Wall clock time and date at job start Tue Mar 31 2020 05:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46635 * 2 1 4 4 C 1.53007 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.49144 * 305.03504 * 4 3 2 6 6 C 1.53091 * 109.48120 * 184.99803 * 4 3 2 7 7 C 1.53173 * 109.16286 * 182.41015 * 6 4 3 8 8 H 1.08997 * 109.54477 * 176.94121 * 7 6 4 9 9 C 1.50703 * 109.54439 * 297.11895 * 7 6 4 10 10 O 1.21283 * 120.00210 * 8.60054 * 9 7 6 11 11 N 1.34783 * 119.99562 * 188.32477 * 9 7 6 12 12 C 1.37106 * 119.99419 * 175.10675 * 11 9 7 13 13 H 1.08000 * 119.99533 * 325.22485 * 12 11 9 14 14 C 1.38942 * 119.99602 * 145.23252 * 12 11 9 15 15 N 1.31412 * 120.00658 * 3.83117 * 14 12 11 16 16 Si 1.86805 * 119.99626 * 183.82798 * 14 12 11 17 17 H 1.48500 * 109.47165 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46926 * 119.99749 * 16 14 12 19 19 H 1.48497 * 109.47160 * 239.99697 * 16 14 12 20 20 C 1.46498 * 120.00447 * 355.10436 * 11 9 7 21 21 C 1.52998 * 117.49946 * 132.84737 * 20 11 9 22 22 C 1.52998 * 117.49842 * 64.22144 * 20 11 9 23 23 C 1.53185 * 109.11040 * 57.02914 * 7 6 4 24 24 C 1.53286 * 109.06169 * 303.06178 * 23 7 6 25 25 O 1.42902 * 109.46432 * 57.55098 * 24 23 7 26 26 H 1.08998 * 109.46700 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47064 * 299.99335 * 1 2 3 28 28 H 1.08990 * 109.47076 * 60.00001 * 1 2 3 29 29 H 1.08997 * 109.47064 * 240.00665 * 2 1 3 30 30 H 1.09003 * 109.47286 * 119.99923 * 2 1 3 31 31 H 1.09005 * 109.47116 * 60.00463 * 3 2 1 32 32 H 1.08995 * 109.47502 * 300.00530 * 3 2 1 33 33 H 1.09004 * 109.51659 * 62.50875 * 6 4 3 34 34 H 1.08997 * 109.52329 * 302.32159 * 6 4 3 35 35 H 0.96995 * 120.00269 * 185.00704 * 15 14 12 36 36 H 1.09003 * 115.54605 * 278.55856 * 20 11 9 37 37 H 1.09002 * 117.49970 * 359.97438 * 21 20 11 38 38 H 1.08997 * 117.49702 * 145.02463 * 21 20 11 39 39 H 1.08998 * 117.49824 * 214.98122 * 22 20 11 40 40 H 1.09004 * 117.49576 * 0.02562 * 22 20 11 41 41 H 1.08999 * 109.51697 * 62.87722 * 23 7 6 42 42 H 1.08994 * 109.52232 * 183.06848 * 23 7 6 43 43 H 1.09001 * 109.45399 * 297.55674 * 24 23 7 44 44 H 1.08993 * 109.46435 * 177.55717 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9334 0.8529 0.8422 6 6 4.0804 2.8804 0.1264 7 6 5.6110 2.8778 0.0657 8 1 5.9791 3.9031 0.1001 9 6 6.1606 2.1053 1.2372 10 8 5.4115 1.4755 1.9536 11 7 7.4854 2.1098 1.4854 12 6 7.9747 1.4911 2.6069 13 1 7.4008 1.4991 3.5218 14 6 9.2088 0.8541 2.5662 15 7 9.9409 0.9086 1.4763 16 14 9.8274 -0.0798 4.0611 17 1 8.8228 0.0092 5.1510 18 1 10.0413 -1.5046 3.7009 19 1 11.1096 0.5127 4.5192 20 6 8.4024 2.7757 0.5571 21 6 9.4599 3.7063 1.1544 22 6 8.2669 4.2911 0.3955 23 6 6.0599 2.2157 -1.2407 24 6 5.4712 0.8023 -1.3137 25 8 4.0470 0.8743 -1.2208 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5138 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.7543 3.3007 1.0778 34 1 3.6844 3.4805 -0.6928 35 1 10.7679 0.4047 1.4218 36 1 8.6798 2.1983 -0.3248 37 1 9.4730 3.8234 2.2380 38 1 10.4334 3.7412 0.6654 39 1 8.4557 4.7107 -0.5926 40 1 7.4957 4.7926 0.9802 41 1 5.7038 2.8024 -2.0874 42 1 7.1482 2.1611 -1.2661 43 1 5.8594 0.2042 -0.4892 44 1 5.7508 0.3408 -2.2607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355491056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:38 Heat of formation + Delta-G solvation = -64.798884 kcal Electronic energy + Delta-G solvation = -23938.797005 eV Core-core repulsion = 20663.745816 eV Total energy + Delta-G solvation = -3275.051189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.96563 -37.89934 -36.01819 -34.71122 -33.34718 -32.62180 -31.22108 -30.59850 -26.97609 -25.59986 -23.81856 -22.56379 -21.71860 -21.33263 -20.64369 -20.55164 -18.19148 -16.90559 -15.98238 -15.76958 -15.51300 -15.17432 -14.46383 -14.45153 -14.13576 -13.97201 -13.66250 -13.29341 -13.11465 -12.70192 -12.37612 -12.20189 -11.94045 -11.70259 -11.54701 -11.21544 -11.16221 -11.04400 -10.86173 -10.70538 -10.57267 -10.54284 -10.38628 -10.26833 -10.10258 -9.89092 -9.57785 -9.34328 -8.96285 -8.72410 -8.08851 -7.59751 -6.30677 -3.96307 3.15736 3.26043 3.31850 3.86880 4.12190 4.30245 4.72376 4.76327 4.97516 5.09773 5.24295 5.29378 5.33591 5.42262 5.48187 5.59919 5.74155 5.77751 5.80586 5.83831 5.94408 6.00787 6.04320 6.06775 6.10720 6.19438 6.23840 6.25672 6.32299 6.39981 6.42652 6.47862 6.53620 6.56585 6.63978 6.77463 6.84912 6.94099 7.17397 7.55294 7.81572 8.19978 8.50705 9.19679 9.39912 9.99045 10.75149 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020149 B = 0.005618 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.280726 B = 4982.535599 C = 5729.605928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.107 4.107 4 C 0.075 3.925 5 H 0.100 0.900 6 C -0.122 4.122 7 C -0.107 4.107 8 H 0.088 0.912 9 C 0.467 3.533 10 O -0.578 6.578 11 N -0.423 5.423 12 C -0.308 4.308 13 H 0.090 0.910 14 C 0.045 3.955 15 N -0.872 5.872 16 Si 0.916 3.084 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.283 1.283 20 C 0.134 3.866 21 C -0.136 4.136 22 C -0.230 4.230 23 C -0.144 4.144 24 C 0.064 3.936 25 O -0.387 6.387 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.266 0.734 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 3.646 -5.970 10.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.144 4.144 4 C 0.018 3.982 5 H 0.117 0.883 6 C -0.160 4.160 7 C -0.128 4.128 8 H 0.106 0.894 9 C 0.256 3.744 10 O -0.462 6.462 11 N -0.141 5.141 12 C -0.436 4.436 13 H 0.108 0.892 14 C -0.160 4.160 15 N -0.510 5.510 16 Si 0.743 3.257 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.209 1.209 20 C 0.028 3.972 21 C -0.173 4.173 22 C -0.268 4.268 23 C -0.182 4.182 24 C -0.013 4.013 25 O -0.307 6.307 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.667 3.243 -5.774 10.131 hybrid contribution 0.921 -0.237 0.819 1.255 sum -6.746 3.006 -4.955 8.894 Atomic orbital electron populations 1.21781 0.96527 1.01125 1.01331 1.21472 0.94838 0.97130 1.02553 1.21591 0.93977 0.97126 1.01712 1.22542 0.93207 0.93969 0.88432 0.88298 1.21901 0.94408 0.98030 1.01649 1.21333 0.95936 1.00660 0.94893 0.89376 1.20056 0.82991 0.84674 0.86710 1.90425 1.57201 1.46915 1.51706 1.43057 1.03455 1.46575 1.21053 1.19466 1.02603 1.31530 0.89991 0.89227 1.25347 0.96430 0.96396 0.97796 1.69866 1.14182 1.39626 1.27292 0.86026 0.78488 0.79451 0.81735 1.19356 1.20666 1.20869 1.21179 0.95074 0.85785 0.95115 1.22648 0.92814 1.02319 0.99553 1.23583 1.02865 0.98832 1.01538 1.22201 1.02283 0.97284 0.96449 1.22498 0.81169 0.96002 1.01640 1.87768 1.20779 1.82753 1.39357 0.93139 0.93047 0.93075 0.91452 0.92058 0.91143 0.92091 0.91176 0.92028 0.92390 0.87755 0.89325 0.89822 0.89604 0.89875 0.91433 0.89771 0.92677 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.69 5.83 -26.73 -0.16 -1.85 16 3 C -0.11 -1.56 4.92 -26.73 -0.13 -1.69 16 4 C 0.08 1.35 2.36 -26.68 -0.06 1.28 16 5 H 0.10 2.13 5.50 -51.93 -0.29 1.84 16 6 C -0.12 -2.09 4.59 -26.59 -0.12 -2.21 16 7 C -0.11 -1.97 2.24 -91.59 -0.20 -2.18 16 8 H 0.09 1.53 5.61 -51.93 -0.29 1.23 16 9 C 0.47 10.91 5.66 -10.98 -0.06 10.85 16 10 O -0.58 -15.18 13.47 5.55 0.07 -15.10 16 11 N -0.42 -10.32 2.91 -107.73 -0.31 -10.64 16 12 C -0.31 -8.31 8.55 -14.93 -0.13 -8.43 16 13 H 0.09 2.55 7.68 -52.49 -0.40 2.15 16 14 C 0.04 1.15 5.17 -17.47 -0.09 1.06 16 15 N -0.87 -22.28 10.59 55.50 0.59 -21.69 16 16 Si 0.92 20.60 29.56 -169.99 -5.02 15.58 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.13 2.84 2.31 -67.93 -0.16 2.69 16 21 C -0.14 -2.73 8.78 -26.73 -0.23 -2.96 16 22 C -0.23 -4.03 8.60 -26.73 -0.23 -4.26 16 23 C -0.14 -2.44 5.50 -26.49 -0.15 -2.58 16 24 C 0.06 1.14 6.62 37.31 0.25 1.39 16 25 O -0.39 -7.03 9.95 -35.23 -0.35 -7.38 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 36 H 0.11 2.29 6.69 -51.93 -0.35 1.95 16 37 H 0.09 1.94 7.97 -51.93 -0.41 1.52 16 38 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.47 7.34 -51.93 -0.38 1.09 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.46 5.18 -51.93 -0.27 1.19 16 43 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -28.36 336.03 -8.46 -36.82 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.39 Total: 7.56 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.11 Total: -10.21 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.27 Total: -32.33 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.28 Total: -22.48 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.36 -8.46 -36.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355491056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.980 kcal (2) G-P(sol) polarization free energy of solvation -28.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds