Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47218 * 2 1 4 4 C 1.52998 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.49477 * 54.96237 * 4 3 2 6 6 C 1.53086 * 109.47919 * 175.00111 * 4 3 2 7 7 C 1.53184 * 109.21388 * 177.62242 * 6 4 3 8 8 H 1.09004 * 109.54198 * 183.02822 * 7 6 4 9 9 C 1.50702 * 109.54565 * 62.84931 * 7 6 4 10 10 O 1.21287 * 119.99817 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99810 * 180.02562 * 9 7 6 12 12 C 1.37095 * 119.99693 * 180.02562 * 11 9 7 13 13 H 1.08004 * 119.99688 * 224.22070 * 12 11 9 14 14 C 1.38949 * 120.00507 * 44.22440 * 12 11 9 15 15 N 1.31411 * 119.99612 * 18.01887 * 14 12 11 16 16 Si 1.86800 * 120.00549 * 198.02547 * 14 12 11 17 17 H 1.48491 * 109.47145 * 89.99496 * 16 14 12 18 18 H 1.48498 * 109.47184 * 209.99740 * 16 14 12 19 19 H 1.48502 * 109.46554 * 329.99723 * 16 14 12 20 20 C 1.46493 * 120.00195 * 359.97438 * 11 9 7 21 21 C 1.53003 * 117.50137 * 190.11002 * 20 11 9 22 22 C 1.52999 * 60.00242 * 252.50893 * 21 20 11 23 23 C 1.53183 * 109.03296 * 302.98050 * 7 6 4 24 24 C 1.53096 * 109.15931 * 56.98343 * 23 7 6 25 25 O 1.42901 * 109.41544 * 302.38709 * 24 23 7 26 26 H 1.09007 * 109.46833 * 60.00822 * 1 2 3 27 27 H 1.09000 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47562 * 300.00464 * 1 2 3 29 29 H 1.08997 * 109.47562 * 239.99536 * 2 1 3 30 30 H 1.09007 * 109.46833 * 119.99178 * 2 1 3 31 31 H 1.08997 * 109.47233 * 59.99335 * 3 2 1 32 32 H 1.09007 * 109.46547 * 299.99353 * 3 2 1 33 33 H 1.08997 * 109.52682 * 57.68075 * 6 4 3 34 34 H 1.09009 * 109.52014 * 297.55067 * 6 4 3 35 35 H 0.97007 * 120.00176 * 174.92827 * 15 14 12 36 36 H 1.09003 * 115.55485 * 335.81988 * 20 11 9 37 37 H 1.09000 * 117.49668 * 0.02562 * 21 20 11 38 38 H 1.09005 * 117.49751 * 145.01885 * 21 20 11 39 39 H 1.08997 * 117.50128 * 252.50730 * 22 21 20 40 40 H 1.09001 * 117.51590 * 107.47707 * 22 21 20 41 41 H 1.08995 * 109.51935 * 176.88700 * 23 7 6 42 42 H 1.08994 * 109.52085 * 297.01350 * 23 7 6 43 43 H 1.08996 * 109.47961 * 62.37258 * 24 23 7 44 44 H 1.08998 * 109.47611 * 182.39446 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9334 0.8528 -0.8421 6 6 4.0805 2.8803 -0.1264 7 6 5.6111 2.8789 -0.0667 8 1 5.9783 3.9046 -0.1017 9 6 6.1607 2.1064 -1.2382 10 8 5.4040 1.6058 -2.0431 11 7 7.4929 1.9718 -1.3913 12 6 7.9928 1.2695 -2.4573 13 1 8.7991 0.5661 -2.3102 14 6 7.4624 1.4627 -3.7269 15 7 6.7515 2.5372 -3.9854 16 14 7.7595 0.1949 -5.0663 17 1 6.6746 -0.8186 -5.0380 18 1 7.7742 0.8675 -6.3901 19 1 9.0661 -0.4720 -4.8353 20 6 8.4068 2.5769 -0.4193 21 6 9.8966 2.5959 -0.7671 22 6 9.3755 1.6467 0.3138 23 6 6.0595 2.2165 1.2397 24 6 5.4738 0.8039 1.3136 25 8 4.0495 0.8748 1.2216 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.6845 3.4805 0.6928 34 1 3.7535 3.3011 -1.0774 35 1 6.4432 2.7091 -4.8890 36 1 8.0082 3.4265 0.1352 37 1 10.1967 2.1586 -1.7194 38 1 10.4784 3.4583 -0.4417 39 1 9.6145 1.8846 1.3503 40 1 9.3325 0.5845 0.0731 41 1 7.1477 2.1614 1.2653 42 1 5.7044 2.8038 2.0864 43 1 5.8620 0.2059 0.4893 44 1 5.7545 0.3432 2.2607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355491057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = -59.490121 kcal Electronic energy + Delta-G solvation = -24095.148328 eV Core-core repulsion = 20820.327344 eV Total energy + Delta-G solvation = -3274.820984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86295 -37.83811 -36.00799 -34.69424 -33.26587 -32.50622 -31.03839 -30.48485 -26.91659 -25.57927 -23.69620 -22.50639 -21.74904 -21.43193 -20.66351 -20.37211 -18.66522 -16.20709 -15.97841 -15.95730 -15.62642 -14.81291 -14.47686 -14.30709 -14.15355 -13.92532 -13.61831 -13.23342 -12.90153 -12.63882 -12.38933 -12.05922 -11.85620 -11.78393 -11.43599 -11.15854 -10.98016 -10.93983 -10.90534 -10.80761 -10.63853 -10.50695 -10.34631 -10.18494 -10.11516 -9.95475 -9.72667 -9.58566 -8.87385 -8.66843 -7.87246 -6.99016 -6.11886 -3.87667 3.29398 3.36082 3.39447 4.09285 4.25185 4.30029 4.76739 4.82084 5.02594 5.22589 5.27170 5.31545 5.38314 5.44141 5.50764 5.55774 5.61030 5.73900 5.77656 5.80130 5.84878 5.98455 6.03978 6.05263 6.11283 6.17317 6.20626 6.22094 6.28726 6.39750 6.42993 6.46005 6.53461 6.58151 6.61297 6.67858 6.74006 6.86866 6.94984 7.61299 7.81082 8.27112 9.06751 9.16222 9.66590 10.30279 10.97035 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.006870 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.391386 B = 4074.573096 C = 5236.928621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.106 4.106 4 C 0.081 3.919 5 H 0.092 0.908 6 C -0.119 4.119 7 C -0.109 4.109 8 H 0.079 0.921 9 C 0.491 3.509 10 O -0.529 6.529 11 N -0.426 5.426 12 C -0.349 4.349 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.833 5.833 16 Si 0.911 3.089 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.076 3.924 21 C -0.178 4.178 22 C -0.208 4.208 23 C -0.152 4.152 24 C 0.066 3.934 25 O -0.388 6.388 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.263 0.737 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 0.193 9.783 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.144 4.144 4 C 0.024 3.976 5 H 0.110 0.890 6 C -0.158 4.158 7 C -0.131 4.131 8 H 0.097 0.903 9 C 0.278 3.722 10 O -0.406 6.406 11 N -0.147 5.147 12 C -0.476 4.476 13 H 0.094 0.906 14 C -0.136 4.136 15 N -0.467 5.467 16 Si 0.738 3.262 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.030 4.030 21 C -0.216 4.216 22 C -0.247 4.247 23 C -0.190 4.190 24 C -0.011 4.011 25 O -0.308 6.308 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.889 -0.057 9.343 10.120 hybrid contribution 0.569 -0.149 -0.892 1.068 sum -3.321 -0.206 8.451 9.082 Atomic orbital electron populations 1.21779 0.96506 1.01100 1.01367 1.21473 0.94887 0.97141 1.02473 1.21582 0.93828 0.97120 1.01830 1.22431 0.93330 0.93985 0.87836 0.89033 1.21851 0.94276 0.97703 1.01920 1.21321 0.96394 1.00174 0.95183 0.90302 1.19655 0.82655 0.83722 0.86136 1.90466 1.56294 1.49552 1.44329 1.42765 1.02449 1.47643 1.21797 1.18835 1.22100 1.21150 0.85502 0.90630 1.25218 0.95138 0.95301 0.97914 1.69825 1.32688 1.23754 1.20404 0.86242 0.78420 0.81428 0.80116 1.20339 1.21335 1.19939 1.21739 0.88139 0.97099 0.96037 1.23109 0.97009 1.01016 1.00429 1.23315 1.07132 0.98137 0.96126 1.22365 1.02433 0.97490 0.96734 1.22423 0.81300 0.95920 1.01426 1.87788 1.20700 1.82850 1.39475 0.93004 0.93157 0.93075 0.92077 0.91507 0.92053 0.90988 0.92276 0.90644 0.92648 0.87783 0.87501 0.89950 0.89835 0.89041 0.89453 0.91668 0.92775 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.76 5.83 -26.73 -0.16 -1.92 16 3 C -0.11 -1.64 4.93 -26.73 -0.13 -1.77 16 4 C 0.08 1.50 2.36 -26.69 -0.06 1.44 16 5 H 0.09 2.05 5.80 -51.93 -0.30 1.75 16 6 C -0.12 -2.19 4.55 -26.59 -0.12 -2.32 16 7 C -0.11 -2.11 2.24 -91.58 -0.20 -2.31 16 8 H 0.08 1.47 7.57 -51.93 -0.39 1.08 16 9 C 0.49 11.95 5.03 -10.99 -0.06 11.89 16 10 O -0.53 -14.82 11.59 5.55 0.06 -14.75 16 11 N -0.43 -10.31 2.85 -107.73 -0.31 -10.62 16 12 C -0.35 -9.33 7.69 -14.93 -0.11 -9.44 16 13 H 0.08 1.98 7.57 -52.48 -0.40 1.58 16 14 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 15 N -0.83 -24.36 11.72 55.50 0.65 -23.70 16 16 Si 0.91 21.81 29.59 -169.99 -5.03 16.78 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.08 1.48 4.33 -67.93 -0.29 1.19 16 21 C -0.18 -3.17 9.82 -26.73 -0.26 -3.43 16 22 C -0.21 -3.45 9.48 -26.73 -0.25 -3.70 16 23 C -0.15 -2.50 5.26 -26.59 -0.14 -2.64 16 24 C 0.07 1.14 6.62 37.21 0.25 1.38 16 25 O -0.39 -7.06 9.96 -35.23 -0.35 -7.41 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.99 7.83 -51.92 -0.41 0.58 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.49 8.03 -51.92 -0.42 1.08 16 35 H 0.26 7.42 8.32 -40.82 -0.34 7.08 16 36 H 0.10 1.83 6.13 -51.93 -0.32 1.51 16 37 H 0.11 2.14 6.94 -51.93 -0.36 1.78 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.09 1.38 4.48 -51.93 -0.23 1.15 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 1.08 7.38 -51.93 -0.38 0.70 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -30.86 337.22 -8.57 -39.43 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.42 Total: 6.21 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.26 Total: -11.02 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.34 Total: -34.32 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.29 Total: -22.16 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.86 -8.57 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355491057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.058 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds