Wall clock time and date at job start Tue Mar 31 2020 05:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99600 * 2 1 4 4 N 1.46501 * 109.47204 * 125.00251 * 3 2 1 5 5 C 1.46501 * 119.99567 * 276.01170 * 4 3 2 6 6 C 1.50697 * 109.47407 * 269.99633 * 5 4 3 7 7 H 1.08006 * 119.99364 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99854 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00334 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47598 * 89.99865 * 10 8 6 12 12 H 1.48507 * 109.47327 * 209.99889 * 10 8 6 13 13 H 1.48500 * 109.47250 * 329.99643 * 10 8 6 14 14 C 1.34767 * 120.00059 * 96.00785 * 4 3 2 15 15 O 1.21286 * 120.00151 * 185.29695 * 14 4 3 16 16 C 1.50701 * 120.00080 * 5.30170 * 14 4 3 17 17 H 1.08994 * 109.47119 * 329.26317 * 16 14 4 18 18 O 1.42904 * 109.46794 * 209.26370 * 16 14 4 19 19 C 1.53003 * 109.47017 * 89.26673 * 16 14 4 20 20 C 1.52993 * 109.47033 * 305.13419 * 19 16 14 21 21 C 1.53002 * 109.47369 * 180.02562 * 20 19 16 22 22 C 1.52992 * 109.47401 * 59.99769 * 21 20 19 23 23 C 1.53007 * 109.47245 * 300.00762 * 22 21 20 24 24 C 1.52996 * 109.47283 * 59.99489 * 23 22 21 25 25 H 1.07997 * 120.00412 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99947 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47209 * 4.99676 * 3 2 1 29 29 H 1.09000 * 109.46861 * 244.99939 * 3 2 1 30 30 H 1.09002 * 109.47354 * 30.00503 * 5 4 3 31 31 H 1.09007 * 109.47080 * 149.99877 * 5 4 3 32 32 H 0.96999 * 120.00304 * 179.97438 * 9 8 6 33 33 H 0.96696 * 114.00144 * 299.99893 * 18 16 14 34 34 H 1.08996 * 109.47027 * 65.13712 * 19 16 14 35 35 H 1.09004 * 109.47562 * 300.00658 * 20 19 16 36 36 H 1.09003 * 109.47238 * 60.00097 * 20 19 16 37 37 H 1.09005 * 109.46739 * 300.00090 * 21 20 19 38 38 H 1.09005 * 109.47488 * 180.02562 * 21 20 19 39 39 H 1.08995 * 109.47644 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.46886 * 59.99935 * 22 21 20 41 41 H 1.09000 * 109.46503 * 299.99407 * 23 22 21 42 42 H 1.08995 * 109.46809 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47151 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47003 * 60.00256 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 2.5230 1.7410 2.4571 6 6 2.6881 3.2310 2.6113 7 1 3.1019 3.8149 1.8024 8 6 2.3111 3.8486 3.7848 9 7 1.8067 3.1375 4.7696 10 14 2.5151 5.6956 3.9756 11 1 1.2825 6.3806 3.5098 12 1 2.7530 6.0223 5.4046 13 1 3.6719 6.1523 3.1642 14 6 4.2824 0.9805 0.9526 15 8 5.0295 0.9098 1.9055 16 6 4.7952 0.6753 -0.4312 17 1 3.9881 0.2593 -1.0342 18 8 5.8624 -0.2712 -0.3456 19 6 5.3062 1.9627 -1.0812 20 6 4.2005 3.0199 -1.0569 21 6 4.7112 4.3071 -1.7074 22 6 5.1125 4.0220 -3.1560 23 6 6.2182 2.9647 -3.1803 24 6 5.7074 1.6775 -2.5299 25 1 -0.5401 0.9352 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3584 2.1317 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4706 1.4788 2.5659 31 1 3.1059 1.2297 3.2233 32 1 1.5417 3.5720 5.5954 33 1 6.6167 0.0327 0.1776 34 1 6.1718 2.3294 -0.5295 35 1 3.3348 2.6531 -1.6084 36 1 3.9144 3.2227 -0.0248 37 1 5.5770 4.6740 -1.1561 38 1 3.9237 5.0605 -1.6897 39 1 5.4768 4.9389 -3.6193 40 1 4.2468 3.6550 -3.7073 41 1 7.0839 3.3317 -2.6291 42 1 6.5037 2.7614 -4.2124 43 1 6.4953 0.9245 -2.5468 44 1 4.8416 1.3106 -3.0812 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359399518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:09 Heat of formation + Delta-G solvation = -104.825167 kcal Electronic energy + Delta-G solvation = -23816.575862 eV Core-core repulsion = 20539.789003 eV Total energy + Delta-G solvation = -3276.786859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.61861 -39.15656 -37.70950 -36.83219 -35.10734 -33.75660 -32.57377 -31.59428 -29.83933 -27.59726 -26.77646 -24.76055 -23.46034 -22.61185 -21.21948 -20.81089 -20.18096 -18.66379 -18.38318 -17.86380 -17.23601 -16.58066 -16.00232 -15.87182 -15.58506 -15.37613 -14.96208 -14.73873 -14.56671 -14.31705 -14.21558 -13.82539 -13.33868 -13.22734 -13.05976 -13.01081 -12.94782 -12.87889 -12.59806 -12.27585 -12.23712 -12.17788 -11.90924 -11.77738 -11.66554 -11.28918 -11.09211 -10.87923 -10.65053 -10.30945 -10.25419 -9.47041 -8.22912 -6.37226 1.28759 1.34826 1.37602 1.47393 1.67613 2.30308 2.43752 3.07181 3.28342 3.53446 3.64207 3.74402 3.95306 4.06406 4.13291 4.22393 4.31287 4.32614 4.42271 4.48653 4.60304 4.63933 4.67973 4.81583 4.84241 4.98350 5.03974 5.04523 5.17784 5.24294 5.25327 5.27283 5.31458 5.43484 5.45540 5.55917 5.59648 5.70038 5.75255 5.92590 6.05146 6.47256 6.67781 6.74834 7.24228 7.39163 8.84738 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.006687 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.042682 B = 4185.996560 C = 4994.718239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.192 4.192 3 C 0.123 3.877 4 N -0.587 5.587 5 C 0.262 3.738 6 C -0.536 4.536 7 H 0.061 0.939 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.271 1.271 14 C 0.475 3.525 15 O -0.597 6.597 16 C 0.106 3.894 17 H 0.137 0.863 18 O -0.548 6.548 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.100 4.100 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.020 0.980 31 H -0.007 1.007 32 H 0.266 0.734 33 H 0.387 0.613 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -1.152 -19.638 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.211 4.211 3 C 0.001 3.999 4 N -0.317 5.317 5 C 0.141 3.859 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.788 3.212 11 H -0.188 1.188 12 H -0.209 1.209 13 H -0.195 1.195 14 C 0.264 3.736 15 O -0.478 6.478 16 C 0.043 3.957 17 H 0.154 0.846 18 O -0.354 6.354 19 C -0.120 4.120 20 C -0.168 4.168 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.138 4.138 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.038 0.962 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.473 -1.525 -19.334 19.551 hybrid contribution 0.307 1.105 1.649 2.009 sum 2.780 -0.420 -17.685 17.907 Atomic orbital electron populations 1.24056 0.95408 1.02981 0.97790 1.23366 0.97005 0.98348 1.02372 1.21195 0.92869 0.96302 0.89519 1.48163 1.08787 1.63682 1.11083 1.18709 0.93429 0.94151 0.79617 1.21699 1.41782 0.93276 1.00738 0.92105 1.25842 0.94675 1.03378 0.95208 1.70069 1.43399 1.37734 1.05720 0.85467 0.78962 0.79390 0.77347 1.18801 1.20926 1.19521 1.22205 0.82302 0.76238 0.92888 1.90622 1.57323 1.54927 1.44961 1.22094 0.91248 0.91801 0.90523 0.84608 1.86476 1.29748 1.43938 1.75227 1.21694 0.98816 0.93033 0.98428 1.21937 0.98103 0.95784 1.01010 1.21494 1.00480 0.96525 0.96962 1.21534 0.99205 0.99251 0.95126 1.21533 0.97944 0.94718 1.01193 1.21487 1.02039 0.98172 0.92061 0.88005 0.86599 0.87311 0.90107 0.86724 0.96225 0.98894 0.92515 0.76284 0.92143 0.89460 0.93673 0.93514 0.91831 0.91206 0.90764 0.92801 0.90029 0.91052 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 14.32 67.79 0.97 -3.08 16 2 C -0.19 -5.37 9.84 25.65 0.25 -5.12 16 3 C 0.12 3.83 4.39 85.63 0.38 4.21 16 4 N -0.59 -24.87 1.70 -830.48 -1.41 -26.29 16 5 C 0.26 14.27 5.22 85.63 0.45 14.72 16 6 C -0.54 -30.48 9.38 25.60 0.24 -30.24 16 7 H 0.06 3.36 6.63 -2.91 -0.02 3.34 16 8 C 0.01 0.45 5.46 84.65 0.46 0.91 16 9 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 10 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.47 20.08 5.89 87.66 0.52 20.60 16 15 O -0.60 -31.39 15.98 14.12 0.23 -31.16 16 16 C 0.11 3.18 2.51 29.85 0.07 3.25 16 17 H 0.14 3.44 6.31 -2.39 -0.02 3.43 16 18 O -0.55 -16.49 12.74 -131.81 -1.68 -18.17 16 19 C -0.10 -2.60 1.98 -10.79 -0.02 -2.62 16 20 C -0.13 -3.53 3.66 30.59 0.11 -3.42 16 21 C -0.12 -2.74 5.92 30.59 0.18 -2.56 16 22 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 23 C -0.12 -1.92 5.92 30.60 0.18 -1.74 16 24 C -0.10 -1.88 5.10 30.59 0.16 -1.72 16 25 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 26 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 27 H 0.11 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.08 2.62 7.77 -2.39 -0.02 2.60 16 29 H 0.12 2.82 3.23 -2.39 -0.01 2.82 16 30 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 31 H -0.01 -0.45 7.36 -2.38 -0.02 -0.47 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.39 10.88 8.63 -74.06 -0.64 10.24 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.96 5.89 -2.38 -0.01 1.95 16 36 H 0.04 1.64 5.11 -2.39 -0.01 1.62 16 37 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.33 7.83 -2.39 -0.02 1.32 16 44 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -72.42 344.30 3.92 -68.50 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.34 Total: 25.23 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 4.13 Total: -8.55 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.13 Total: -82.55 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.45 Total: -49.33 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.42 3.92 -68.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.321 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds