Wall clock time and date at job start Tue Mar 31 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99819 * 2 1 4 4 N 1.46496 * 109.46959 * 125.00181 * 3 2 1 5 5 C 1.46497 * 120.00129 * 269.99625 * 4 3 2 6 6 C 1.50709 * 109.47273 * 270.00327 * 5 4 3 7 7 H 1.07999 * 119.99476 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00210 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99914 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46996 * 90.00193 * 10 8 6 12 12 H 1.48502 * 109.46931 * 210.00078 * 10 8 6 13 13 H 1.48498 * 109.47167 * 330.00145 * 10 8 6 14 14 C 1.34777 * 120.00345 * 90.00118 * 4 3 2 15 15 O 1.21283 * 120.00463 * 179.97438 * 14 4 3 16 16 C 1.50700 * 119.99675 * 359.72090 * 14 4 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 4 18 18 H 1.09000 * 109.47217 * 54.99834 * 17 16 14 19 19 C 1.53000 * 109.46787 * 294.99932 * 17 16 14 20 20 C 1.53004 * 109.46787 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47195 * 59.99765 * 20 19 17 22 22 C 1.53000 * 109.47445 * 299.99832 * 21 20 19 23 23 C 1.52995 * 109.47195 * 174.99698 * 17 16 14 24 24 H 1.08992 * 109.47370 * 300.00039 * 23 17 16 25 25 O 1.42904 * 109.47054 * 60.00182 * 23 17 16 26 26 H 1.08005 * 120.00122 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99858 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99899 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47562 * 4.99714 * 3 2 1 30 30 H 1.09002 * 109.47106 * 245.00032 * 3 2 1 31 31 H 1.09000 * 109.46889 * 29.99981 * 5 4 3 32 32 H 1.09001 * 109.47460 * 150.00590 * 5 4 3 33 33 H 0.97000 * 120.00447 * 179.97438 * 9 8 6 34 34 H 1.09009 * 109.47352 * 300.27556 * 16 14 4 35 35 H 1.08998 * 109.47585 * 60.27844 * 16 14 4 36 36 H 1.09000 * 109.47161 * 299.99935 * 19 17 16 37 37 H 1.09003 * 109.47289 * 60.00086 * 19 17 16 38 38 H 1.08998 * 109.47252 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.46771 * 299.99612 * 20 19 17 40 40 H 1.09000 * 109.46927 * 59.99958 * 21 20 19 41 41 H 1.09004 * 109.46944 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.47289 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47161 * 299.99983 * 22 21 20 44 44 H 0.96695 * 113.99846 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3437 2.4803 7 1 3.3040 3.8369 1.6367 8 6 2.5185 4.0668 3.6081 9 7 1.9591 3.4660 4.6356 10 14 2.8729 5.8996 3.6772 11 1 1.7006 6.6502 3.1599 12 1 3.1362 6.3001 5.0827 13 1 4.0634 6.2053 2.8440 14 6 4.2497 0.8662 0.9824 15 8 5.0200 0.8888 1.9189 16 6 4.6951 0.3122 -0.3464 17 6 6.1497 -0.1511 -0.2441 18 1 6.2482 -0.8604 0.5776 19 6 7.0526 1.0569 0.0140 20 6 8.5073 0.5937 0.1157 21 6 8.9203 -0.0813 -1.1937 22 6 8.0175 -1.2893 -1.4518 23 6 6.5632 -0.8265 -1.5531 24 1 5.9200 -1.6870 -1.7370 25 8 6.4341 0.1035 -2.6304 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6212 1.4026 -0.9314 31 1 1.4888 1.6966 2.5459 32 1 3.0990 1.3604 3.2259 33 1 1.7302 3.9746 5.4293 34 1 4.0628 -0.5333 -0.6180 35 1 4.6133 1.0867 -1.1089 36 1 6.9541 1.7662 -0.8077 37 1 6.7580 1.5380 0.9467 38 1 9.1505 1.4541 0.3000 39 1 8.6061 -0.1158 0.9372 40 1 8.8215 0.6283 -2.0152 41 1 9.9569 -0.4109 -1.1214 42 1 8.3115 -1.7699 -2.3849 43 1 8.1163 -1.9988 -0.6303 44 1 6.6797 -0.2575 -3.4932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359379923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:59 Heat of formation + Delta-G solvation = -88.892755 kcal Electronic energy + Delta-G solvation = -23099.613162 eV Core-core repulsion = 19823.517184 eV Total energy + Delta-G solvation = -3276.095978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80103 -38.44063 -35.66981 -34.92137 -33.23846 -32.35946 -31.97387 -29.82854 -28.12269 -26.38146 -25.22364 -22.91281 -22.46415 -21.22891 -19.88281 -19.60047 -18.16938 -16.87144 -16.46933 -16.20345 -15.73038 -15.24586 -14.79816 -14.49500 -14.41606 -14.29347 -13.77149 -13.51283 -12.91755 -12.79712 -12.53164 -12.39861 -12.01997 -11.77684 -11.66775 -11.55993 -11.36473 -11.19076 -10.97746 -10.85042 -10.78161 -10.57172 -10.50729 -10.29734 -10.13425 -9.91041 -9.64924 -9.57376 -9.13647 -8.67651 -8.39195 -7.59998 -5.99904 -4.04306 2.49198 3.32730 3.39224 3.43516 3.54595 4.07992 4.25383 4.48401 4.73472 4.76166 4.89516 5.12996 5.22108 5.30127 5.33964 5.38304 5.42911 5.45466 5.55802 5.59307 5.65512 5.75499 5.78392 5.87213 5.98201 6.04559 6.05962 6.17092 6.25065 6.29676 6.35050 6.42700 6.73028 6.82720 6.85839 6.95922 7.16036 7.51014 7.62710 7.64083 7.97203 8.29112 8.50727 8.96085 9.19368 9.60789 11.08137 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.005157 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.245511 B = 5428.161209 C = 6664.136504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.165 4.165 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.505 3.495 15 O -0.539 6.539 16 C -0.132 4.132 17 C -0.059 4.059 18 H 0.085 0.915 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.109 3.891 24 H 0.051 0.949 25 O -0.558 6.558 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 -10.178 -15.328 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.185 4.185 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.128 3.872 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.292 3.708 15 O -0.417 6.417 16 C -0.172 4.172 17 C -0.078 4.078 18 H 0.103 0.897 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.188 4.188 23 C 0.050 3.950 24 H 0.069 0.931 25 O -0.363 6.363 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.574 -9.716 -14.121 18.358 hybrid contribution 0.182 0.521 -0.359 0.659 sum 6.756 -9.194 -14.479 18.435 Atomic orbital electron populations 1.23805 0.95863 1.01687 1.00945 1.23434 0.96353 0.99096 0.99583 1.20567 0.93127 0.95120 0.89981 1.48231 1.10662 1.60346 1.13398 1.19244 0.95266 0.93712 0.78998 1.21449 1.40231 0.93392 1.01179 0.92499 1.24926 0.95141 0.98665 0.95362 1.69939 1.42267 1.36074 1.05184 0.86521 0.78603 0.85150 0.77299 1.20686 1.21132 1.19892 1.20431 0.82111 0.78446 0.89805 1.90621 1.52215 1.56694 1.42205 1.21705 0.96721 1.01932 0.96881 1.20901 0.93747 0.98551 0.94591 0.89686 1.21635 0.93147 0.97141 1.03516 1.21506 0.97154 0.99974 0.96815 1.21447 0.97834 0.97134 0.98736 1.22215 0.96265 0.98524 1.01780 1.21849 0.94392 0.90895 0.87832 0.93143 1.86578 1.90449 1.41385 1.17852 0.88316 0.88871 0.87901 0.89649 0.90650 0.95181 0.93960 0.92802 0.90182 0.88881 0.92020 0.89373 0.92327 0.92288 0.91580 0.92763 0.92193 0.91164 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 14.32 29.01 0.42 -2.05 16 2 C -0.17 -2.41 9.72 -36.03 -0.35 -2.76 16 3 C 0.14 2.29 5.64 -5.20 -0.03 2.26 16 4 N -0.60 -12.81 2.44 -176.44 -0.43 -13.24 16 5 C 0.25 6.58 5.16 -5.19 -0.03 6.55 16 6 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 10 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.50 10.54 7.39 -10.98 -0.08 10.46 16 15 O -0.54 -13.34 13.54 5.55 0.08 -13.27 16 16 C -0.13 -2.05 3.51 -27.88 -0.10 -2.15 16 17 C -0.06 -0.85 1.67 -90.62 -0.15 -1.00 16 18 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 19 C -0.12 -1.85 4.80 -26.73 -0.13 -1.98 16 20 C -0.12 -1.54 5.92 -26.73 -0.16 -1.69 16 21 C -0.11 -1.22 5.78 -26.73 -0.15 -1.37 16 22 C -0.15 -1.44 5.63 -26.76 -0.15 -1.59 16 23 C 0.11 1.19 3.21 -26.76 -0.09 1.10 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 O -0.56 -5.97 11.39 -35.23 -0.40 -6.38 16 26 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 27 H 0.09 1.07 8.06 -52.48 -0.42 0.64 16 28 H 0.10 1.41 7.81 -52.49 -0.41 1.00 16 29 H 0.09 1.50 7.72 -51.93 -0.40 1.10 16 30 H 0.08 1.09 6.45 -51.93 -0.33 0.76 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.08 1.07 7.73 -51.92 -0.40 0.67 16 35 H 0.09 1.42 7.10 -51.93 -0.37 1.06 16 36 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 37 H 0.09 1.73 5.95 -51.93 -0.31 1.42 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.72 7.68 -51.93 -0.40 0.32 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.37 2.37 9.08 45.56 0.41 2.79 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -33.13 350.64 -7.92 -41.04 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.74 Total: 3.57 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.42 Total: -7.94 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.31 Total: -39.48 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.33 Total: -19.65 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.13 -7.92 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359379923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.848 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds