Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99600 * 2 1 4 4 N 1.46501 * 109.47204 * 125.00251 * 3 2 1 5 5 C 1.46501 * 119.99567 * 276.01170 * 4 3 2 6 6 C 1.50697 * 109.47407 * 269.99633 * 5 4 3 7 7 H 1.08006 * 119.99364 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99854 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00334 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47598 * 89.99865 * 10 8 6 12 12 H 1.48507 * 109.47327 * 209.99889 * 10 8 6 13 13 H 1.48500 * 109.47250 * 329.99643 * 10 8 6 14 14 C 1.34767 * 120.00059 * 96.00785 * 4 3 2 15 15 O 1.21286 * 120.00151 * 185.29695 * 14 4 3 16 16 C 1.50701 * 120.00080 * 5.30170 * 14 4 3 17 17 H 1.08994 * 109.47119 * 329.26317 * 16 14 4 18 18 O 1.42904 * 109.46794 * 209.26370 * 16 14 4 19 19 C 1.53003 * 109.47017 * 89.26673 * 16 14 4 20 20 C 1.52993 * 109.47033 * 305.13419 * 19 16 14 21 21 C 1.53002 * 109.47369 * 180.02562 * 20 19 16 22 22 C 1.52992 * 109.47401 * 59.99769 * 21 20 19 23 23 C 1.53007 * 109.47245 * 300.00762 * 22 21 20 24 24 C 1.52996 * 109.47283 * 59.99489 * 23 22 21 25 25 H 1.07997 * 120.00412 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99947 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47209 * 4.99676 * 3 2 1 29 29 H 1.09000 * 109.46861 * 244.99939 * 3 2 1 30 30 H 1.09002 * 109.47354 * 30.00503 * 5 4 3 31 31 H 1.09007 * 109.47080 * 149.99877 * 5 4 3 32 32 H 0.96999 * 120.00304 * 179.97438 * 9 8 6 33 33 H 0.96696 * 114.00144 * 299.99893 * 18 16 14 34 34 H 1.08996 * 109.47027 * 65.13712 * 19 16 14 35 35 H 1.09004 * 109.47562 * 300.00658 * 20 19 16 36 36 H 1.09003 * 109.47238 * 60.00097 * 20 19 16 37 37 H 1.09005 * 109.46739 * 300.00090 * 21 20 19 38 38 H 1.09005 * 109.47488 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.47644 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.46886 * 59.99935 * 22 21 20 41 41 H 1.09000 * 109.46503 * 299.99407 * 23 22 21 42 42 H 1.08995 * 109.46809 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47151 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47003 * 60.00256 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5230 1.7410 2.4571 6 6 2.6881 3.2310 2.6113 7 1 3.1019 3.8149 1.8024 8 6 2.3111 3.8486 3.7848 9 7 1.8067 3.1375 4.7696 10 14 2.5151 5.6956 3.9756 11 1 1.2825 6.3806 3.5098 12 1 2.7530 6.0223 5.4046 13 1 3.6719 6.1523 3.1642 14 6 4.2824 0.9805 0.9526 15 8 5.0295 0.9098 1.9055 16 6 4.7952 0.6753 -0.4312 17 1 3.9881 0.2593 -1.0342 18 8 5.8624 -0.2712 -0.3456 19 6 5.3062 1.9627 -1.0812 20 6 4.2005 3.0199 -1.0569 21 6 4.7112 4.3071 -1.7074 22 6 5.1125 4.0220 -3.1560 23 6 6.2182 2.9647 -3.1803 24 6 5.7074 1.6775 -2.5299 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4706 1.4788 2.5659 31 1 3.1059 1.2297 3.2233 32 1 1.5417 3.5720 5.5954 33 1 6.6167 0.0327 0.1776 34 1 6.1718 2.3294 -0.5295 35 1 3.3348 2.6531 -1.6084 36 1 3.9144 3.2227 -0.0248 37 1 5.5770 4.6740 -1.1561 38 1 3.9237 5.0605 -1.6897 39 1 5.4768 4.9389 -3.6193 40 1 4.2468 3.6550 -3.7073 41 1 7.0839 3.3317 -2.6291 42 1 6.5037 2.7614 -4.2124 43 1 6.4953 0.9245 -2.5468 44 1 4.8416 1.3106 -3.0812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359399518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = -85.275355 kcal Electronic energy + Delta-G solvation = -23815.728119 eV Core-core repulsion = 20539.789003 eV Total energy + Delta-G solvation = -3275.939116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.19540 -37.91457 -36.31033 -35.40630 -33.18428 -32.24511 -31.36717 -30.64473 -28.00840 -26.26947 -25.20500 -23.08271 -22.38001 -21.41418 -20.03713 -19.76669 -18.71612 -16.93368 -16.64977 -16.31974 -15.90691 -14.99407 -14.65512 -14.38345 -14.28723 -14.08651 -13.95674 -13.55233 -13.12154 -12.94196 -12.68587 -12.35346 -12.14316 -11.97629 -11.78471 -11.56026 -11.30834 -11.10466 -11.10033 -11.00511 -10.86765 -10.80298 -10.61439 -10.32776 -10.20600 -10.00024 -9.85643 -9.64067 -9.13196 -8.69093 -8.45872 -7.70021 -6.06683 -4.11925 2.45390 3.25040 3.27209 3.34461 3.38224 3.91980 4.40677 4.51564 4.69475 4.76416 4.85227 5.01189 5.12564 5.23896 5.27722 5.31837 5.38599 5.43323 5.46687 5.54162 5.58355 5.62855 5.70116 5.74657 5.94443 6.00177 6.09101 6.16058 6.18596 6.19576 6.22020 6.35653 6.52546 6.55589 6.81586 6.91461 7.06367 7.44091 7.51651 7.72111 7.90111 8.20240 8.35368 8.84755 9.00964 9.53120 11.01429 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.006687 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.042682 B = 4185.996560 C = 4994.718239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.123 3.877 4 N -0.587 5.587 5 C 0.245 3.755 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.485 3.515 15 O -0.540 6.540 16 C 0.090 3.910 17 H 0.113 0.887 18 O -0.547 6.547 19 C -0.107 4.107 20 C -0.133 4.133 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.107 4.107 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.382 0.618 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 -1.809 -16.522 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.000 4.000 4 N -0.318 5.318 5 C 0.126 3.874 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.271 3.729 15 O -0.418 6.418 16 C 0.028 3.972 17 H 0.130 0.870 18 O -0.352 6.352 19 C -0.127 4.127 20 C -0.171 4.171 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.145 4.145 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.231 0.769 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.826 -2.176 -16.166 16.554 hybrid contribution 0.240 1.357 0.650 1.524 sum 3.066 -0.819 -15.516 15.837 Atomic orbital electron populations 1.23811 0.95814 1.01756 1.00474 1.23445 0.96464 0.99083 0.99979 1.20971 0.93305 0.95465 0.90271 1.48223 1.07689 1.64205 1.11729 1.19293 0.95221 0.95150 0.77750 1.21420 1.42128 0.92489 1.00496 0.92295 1.24925 0.95109 0.98395 0.95586 1.69939 1.42413 1.35649 1.05145 0.86540 0.78406 0.85290 0.77452 1.20639 1.21102 1.19866 1.21144 0.82981 0.77617 0.91186 1.90662 1.56025 1.52484 1.42647 1.22064 0.90699 0.90542 0.93935 0.86967 1.86496 1.29643 1.43703 1.75348 1.21728 0.99730 0.94480 0.96712 1.22005 0.97204 0.94589 1.03266 1.21492 1.01067 0.97521 0.95344 1.21558 0.98585 0.98451 0.97091 1.21528 0.98341 0.95556 1.00159 1.21511 1.01231 0.97341 0.94395 0.88295 0.88759 0.87700 0.89510 0.89650 0.94942 0.93864 0.92708 0.76931 0.90356 0.91354 0.89274 0.92098 0.91837 0.92444 0.92102 0.92123 0.92253 0.91389 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.32 29.02 0.42 -1.98 16 2 C -0.17 -2.50 9.84 -36.02 -0.35 -2.85 16 3 C 0.12 1.97 4.39 -5.19 -0.02 1.94 16 4 N -0.59 -12.06 1.70 -176.43 -0.30 -12.36 16 5 C 0.24 6.33 5.22 -5.19 -0.03 6.30 16 6 C -0.53 -14.46 9.38 -34.44 -0.32 -14.78 16 7 H 0.06 1.58 6.63 -52.48 -0.35 1.23 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 10 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.48 9.94 5.89 -10.99 -0.06 9.87 16 15 O -0.54 -13.45 15.98 -12.40 -0.20 -13.65 16 16 C 0.09 1.40 2.51 -27.88 -0.07 1.33 16 17 H 0.11 1.57 6.31 -51.93 -0.33 1.24 16 18 O -0.55 -8.47 12.74 -53.19 -0.68 -9.15 16 19 C -0.11 -1.45 1.98 -90.62 -0.18 -1.63 16 20 C -0.13 -1.87 3.66 -26.73 -0.10 -1.97 16 21 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.37 16 23 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 24 C -0.11 -1.18 5.10 -26.73 -0.14 -1.31 16 25 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 26 H 0.09 1.09 8.06 -52.48 -0.42 0.67 16 27 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 28 H 0.09 1.42 7.77 -51.93 -0.40 1.02 16 29 H 0.09 1.14 3.23 -51.93 -0.17 0.97 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.04 1.28 7.36 -51.92 -0.38 0.90 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.38 5.35 8.63 45.56 0.39 5.74 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.85 5.89 -51.93 -0.31 0.55 16 36 H 0.09 1.60 5.11 -51.93 -0.27 1.33 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -31.81 344.30 -8.11 -39.92 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.41 Total: 6.95 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.43 Total: -7.76 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.44 Total: -37.98 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.88 Total: -22.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.81 -8.11 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.357 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds