Wall clock time and date at job start Tue Mar 31 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42894 * 109.46698 * 2 1 4 4 C 1.52995 * 109.46795 * 119.99924 * 2 1 3 5 5 C 1.50704 * 109.47035 * 180.66889 * 4 2 1 6 6 O 1.21285 * 119.99510 * 354.41600 * 5 4 2 7 7 N 1.34772 * 120.00391 * 174.40884 * 5 4 2 8 8 C 1.46496 * 120.00246 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47202 * 90.00349 * 8 7 5 10 10 H 1.07992 * 119.99935 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99767 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00387 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99656 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47293 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47391 * 119.99902 * 13 11 9 16 16 H 1.48502 * 109.46521 * 239.99541 * 13 11 9 17 17 C 1.46501 * 120.00095 * 0.02562 * 7 5 4 18 18 C 1.53004 * 109.47046 * 270.00097 * 17 7 5 19 19 C 1.52998 * 117.49442 * 243.61724 * 18 17 7 20 20 C 1.52993 * 60.00120 * 252.51032 * 19 18 17 21 21 C 1.53004 * 109.47145 * 239.99859 * 2 1 3 22 22 C 1.52995 * 117.49451 * 128.74807 * 21 2 1 23 23 C 1.53000 * 117.49708 * 60.08768 * 21 2 1 24 24 H 1.08989 * 109.47304 * 304.80280 * 1 2 3 25 25 H 1.09002 * 109.47032 * 64.80851 * 1 2 3 26 26 H 1.09001 * 109.46371 * 184.80355 * 1 2 3 27 27 H 0.96701 * 113.99889 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47278 * 60.67389 * 4 2 1 29 29 H 1.08998 * 109.47534 * 300.66829 * 4 2 1 30 30 H 1.08997 * 109.47201 * 330.00238 * 8 7 5 31 31 H 1.09003 * 109.47078 * 210.00513 * 8 7 5 32 32 H 0.96994 * 120.00280 * 180.02562 * 12 11 9 33 33 H 1.09010 * 109.46750 * 29.99421 * 17 7 5 34 34 H 1.08997 * 109.47540 * 149.99557 * 17 7 5 35 35 H 1.08995 * 115.54804 * 29.32256 * 18 17 7 36 36 H 1.09004 * 117.50060 * 0.02562 * 19 18 17 37 37 H 1.09002 * 117.49854 * 145.01799 * 19 18 17 38 38 H 1.08997 * 117.49905 * 252.51229 * 20 19 18 39 39 H 1.08995 * 117.50110 * 107.49391 * 20 19 18 40 40 H 1.08991 * 115.55167 * 274.41705 * 21 2 1 41 41 H 1.08999 * 117.50285 * 359.97438 * 22 21 2 42 42 H 1.08998 * 117.50134 * 145.02291 * 22 21 2 43 43 H 1.09004 * 117.49851 * 214.97711 * 23 21 2 44 44 H 1.09002 * 117.49937 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5469 -0.7069 1.2576 6 8 4.1544 -0.2632 0.3062 7 7 4.2196 -1.1869 2.3223 8 6 5.6844 -1.1725 2.3306 9 6 6.1706 0.1238 2.9260 10 1 5.4596 0.8630 3.2639 11 6 7.5233 0.3663 3.0382 12 7 8.3892 -0.5338 2.6263 13 14 8.1259 1.9727 3.7768 14 1 6.9605 2.8094 4.1599 15 1 8.9475 1.6869 4.9803 16 1 8.9490 2.6992 2.7768 17 6 3.4858 -1.7232 3.4713 18 6 3.2140 -0.5988 4.4728 19 6 3.8583 -0.7137 5.8557 20 6 2.3529 -0.9322 5.6926 21 6 2.0401 -0.7213 -1.2493 22 6 3.0764 0.0039 -2.1100 23 6 1.6375 -0.1484 -2.6096 24 1 -0.3633 0.5865 0.8437 25 1 -0.3633 0.4374 -0.9299 26 1 -0.3632 -1.0241 0.0861 27 1 2.9703 1.4237 -0.0004 28 1 1.6866 -1.7523 1.2432 29 1 1.6669 -0.2144 2.1392 30 1 6.0545 -1.2647 1.3096 31 1 6.0526 -2.0071 2.9273 32 1 9.3407 -0.3633 2.7056 33 1 2.5393 -2.1452 3.1332 34 1 4.0798 -2.5012 3.9508 35 1 3.1153 0.3985 4.0443 36 1 4.4761 -1.5900 6.0519 37 1 4.1838 0.2084 6.3374 38 1 1.6879 -0.1540 6.0670 39 1 1.9799 -1.9525 5.7818 40 1 2.1254 -1.8046 -1.1647 41 1 3.3945 0.9950 -1.7866 42 1 3.8433 -0.6023 -2.5921 43 1 1.4583 -0.8548 -3.4202 44 1 1.0090 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339353343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:05 Heat of formation + Delta-G solvation = -40.243354 kcal Electronic energy + Delta-G solvation = -23597.562088 eV Core-core repulsion = 20323.575707 eV Total energy + Delta-G solvation = -3273.986381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96889 -38.14862 -36.86331 -34.67617 -34.28238 -32.64233 -31.79910 -28.71643 -27.24781 -25.87098 -23.49806 -22.33686 -22.04220 -21.88146 -20.56722 -19.68032 -18.44708 -16.77947 -16.54607 -16.21277 -15.98898 -15.17433 -14.89302 -14.65419 -14.17637 -14.06637 -13.41316 -13.30918 -12.55983 -12.49686 -12.34931 -12.22647 -12.11860 -11.94691 -11.67045 -11.32292 -11.21941 -11.19728 -10.99908 -10.91049 -10.76049 -10.61320 -10.28847 -10.13346 -9.95974 -9.84996 -9.59940 -9.54582 -9.45679 -8.75048 -8.41887 -7.68560 -6.02859 -4.05740 3.29632 3.34582 3.38287 3.43202 3.86515 4.13222 4.19207 4.45837 4.52519 4.88506 4.92785 5.00722 5.11889 5.21016 5.29584 5.32278 5.36042 5.44076 5.58884 5.60429 5.72606 5.75575 5.77883 5.83674 5.87303 5.89030 5.99304 6.04708 6.09553 6.26048 6.29846 6.37031 6.40986 6.45452 6.60405 6.61012 7.05702 7.43369 7.54215 7.93879 8.08191 8.25658 8.40985 8.92148 9.08830 9.58753 11.05598 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.006295 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.747134 B = 4447.193836 C = 5594.961983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.179 3.821 3 O -0.567 6.567 4 C -0.169 4.169 5 C 0.508 3.492 6 O -0.535 6.535 7 N -0.594 5.594 8 C 0.247 3.753 9 C -0.513 4.513 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.897 5.897 13 Si 0.894 3.106 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.145 3.855 18 C -0.154 4.154 19 C -0.163 4.163 20 C -0.190 4.190 21 C -0.168 4.168 22 C -0.134 4.134 23 C -0.189 4.189 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.390 0.610 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -3.123 -0.699 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.138 3.862 3 O -0.379 6.379 4 C -0.209 4.209 5 C 0.295 3.705 6 O -0.414 6.414 7 N -0.324 5.324 8 C 0.128 3.872 9 C -0.552 4.552 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.537 5.537 13 Si 0.722 3.278 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.021 3.979 18 C -0.173 4.173 19 C -0.200 4.200 20 C -0.228 4.228 21 C -0.186 4.186 22 C -0.171 4.171 23 C -0.226 4.226 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.244 0.756 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.262 -2.810 -1.215 15.566 hybrid contribution 1.168 0.627 0.714 1.506 sum -14.094 -2.183 -0.501 14.271 Atomic orbital electron populations 1.21715 0.92775 1.01911 1.02711 1.20256 0.93293 0.82071 0.90614 1.86344 1.29455 1.25367 1.96715 1.22504 0.94917 1.02674 1.00807 1.20299 0.88912 0.78393 0.82922 1.90615 1.70039 1.46276 1.34484 1.48225 1.09408 1.59701 1.15076 1.19281 0.72201 0.97121 0.98597 1.21414 0.91520 1.02387 1.39869 0.92369 1.24909 0.96735 0.96783 0.95711 1.69935 1.01868 1.34381 1.47485 0.86511 0.78760 0.83815 0.78749 1.19860 1.21099 1.21007 1.21003 0.95927 0.94194 0.86787 1.22730 1.03804 1.00869 0.89946 1.22874 0.94093 1.03210 0.99849 1.22965 0.94293 1.01997 1.03540 1.22772 1.05384 0.98934 0.91559 1.22662 0.90855 1.02285 1.01328 1.23008 1.00019 1.02888 0.96720 0.92041 0.91810 0.91448 0.75596 0.89052 0.88775 0.93880 0.95388 0.92910 0.91450 0.90661 0.87838 0.88797 0.89224 0.89368 0.89197 0.88451 0.88378 0.89529 0.89771 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.75 37.16 0.33 -1.22 16 2 C 0.18 2.58 0.92 -90.62 -0.08 2.50 16 3 O -0.57 -9.66 12.10 -52.19 -0.63 -10.29 16 4 C -0.17 -2.44 3.43 -27.88 -0.10 -2.54 16 5 C 0.51 9.72 7.16 -10.99 -0.08 9.64 16 6 O -0.54 -11.80 10.95 -11.40 -0.12 -11.92 16 7 N -0.59 -11.84 2.46 -175.05 -0.43 -12.27 16 8 C 0.25 6.21 5.20 -5.19 -0.03 6.18 16 9 C -0.51 -14.01 9.39 -34.44 -0.32 -14.33 16 10 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 13 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.15 2.28 5.46 -4.04 -0.02 2.26 16 18 C -0.15 -2.38 5.73 -90.62 -0.52 -2.90 16 19 C -0.16 -2.43 10.18 -26.74 -0.27 -2.71 16 20 C -0.19 -2.32 10.25 -26.74 -0.27 -2.60 16 21 C -0.17 -2.44 4.03 -90.62 -0.37 -2.81 16 22 C -0.13 -2.11 7.93 -26.69 -0.21 -2.32 16 23 C -0.19 -2.48 9.62 -26.69 -0.26 -2.74 16 24 H 0.06 0.69 8.14 -51.94 -0.42 0.27 16 25 H 0.06 0.72 7.14 -51.93 -0.37 0.35 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.39 7.24 5.32 45.56 0.24 7.49 16 28 H 0.09 1.11 7.68 -51.93 -0.40 0.71 16 29 H 0.09 1.30 7.68 -51.93 -0.40 0.90 16 30 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 31 H 0.03 0.73 7.89 -51.93 -0.41 0.32 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.07 0.85 6.60 -51.92 -0.34 0.51 16 34 H 0.08 1.18 7.63 -51.93 -0.40 0.78 16 35 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.39 8.11 -51.93 -0.42 0.97 16 41 H 0.10 1.67 6.29 -51.93 -0.33 1.34 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.18 7.59 -51.93 -0.39 0.78 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -30.25 351.80 -9.42 -39.67 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.95 Total: 10.35 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -2.30 Total: -11.98 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.31 Total: -37.88 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.76 Total: -22.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.25 -9.42 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339353343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.576 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds