Wall clock time and date at job start Tue Mar 31 2020 05:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47173 * 2 1 4 4 C 1.53011 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47387 * 304.99281 * 4 3 2 6 6 C 1.53089 * 109.47872 * 184.97766 * 4 3 2 7 7 C 1.53180 * 109.15940 * 182.41678 * 6 4 3 8 8 H 1.08999 * 109.53648 * 297.09148 * 7 6 4 9 9 C 1.50702 * 109.61881 * 176.87703 * 7 6 4 10 10 O 1.21299 * 119.99461 * 0.38888 * 9 7 6 11 11 N 1.34776 * 120.00257 * 180.38712 * 9 7 6 12 12 C 1.37091 * 119.99897 * 179.97438 * 11 9 7 13 13 H 1.07996 * 120.00241 * 224.12559 * 12 11 9 14 14 C 1.38956 * 120.00134 * 44.13049 * 12 11 9 15 15 N 1.31402 * 119.99905 * 18.10141 * 14 12 11 16 16 Si 1.86803 * 120.00026 * 198.10569 * 14 12 11 17 17 H 1.48501 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46895 * 119.99557 * 16 14 12 19 19 H 1.48503 * 109.46880 * 239.99730 * 16 14 12 20 20 C 1.46499 * 119.99778 * 359.97438 * 11 9 7 21 21 C 1.53000 * 117.49618 * 188.62831 * 20 11 9 22 22 C 1.53000 * 60.00178 * 252.51516 * 21 20 11 23 23 C 1.53173 * 109.04897 * 56.95939 * 7 6 4 24 24 C 1.53098 * 109.16151 * 303.02891 * 23 7 6 25 25 O 1.42896 * 109.48132 * 65.01815 * 4 3 2 26 26 H 1.09001 * 109.46755 * 60.00275 * 1 2 3 27 27 H 1.08999 * 109.47617 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47453 * 300.00886 * 1 2 3 29 29 H 1.09002 * 109.46928 * 239.99110 * 2 1 3 30 30 H 1.09001 * 109.46755 * 119.99725 * 2 1 3 31 31 H 1.08992 * 109.47857 * 59.99725 * 3 2 1 32 32 H 1.09001 * 109.47056 * 299.99541 * 3 2 1 33 33 H 1.08999 * 109.52313 * 302.30588 * 6 4 3 34 34 H 1.08999 * 109.52541 * 62.50004 * 6 4 3 35 35 H 0.97006 * 120.00405 * 174.90824 * 15 14 12 36 36 H 1.08995 * 115.55214 * 334.34008 * 20 11 9 37 37 H 1.08997 * 117.50171 * 0.02562 * 21 20 11 38 38 H 1.09002 * 117.49843 * 145.02097 * 21 20 11 39 39 H 1.09000 * 117.49615 * 252.51238 * 22 21 20 40 40 H 1.09003 * 117.49602 * 107.49014 * 22 21 20 41 41 H 1.08999 * 109.53018 * 183.11712 * 23 7 6 42 42 H 1.09005 * 109.57534 * 62.95903 * 23 7 6 43 43 H 1.08998 * 109.47805 * 297.61929 * 24 23 7 44 44 H 1.09008 * 109.48888 * 177.59362 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9338 0.8529 0.8410 6 6 4.0807 2.8802 0.1246 7 6 5.6112 2.8774 0.0624 8 1 6.0094 2.3190 0.9097 9 6 6.1221 4.2944 0.1078 10 8 5.3405 5.2184 0.1896 11 7 7.4472 4.5350 0.0574 12 6 7.9118 5.8241 0.0981 13 1 8.6953 6.1374 -0.5760 14 6 7.3748 6.7279 1.0068 15 7 6.6995 6.2917 2.0462 16 14 7.6129 8.5629 0.7508 17 1 8.4044 8.7917 -0.4847 18 1 6.2879 9.2203 0.6193 19 1 8.3363 9.1353 1.9146 20 6 8.3911 3.4189 -0.0409 21 6 9.8800 3.7376 0.1090 22 6 9.3094 3.3761 -1.2639 23 6 6.0573 2.2134 -1.2439 24 6 5.4702 0.8013 -1.3159 25 8 4.0461 0.8736 -1.2220 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 3.6842 3.4801 -0.6945 34 1 3.7554 3.3007 1.0761 35 1 6.3880 6.9168 2.7194 36 1 8.0372 2.4676 0.3564 37 1 10.1572 4.7776 0.2810 38 1 10.5060 2.9960 0.6051 39 1 9.5601 2.3965 -1.6709 40 1 9.2114 4.1783 -1.9953 41 1 7.1455 2.1574 -1.2710 42 1 5.7015 2.7994 -2.0914 43 1 5.8591 0.2036 -0.4915 44 1 5.7491 0.3394 -2.2630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355491055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:35 Heat of formation + Delta-G solvation = -63.251268 kcal Electronic energy + Delta-G solvation = -23466.949183 eV Core-core repulsion = 20191.965103 eV Total energy + Delta-G solvation = -3274.984079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.71966 -38.16231 -36.08205 -34.91937 -33.33750 -32.49630 -31.12073 -30.63519 -27.09872 -25.70823 -23.78516 -22.60844 -21.69150 -21.34536 -20.86854 -20.24285 -18.85004 -16.57507 -16.26082 -16.06456 -15.52223 -14.78082 -14.67473 -14.42638 -14.10742 -14.00205 -13.85231 -13.45664 -12.82208 -12.70249 -12.49473 -12.38189 -12.05895 -11.81216 -11.37568 -11.21955 -11.09224 -10.92035 -10.83605 -10.82955 -10.72482 -10.60711 -10.48643 -10.29244 -10.12837 -10.00175 -9.80721 -9.65971 -9.22825 -8.68133 -7.91625 -6.99113 -6.10129 -3.85307 3.29363 3.39237 3.41229 4.00430 4.12537 4.26787 4.69004 4.76733 4.94339 5.05768 5.10901 5.19302 5.29285 5.34204 5.38052 5.44605 5.48604 5.56118 5.62946 5.70982 5.75686 5.79882 5.85610 5.88086 5.95809 5.97007 6.08080 6.14280 6.19574 6.22067 6.28268 6.29647 6.39888 6.44900 6.53708 6.67869 6.77272 6.84487 6.94756 7.50134 7.63248 8.29213 9.08725 9.18960 9.68780 10.32969 10.99159 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.005141 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.898876 B = 5444.878198 C = 6522.822129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.091 3.909 5 H 0.053 0.947 6 C -0.122 4.122 7 C -0.102 4.102 8 H 0.075 0.925 9 C 0.491 3.509 10 O -0.531 6.531 11 N -0.428 5.428 12 C -0.349 4.349 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.835 5.835 16 Si 0.911 3.089 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.286 1.286 20 C 0.078 3.922 21 C -0.178 4.178 22 C -0.208 4.208 23 C -0.153 4.153 24 C 0.065 3.935 25 O -0.382 6.382 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -12.714 -3.477 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.033 3.967 5 H 0.071 0.929 6 C -0.160 4.160 7 C -0.124 4.124 8 H 0.093 0.907 9 C 0.278 3.722 10 O -0.408 6.408 11 N -0.149 5.149 12 C -0.476 4.476 13 H 0.094 0.906 14 C -0.137 4.137 15 N -0.468 5.468 16 Si 0.738 3.262 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.212 1.212 20 C -0.029 4.029 21 C -0.216 4.216 22 C -0.247 4.247 23 C -0.191 4.191 24 C -0.012 4.012 25 O -0.301 6.301 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.889 -12.205 -3.429 13.261 hybrid contribution 0.540 0.979 0.313 1.161 sum -3.349 -11.227 -3.116 12.123 Atomic orbital electron populations 1.21784 0.96237 1.01218 1.01715 1.21481 0.95292 0.96909 1.02207 1.21626 0.93082 0.97222 1.02899 1.22179 0.94223 0.93635 0.86619 0.92916 1.21924 0.94528 0.95679 1.03859 1.21243 0.96270 0.97072 0.97813 0.90657 1.19655 0.82683 0.88834 0.81030 1.90522 1.54686 1.45590 1.50027 1.42760 1.02309 1.03695 1.66098 1.18876 1.24155 0.84884 1.19641 0.90594 1.25229 0.95124 0.99536 0.93768 1.69829 1.33505 1.35213 1.08252 0.86176 0.77922 0.84139 0.77968 1.19596 1.20670 1.21213 1.21712 0.88248 0.92789 1.00105 1.23109 0.96417 1.03134 0.98906 1.23326 1.07185 1.01773 0.92458 1.22401 1.02325 0.96283 0.98098 1.22552 0.81156 0.96145 1.01319 1.87855 1.20938 1.82419 1.38911 0.92788 0.93073 0.92915 0.91347 0.92441 0.90649 0.91116 0.90705 0.90645 0.92714 0.87878 0.87508 0.89931 0.89842 0.89052 0.89404 0.91047 0.93656 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.34 5.83 -26.74 -0.16 -1.50 16 3 C -0.11 -1.42 4.92 -26.73 -0.13 -1.55 16 4 C 0.09 1.34 2.64 -26.68 -0.07 1.27 16 5 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.12 -2.23 4.02 -26.59 -0.11 -2.33 16 7 C -0.10 -1.98 1.81 -91.59 -0.17 -2.14 16 8 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 9 C 0.49 12.39 6.37 -10.98 -0.07 12.32 16 10 O -0.53 -15.69 13.72 5.54 0.08 -15.62 16 11 N -0.43 -10.62 2.85 -107.73 -0.31 -10.93 16 12 C -0.35 -9.53 7.75 -14.93 -0.12 -9.65 16 13 H 0.08 2.02 7.50 -52.49 -0.39 1.63 16 14 C 0.07 2.08 4.39 -17.47 -0.08 2.01 16 15 N -0.83 -24.83 11.72 55.50 0.65 -24.18 16 16 Si 0.91 22.08 29.59 -169.99 -5.03 17.05 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.08 1.53 4.33 -67.93 -0.29 1.23 16 21 C -0.18 -3.19 9.81 -26.73 -0.26 -3.45 16 22 C -0.21 -3.49 9.50 -26.73 -0.25 -3.74 16 23 C -0.15 -2.49 5.01 -26.59 -0.13 -2.62 16 24 C 0.07 0.88 6.84 37.21 0.25 1.14 16 25 O -0.38 -5.78 9.94 -35.23 -0.35 -6.13 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.49 8.03 -51.93 -0.42 1.08 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.26 7.48 8.32 -40.82 -0.34 7.14 16 36 H 0.10 1.82 6.13 -51.93 -0.32 1.50 16 37 H 0.11 2.15 6.89 -51.93 -0.36 1.79 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 41 H 0.09 1.36 4.52 -51.93 -0.23 1.12 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -32.29 343.07 -8.58 -40.87 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.58 Total: 3.86 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.21 Total: -10.09 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.34 Total: -35.11 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.27 Total: -21.75 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.29 -8.58 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355491055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.379 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds