Wall clock time and date at job start Tue Mar 31 2020 05:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47173 * 2 1 4 4 C 1.53011 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47387 * 304.99281 * 4 3 2 6 6 C 1.53089 * 109.47872 * 184.97766 * 4 3 2 7 7 C 1.53180 * 109.15940 * 182.41678 * 6 4 3 8 8 H 1.08999 * 109.53648 * 297.09148 * 7 6 4 9 9 C 1.50702 * 109.61881 * 176.87703 * 7 6 4 10 10 O 1.21299 * 119.99461 * 0.38888 * 9 7 6 11 11 N 1.34776 * 120.00257 * 180.38712 * 9 7 6 12 12 C 1.37091 * 119.99897 * 179.97438 * 11 9 7 13 13 H 1.07996 * 120.00241 * 224.12559 * 12 11 9 14 14 C 1.38956 * 120.00134 * 44.13049 * 12 11 9 15 15 N 1.31402 * 119.99905 * 18.10141 * 14 12 11 16 16 Si 1.86803 * 120.00026 * 198.10569 * 14 12 11 17 17 H 1.48501 * 109.47011 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46895 * 119.99557 * 16 14 12 19 19 H 1.48503 * 109.46880 * 239.99730 * 16 14 12 20 20 C 1.46499 * 119.99778 * 359.97438 * 11 9 7 21 21 C 1.53000 * 117.49618 * 188.62831 * 20 11 9 22 22 C 1.53000 * 60.00178 * 252.51516 * 21 20 11 23 23 C 1.53173 * 109.04897 * 56.95939 * 7 6 4 24 24 C 1.53098 * 109.16151 * 303.02891 * 23 7 6 25 25 O 1.42896 * 109.48132 * 65.01815 * 4 3 2 26 26 H 1.09001 * 109.46755 * 60.00275 * 1 2 3 27 27 H 1.08999 * 109.47617 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47453 * 300.00886 * 1 2 3 29 29 H 1.09002 * 109.46928 * 239.99110 * 2 1 3 30 30 H 1.09001 * 109.46755 * 119.99725 * 2 1 3 31 31 H 1.08992 * 109.47857 * 59.99725 * 3 2 1 32 32 H 1.09001 * 109.47056 * 299.99541 * 3 2 1 33 33 H 1.08999 * 109.52313 * 302.30588 * 6 4 3 34 34 H 1.08999 * 109.52541 * 62.50004 * 6 4 3 35 35 H 0.97006 * 120.00405 * 174.90824 * 15 14 12 36 36 H 1.08995 * 115.55214 * 334.34008 * 20 11 9 37 37 H 1.08997 * 117.50171 * 0.02562 * 21 20 11 38 38 H 1.09002 * 117.49843 * 145.02097 * 21 20 11 39 39 H 1.09000 * 117.49615 * 252.51238 * 22 21 20 40 40 H 1.09003 * 117.49602 * 107.49014 * 22 21 20 41 41 H 1.08999 * 109.53018 * 183.11712 * 23 7 6 42 42 H 1.09005 * 109.57534 * 62.95903 * 23 7 6 43 43 H 1.08998 * 109.47805 * 297.61929 * 24 23 7 44 44 H 1.09008 * 109.48888 * 177.59362 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9338 0.8529 0.8410 6 6 4.0807 2.8802 0.1246 7 6 5.6112 2.8774 0.0624 8 1 6.0094 2.3190 0.9097 9 6 6.1221 4.2944 0.1078 10 8 5.3405 5.2184 0.1896 11 7 7.4472 4.5350 0.0574 12 6 7.9118 5.8241 0.0981 13 1 8.6953 6.1374 -0.5760 14 6 7.3748 6.7279 1.0068 15 7 6.6995 6.2917 2.0462 16 14 7.6129 8.5629 0.7508 17 1 8.4044 8.7917 -0.4847 18 1 6.2879 9.2203 0.6193 19 1 8.3363 9.1353 1.9146 20 6 8.3911 3.4189 -0.0409 21 6 9.8800 3.7376 0.1090 22 6 9.3094 3.3761 -1.2639 23 6 6.0573 2.2134 -1.2439 24 6 5.4702 0.8013 -1.3159 25 8 4.0461 0.8736 -1.2220 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 3.6842 3.4801 -0.6945 34 1 3.7554 3.3007 1.0761 35 1 6.3880 6.9168 2.7194 36 1 8.0372 2.4676 0.3564 37 1 10.1572 4.7776 0.2810 38 1 10.5060 2.9960 0.6051 39 1 9.5601 2.3965 -1.6709 40 1 9.2114 4.1783 -1.9953 41 1 7.1455 2.1574 -1.2710 42 1 5.7015 2.7994 -2.0914 43 1 5.8591 0.2036 -0.4915 44 1 5.7491 0.3394 -2.2630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355491055.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:34 Heat of formation + Delta-G solvation = -82.720428 kcal Electronic energy + Delta-G solvation = -23467.793429 eV Core-core repulsion = 20191.965103 eV Total energy + Delta-G solvation = -3275.828326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22529 -39.68093 -37.79248 -35.91142 -35.05368 -34.24508 -32.74363 -32.05559 -28.30235 -27.45342 -25.34367 -23.82446 -23.11667 -22.77740 -22.02917 -21.68010 -20.55220 -18.34790 -17.84494 -17.41255 -16.88260 -16.75008 -15.89931 -15.79060 -15.57555 -15.35631 -15.29013 -14.79831 -14.41662 -14.12141 -13.93716 -13.58763 -13.44982 -13.15699 -12.96495 -12.81204 -12.71407 -12.42437 -12.27284 -12.26663 -12.16140 -12.04065 -11.86306 -11.66627 -11.48158 -11.44157 -11.18564 -11.08231 -10.74543 -10.49716 -9.81799 -8.95277 -8.22039 -5.99779 1.31962 1.39851 1.47281 2.23440 2.39139 2.88749 3.04819 3.11932 3.35646 3.69100 3.84794 3.94422 4.00417 4.10374 4.15080 4.19431 4.24305 4.33892 4.36656 4.41450 4.52561 4.58767 4.69496 4.79862 4.81286 4.84939 4.90303 4.90779 4.99319 5.05811 5.11423 5.14760 5.24182 5.30748 5.30820 5.36403 5.43181 5.47049 5.49789 5.52788 6.19480 6.35452 7.03140 7.21191 7.70611 8.37393 8.86970 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.005141 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.898876 B = 5444.878198 C = 6522.822129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.101 3.899 5 H 0.069 0.931 6 C -0.116 4.116 7 C -0.094 4.094 8 H 0.088 0.912 9 C 0.472 3.528 10 O -0.591 6.591 11 N -0.442 5.442 12 C -0.356 4.356 13 H 0.076 0.924 14 C 0.021 3.979 15 N -0.873 5.873 16 Si 0.967 3.033 17 H -0.258 1.258 18 H -0.296 1.296 19 H -0.271 1.271 20 C 0.048 3.952 21 C -0.176 4.176 22 C -0.178 4.178 23 C -0.144 4.144 24 C 0.066 3.934 25 O -0.389 6.389 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.258 0.742 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.048 0.952 43 H 0.069 0.931 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -15.548 -4.245 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.148 4.148 4 C 0.043 3.957 5 H 0.087 0.913 6 C -0.155 4.155 7 C -0.115 4.115 8 H 0.106 0.894 9 C 0.261 3.739 10 O -0.472 6.472 11 N -0.162 5.162 12 C -0.484 4.484 13 H 0.093 0.907 14 C -0.184 4.184 15 N -0.508 5.508 16 Si 0.792 3.208 17 H -0.182 1.182 18 H -0.223 1.223 19 H -0.197 1.197 20 C -0.057 4.057 21 C -0.214 4.214 22 C -0.217 4.217 23 C -0.181 4.181 24 C -0.010 4.010 25 O -0.308 6.308 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.702 -15.069 -4.217 15.880 hybrid contribution 0.258 1.858 0.492 1.940 sum -2.444 -13.211 -3.725 13.942 Atomic orbital electron populations 1.21774 0.95147 1.02160 1.01764 1.21426 0.96231 0.95165 1.02422 1.21644 0.91886 0.98774 1.02546 1.22118 0.95291 0.90970 0.87278 0.91280 1.21868 0.94120 0.97989 1.01507 1.21185 0.96601 0.93555 1.00185 0.89432 1.20717 0.82608 0.90814 0.79719 1.90471 1.56208 1.47952 1.52587 1.42982 1.03315 1.04414 1.65513 1.19114 1.23514 0.86767 1.18956 0.90650 1.26033 0.95197 1.03506 0.93713 1.69935 1.35498 1.36133 1.09265 0.85301 0.77155 0.79471 0.78839 1.18186 1.22344 1.19658 1.22035 0.88229 0.92038 1.03434 1.23163 0.95371 1.02586 1.00281 1.23344 1.03924 1.03363 0.91067 1.22356 1.03202 0.97566 0.95010 1.22737 0.80081 0.94259 1.03918 1.87866 1.22097 1.81960 1.38926 0.93035 0.91670 0.92655 0.91718 0.91532 0.90458 0.92173 0.93498 0.92864 0.93255 0.85377 0.90436 0.86396 0.85283 0.90970 0.88078 0.93282 0.91284 0.86371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.11 -2.30 5.83 30.59 0.18 -2.13 16 3 C -0.11 -2.77 4.92 30.60 0.15 -2.62 16 4 C 0.10 2.86 2.64 30.63 0.08 2.94 16 5 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 6 C -0.12 -4.37 4.02 30.68 0.12 -4.25 16 7 C -0.09 -3.62 1.81 -11.42 -0.02 -3.64 16 8 H 0.09 3.15 7.58 -2.39 -0.02 3.13 16 9 C 0.47 24.59 6.37 87.66 0.56 25.14 16 10 O -0.59 -36.85 13.72 -3.09 -0.04 -36.89 16 11 N -0.44 -22.24 2.85 -613.13 -1.75 -23.98 16 12 C -0.36 -19.91 7.75 84.04 0.65 -19.26 16 13 H 0.08 4.10 7.50 -2.91 -0.02 4.08 16 14 C 0.02 1.25 4.39 84.93 0.37 1.62 16 15 N -0.87 -54.08 11.72 21.66 0.25 -53.82 16 16 Si 0.97 46.70 29.59 68.60 2.03 48.73 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 C 0.05 1.78 4.33 44.99 0.20 1.97 16 21 C -0.18 -5.91 9.81 30.59 0.30 -5.61 16 22 C -0.18 -5.41 9.50 30.60 0.29 -5.12 16 23 C -0.14 -4.39 5.01 30.68 0.15 -4.24 16 24 C 0.07 1.55 6.84 72.01 0.49 2.04 16 25 O -0.39 -10.85 9.94 -148.98 -1.48 -12.33 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.36 7.82 -2.39 -0.02 1.34 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.98 8.03 -2.39 -0.02 1.96 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.26 15.40 8.32 -92.70 -0.77 14.63 16 36 H 0.13 4.10 6.13 -2.39 -0.01 4.09 16 37 H 0.08 3.08 6.89 -2.39 -0.02 3.06 16 38 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.10 2.80 4.52 -2.39 -0.01 2.79 16 42 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -74.56 343.07 4.21 -70.35 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.96 Total: 22.97 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.24 Total: -15.02 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.49 Total: -77.80 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.52 Total: -49.22 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.56 4.21 -70.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355491055.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.372 kcal (2) G-P(sol) polarization free energy of solvation -74.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds