Wall clock time and date at job start Tue Mar 31 2020 05:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00076 * 2 1 4 4 C 1.53005 * 109.47046 * 124.99944 * 3 2 1 5 5 O 1.42901 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.42893 * 114.00109 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47036 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46842 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46842 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46862 * 179.97438 * 9 8 7 11 11 O 1.21290 * 120.00084 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00373 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99852 * 224.29560 * 13 12 10 15 15 C 1.38949 * 119.99918 * 44.28910 * 13 12 10 16 16 N 1.31413 * 119.99917 * 18.21196 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 198.21142 * 15 13 12 18 18 H 1.48500 * 109.46908 * 90.00326 * 17 15 13 19 19 H 1.48498 * 109.47192 * 210.00185 * 17 15 13 20 20 H 1.48497 * 109.46872 * 330.00379 * 17 15 13 21 21 C 1.46504 * 119.99876 * 0.02562 * 12 10 9 22 22 C 1.52995 * 117.49718 * 183.22163 * 21 12 10 23 23 C 1.52994 * 117.50128 * 114.59933 * 21 12 10 24 24 H 1.08004 * 120.00269 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99733 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99733 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47399 * 5.00306 * 3 2 1 28 28 H 1.09003 * 109.47236 * 244.99659 * 3 2 1 29 29 H 1.08997 * 109.46982 * 60.00429 * 4 3 2 30 30 H 1.08996 * 109.47527 * 299.99939 * 4 3 2 31 31 H 1.09000 * 109.47282 * 60.00338 * 6 5 4 32 32 H 1.08995 * 109.47191 * 300.00007 * 6 5 4 33 33 H 1.09002 * 109.46895 * 60.00518 * 7 6 5 34 34 H 1.08999 * 109.47481 * 299.99839 * 7 6 5 35 35 H 1.09000 * 109.47500 * 60.00166 * 8 7 6 36 36 H 1.08995 * 109.47167 * 299.99716 * 8 7 6 37 37 H 1.08995 * 109.47008 * 299.99813 * 9 8 7 38 38 H 1.09002 * 109.46895 * 60.00370 * 9 8 7 39 39 H 0.97001 * 120.00005 * 174.93555 * 16 15 13 40 40 H 1.09006 * 115.54901 * 328.91915 * 21 12 10 41 41 H 1.08999 * 117.50473 * 359.97438 * 22 21 12 42 42 H 1.09002 * 117.50133 * 145.01673 * 22 21 12 43 43 H 1.09004 * 117.49750 * 214.97913 * 23 21 12 44 44 H 1.08996 * 117.49782 * 359.96796 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 8 3.7500 2.5703 1.1813 6 6 4.6886 2.6995 2.2510 7 6 5.3913 4.0550 2.1519 8 6 6.3968 4.1931 3.2969 9 6 7.0999 5.5483 3.1975 10 6 8.0899 5.6845 4.3256 11 8 8.2205 4.7859 5.1296 12 7 8.8308 6.8045 4.4404 13 6 9.7317 6.9283 5.4664 14 1 9.7943 7.8525 6.0215 15 6 10.5643 5.8645 5.7920 16 7 10.7555 4.8919 4.9292 17 14 11.4116 5.8170 7.4560 18 1 10.5433 5.1132 8.4337 19 1 12.7040 5.0959 7.3330 20 1 11.6612 7.2039 7.9241 21 6 8.6734 7.8897 3.4689 22 6 9.5957 9.1024 3.6088 23 6 8.1160 9.2199 3.9797 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.7400 0.5065 1.0921 30 1 2.4773 1.2356 2.1131 31 1 5.4277 1.9011 2.1843 32 1 4.1648 2.6310 3.2043 33 1 4.6520 4.8532 2.2190 34 1 5.9152 4.1240 1.1986 35 1 7.1360 3.3949 3.2295 36 1 5.8734 4.1240 4.2504 37 1 7.6234 5.6169 2.2440 38 1 6.3610 6.3468 3.2647 39 1 11.3926 4.1874 5.1259 40 1 8.3960 7.5816 2.4608 41 1 10.3194 9.0930 4.4239 42 1 9.9254 9.5923 2.6927 43 1 7.4722 9.7871 3.3075 44 1 7.8660 9.2874 5.0384 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342730193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:58 Heat of formation + Delta-G solvation = -45.170234 kcal Electronic energy + Delta-G solvation = -21479.224709 eV Core-core repulsion = 18205.024682 eV Total energy + Delta-G solvation = -3274.200027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.62713 -38.23075 -36.20054 -35.45173 -34.10908 -32.66826 -30.93287 -30.01192 -28.45836 -25.26957 -23.41007 -23.02019 -21.67410 -21.14902 -20.79424 -20.07231 -18.93249 -16.56516 -16.41316 -16.30473 -15.99579 -15.52392 -15.02083 -14.66418 -14.38725 -14.20055 -13.78898 -13.72744 -13.22092 -12.93885 -12.50605 -12.31212 -11.82195 -11.72014 -11.54224 -11.28061 -11.22064 -11.07548 -10.89882 -10.85757 -10.81442 -10.56200 -10.47091 -10.19571 -10.08045 -9.91115 -9.70982 -9.69005 -9.60433 -8.65828 -7.93000 -6.96812 -6.06732 -3.81904 1.90324 3.32586 3.39390 3.42509 3.58057 4.19673 4.31733 4.63520 4.77257 4.82524 4.88653 4.96172 5.03911 5.14019 5.24091 5.30383 5.32100 5.48381 5.53238 5.58175 5.62723 5.66447 5.73321 5.75920 5.81226 5.91239 5.95240 6.16455 6.22363 6.25195 6.26107 6.27968 6.31266 6.40807 6.55866 6.73017 6.81460 6.85568 6.96933 7.18376 7.66130 8.32789 9.12634 9.22932 9.73001 10.37452 11.02632 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024281 B = 0.002768 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.885681 B =10114.293878 C =11010.932039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.153 4.153 3 C -0.094 4.094 4 C 0.066 3.934 5 O -0.392 6.392 6 C 0.063 3.937 7 C -0.116 4.116 8 C -0.096 4.096 9 C -0.131 4.131 10 C 0.483 3.517 11 O -0.535 6.535 12 N -0.432 5.432 13 C -0.348 4.348 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.835 5.835 17 Si 0.912 3.088 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.077 3.923 22 C -0.175 4.175 23 C -0.209 4.209 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.263 0.737 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -3.502 -9.461 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.312 6.312 6 C -0.013 4.013 7 C -0.154 4.154 8 C -0.134 4.134 9 C -0.171 4.171 10 C 0.271 3.729 11 O -0.413 6.413 12 N -0.153 5.153 13 C -0.475 4.475 14 H 0.093 0.907 15 C -0.137 4.137 16 N -0.469 5.469 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.029 4.029 22 C -0.213 4.213 23 C -0.248 4.248 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.926 -4.067 -9.175 17.165 hybrid contribution 0.591 -0.236 0.830 1.046 sum -13.335 -4.302 -8.345 16.309 Atomic orbital electron populations 1.23896 0.95891 1.02009 1.00933 1.22838 0.96038 0.98149 1.00063 1.20664 0.97976 0.95727 0.98725 1.22375 0.93914 0.86799 0.98000 1.87838 1.55374 1.37200 1.50782 1.22576 0.90899 0.98624 0.89206 1.21571 0.98249 0.95445 1.00096 1.21166 0.97227 0.97743 0.97238 1.21565 0.98422 0.97772 0.99374 1.19859 0.82112 0.83902 0.87038 1.90513 1.67822 1.38703 1.44280 1.42814 1.34758 1.13777 1.23969 1.18838 1.16946 1.01458 1.10281 0.90671 1.25238 0.95195 0.95741 0.97554 1.69829 1.31257 1.11673 1.34107 0.86223 0.78033 0.78017 0.83789 1.20376 1.21347 1.19949 1.21682 1.03233 0.84445 0.93540 1.23055 0.93444 1.01729 1.03064 1.23307 0.96709 1.02982 1.01786 0.88359 0.88428 0.87195 0.90681 0.90106 0.93343 0.93379 0.93217 0.93311 0.91442 0.91377 0.91239 0.91588 0.90864 0.90882 0.92704 0.88007 0.87558 0.89866 0.89850 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 14.32 29.02 0.42 -0.90 16 2 C -0.15 -1.16 9.52 -36.03 -0.34 -1.50 16 3 C -0.09 -0.83 6.03 -27.88 -0.17 -0.99 16 4 C 0.07 0.68 5.92 37.16 0.22 0.90 16 5 O -0.39 -5.15 10.34 -35.23 -0.36 -5.52 16 6 C 0.06 0.83 5.94 37.16 0.22 1.05 16 7 C -0.12 -1.63 5.58 -26.73 -0.15 -1.78 16 8 C -0.10 -1.67 4.50 -26.73 -0.12 -1.79 16 9 C -0.13 -2.50 4.32 -27.88 -0.12 -2.62 16 10 C 0.48 12.30 6.97 -10.98 -0.08 12.22 16 11 O -0.54 -15.80 13.74 5.55 0.08 -15.72 16 12 N -0.43 -10.93 2.83 -107.73 -0.31 -11.24 16 13 C -0.35 -9.63 7.92 -14.93 -0.12 -9.75 16 14 H 0.08 2.02 7.26 -52.49 -0.38 1.64 16 15 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 16 N -0.84 -25.03 11.74 55.50 0.65 -24.38 16 17 Si 0.91 22.21 29.59 -169.99 -5.03 17.18 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.08 1.56 5.87 -67.93 -0.40 1.17 16 22 C -0.18 -3.21 9.80 -26.74 -0.26 -3.47 16 23 C -0.21 -3.61 10.36 -26.74 -0.28 -3.89 16 24 H 0.10 0.56 8.06 -52.48 -0.42 0.13 16 25 H 0.10 0.64 7.84 -52.49 -0.41 0.22 16 26 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 27 H 0.07 0.67 7.79 -51.93 -0.40 0.26 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.07 1.32 7.56 -51.93 -0.39 0.92 16 38 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 39 H 0.26 7.55 8.32 -40.82 -0.34 7.21 16 40 H 0.10 1.84 6.96 -51.93 -0.36 1.48 16 41 H 0.11 2.16 6.72 -51.93 -0.35 1.81 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -32.84 365.30 -8.49 -41.34 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.77 Total: 2.18 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.25 Total: -9.35 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.35 Total: -35.61 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.29 Total: -21.24 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.84 -8.49 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342730193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.834 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds