8.28901 8.51293 8.96012 9.22929 9.60853 11.08053 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.005568 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.612675 B = 5027.431442 C = 6331.647514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.182 3.818 3 O -0.535 6.535 4 C -0.167 4.167 5 C 0.508 3.492 6 O -0.518 6.518 7 N -0.599 5.599 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.144 3.856 18 C -0.164 4.164 19 C -0.185 4.185 20 C -0.177 4.177 21 C -0.186 4.186 22 C -0.179 4.179 23 C -0.167 4.167 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.366 0.634 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 -12.187 14.314 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.141 3.859 3 O -0.339 6.339 4 C -0.207 4.207 5 C 0.295 3.705 6 O -0.395 6.395 7 N -0.331 5.331 8 C 0.128 3.872 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.019 3.981 18 C -0.183 4.183 19 C -0.222 4.222 20 C -0.215 4.215 21 C -0.204 4.204 22 C -0.215 4.215 23 C -0.204 4.204 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.212 0.788 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.262 -11.432 14.183 18.356 hybrid contribution 1.478 0.320 -0.412 1.567 sum 3.739 -11.112 13.771 18.085 Atomic orbital electron populations 1.22091 0.92672 1.01555 1.04743 1.20263 0.95009 0.81623 0.89042 1.86726 1.25463 1.25000 1.96713 1.22470 1.01879 1.01519 0.94850 1.20093 0.81486 0.84815 0.84123 1.90642 1.37611 1.25461 1.85741 1.48200 1.50287 1.27124 1.07442 1.19230 0.95956 0.91649 0.80315 1.21392 1.05926 1.17893 1.11058 0.92645 1.24921 0.95564 0.97252 0.96319 1.69925 1.24850 1.40281 1.18407 0.86582 0.81173 0.81897 0.77896 1.20342 1.21222 1.20179 1.20973 0.91678 0.83053 1.02414 1.22955 1.01864 0.90792 1.02712 1.23038 1.03002 1.04247 0.91953 1.22895 1.00558 0.98934 0.99088 1.23093 0.99192 1.04518 0.93631 1.23111 0.99789 0.94861 1.03782 1.22859 1.03773 0.97953 0.95788 0.92067 0.92711 0.88447 0.78836 0.88641 0.89865 0.95205 0.93977 0.92743 0.89687 0.91710 0.87427 0.88985 0.89206 0.89030 0.88808 0.88036 0.87935 0.89111 0.89179 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 7.18 37.16 0.27 -2.08 16 2 C 0.18 2.60 0.80 -90.62 -0.07 2.53 16 3 O -0.54 -8.87 11.85 -53.50 -0.63 -9.51 16 4 C -0.17 -2.44 3.50 -27.88 -0.10 -2.53 16 5 C 0.51 10.39 7.23 -10.98 -0.08 10.31 16 6 O -0.52 -12.90 12.54 -12.71 -0.16 -13.06 16 7 N -0.60 -12.48 2.46 -175.06 -0.43 -12.91 16 8 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 9 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 13 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 C 0.14 2.31 5.49 -4.04 -0.02 2.28 16 18 C -0.16 -2.26 5.95 -90.62 -0.54 -2.80 16 19 C -0.19 -2.00 9.18 -26.73 -0.25 -2.25 16 20 C -0.18 -1.96 10.25 -26.73 -0.27 -2.24 16 21 C -0.19 -2.04 5.32 -90.62 -0.48 -2.52 16 22 C -0.18 -1.73 9.66 -26.69 -0.26 -1.99 16 23 C -0.17 -1.71 9.86 -26.69 -0.26 -1.98 16 24 H 0.06 0.79 6.74 -51.93 -0.35 0.44 16 25 H 0.05 0.78 6.96 -51.93 -0.36 0.42 16 26 H 0.10 1.87 5.51 -51.93 -0.29 1.59 16 27 H 0.37 4.78 9.05 45.56 0.41 5.19 16 28 H 0.10 1.23 6.85 -51.93 -0.36 0.87 16 29 H 0.08 1.07 7.40 -51.93 -0.38 0.68 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 34 H 0.06 0.88 6.17 -51.93 -0.32 0.56 16 35 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.10 1.01 5.89 -51.93 -0.31 0.71 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.10 1.12 7.28 -51.93 -0.38 0.74 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -33.33 351.82 -9.19 -42.52 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.47 Total: 7.08 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.51 Total: -10.39 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.31 Total: -39.02 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.79 Total: -22.56 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.33 -9.19 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339353342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.740 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds