Wall clock time and date at job start Tue Mar 31 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00464 * 2 1 4 4 N 1.46491 * 109.47289 * 125.89276 * 3 2 1 5 5 C 1.46500 * 120.00149 * 265.16501 * 4 3 2 6 6 C 1.50701 * 109.47099 * 276.13536 * 5 4 3 7 7 H 1.08008 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00475 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99493 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00214 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47189 * 60.00018 * 10 8 6 12 12 H 1.48502 * 109.46959 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.46943 * 299.99717 * 10 8 6 14 14 C 1.34777 * 120.00194 * 85.16270 * 4 3 2 15 15 O 1.21284 * 120.00021 * 5.15975 * 14 4 3 16 16 C 1.50704 * 120.00316 * 185.15987 * 14 4 3 17 17 H 1.09000 * 109.47138 * 44.16798 * 16 14 4 18 18 O 1.42896 * 109.47439 * 164.16998 * 16 14 4 19 19 C 1.53005 * 109.46884 * 284.16988 * 16 14 4 20 20 C 1.52995 * 109.47213 * 300.05320 * 19 16 14 21 21 C 1.52992 * 109.47557 * 180.02562 * 20 19 16 22 22 C 1.53005 * 109.47132 * 59.99703 * 21 20 19 23 23 C 1.52995 * 109.47142 * 300.00551 * 22 21 20 24 24 C 1.52995 * 109.46818 * 180.02562 * 19 16 14 25 25 H 1.07993 * 120.00348 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99290 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99475 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.46959 * 5.88855 * 3 2 1 29 29 H 1.09003 * 109.47271 * 245.89492 * 3 2 1 30 30 H 1.08993 * 109.47222 * 36.13150 * 5 4 3 31 31 H 1.08996 * 109.47469 * 156.14049 * 5 4 3 32 32 H 0.96999 * 119.99597 * 179.97438 * 9 8 6 33 33 H 0.96701 * 114.00053 * 59.99772 * 18 16 14 34 34 H 1.08993 * 109.47165 * 60.05676 * 19 16 14 35 35 H 1.09008 * 109.47321 * 300.00789 * 20 19 16 36 36 H 1.09003 * 109.47127 * 60.00296 * 20 19 16 37 37 H 1.09007 * 109.46704 * 300.00497 * 21 20 19 38 38 H 1.08996 * 109.47617 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.46930 * 180.02562 * 22 21 20 40 40 H 1.08993 * 109.46788 * 60.00631 * 22 21 20 41 41 H 1.09002 * 109.47099 * 299.99875 * 23 22 21 42 42 H 1.09003 * 109.47127 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.47382 * 299.99921 * 24 19 16 44 44 H 1.09002 * 109.47385 * 59.99957 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0090 1.3230 1.1189 5 6 2.6272 1.9419 2.3906 6 6 2.8692 3.4276 2.3189 7 1 3.2680 3.8669 1.4164 8 6 2.5816 4.2263 3.4054 9 7 2.0955 3.6915 4.5043 10 14 2.8822 6.0678 3.3167 11 1 2.0695 6.6497 2.2186 12 1 2.4939 6.6953 4.6054 13 1 4.3217 6.3222 3.0556 14 6 4.2301 0.7701 0.9783 15 8 4.5812 0.3416 -0.1006 16 6 5.1592 0.6844 2.1618 17 1 4.6032 0.3472 3.0366 18 8 6.2083 -0.2433 1.8775 19 6 5.7597 2.0640 2.4396 20 6 6.5390 2.5378 1.2113 21 6 7.1401 3.9170 1.4893 22 6 8.0846 3.8292 2.6898 23 6 7.3053 3.3553 3.9182 24 6 6.7035 1.9768 3.6407 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5399 0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3600 2.1309 0.1054 29 1 2.6088 1.4098 -0.9381 30 1 1.5708 1.7548 2.5831 31 1 3.2245 1.5151 3.1963 32 1 1.8935 4.2533 5.2687 33 1 6.7458 -0.0060 1.1094 34 1 4.9596 2.7713 2.6575 35 1 7.3392 1.8303 0.9934 36 1 5.8663 2.6000 0.3559 37 1 6.3401 4.6246 1.7074 38 1 7.6949 4.2548 0.6140 39 1 8.5124 4.8119 2.8881 40 1 8.8844 3.1216 2.4718 41 1 6.5053 4.0629 4.1362 42 1 7.9782 3.2923 4.7734 43 1 6.1479 1.6394 4.5157 44 1 7.5037 1.2692 3.4234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359399520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:12 Heat of formation + Delta-G solvation = -95.386738 kcal Electronic energy + Delta-G solvation = -24132.536872 eV Core-core repulsion = 20856.159294 eV Total energy + Delta-G solvation = -3276.377578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98228 -37.86426 -35.97829 -35.08903 -33.57513 -32.26235 -30.84347 -30.34089 -27.64131 -27.01221 -24.67692 -23.01180 -22.24586 -21.30682 -19.80441 -19.17066 -18.60607 -16.86446 -16.53031 -16.20566 -15.59249 -14.81416 -14.67817 -14.55490 -14.41125 -13.84696 -13.73667 -13.36848 -12.97951 -12.69229 -12.40584 -12.26225 -11.86413 -11.73583 -11.67408 -11.52814 -11.25538 -11.07076 -10.93633 -10.82553 -10.78308 -10.64596 -10.39637 -10.29962 -9.89084 -9.81762 -9.75847 -9.51538 -9.13763 -8.74528 -8.54435 -7.80748 -6.26399 -4.33069 2.54824 3.17918 3.23544 3.24246 3.31230 3.95865 4.26328 4.82988 5.05047 5.06894 5.10033 5.12994 5.26047 5.41711 5.54606 5.55313 5.68976 5.74317 5.85991 5.92721 5.95284 5.97551 6.06822 6.12212 6.17468 6.28174 6.32898 6.37749 6.55263 6.56893 6.63720 6.69044 6.70091 6.79271 6.91520 7.00812 7.10710 7.18148 7.46693 7.67873 7.94985 7.96193 8.27466 8.69827 8.91599 9.33215 10.79754 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.009205 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.338246 B = 3041.160076 C = 4681.594530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.143 3.857 4 N -0.588 5.588 5 C 0.234 3.766 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.070 3.930 9 N -0.885 5.885 10 Si 0.890 3.110 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.492 3.508 15 O -0.571 6.571 16 C 0.101 3.899 17 H 0.119 0.881 18 O -0.548 6.548 19 C -0.132 4.132 20 C -0.110 4.110 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.102 4.102 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.374 0.626 34 H 0.136 0.864 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -1.579 -2.826 6.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.318 5.318 5 C 0.114 3.886 6 C -0.575 4.575 7 H 0.081 0.919 8 C -0.134 4.134 9 N -0.522 5.522 10 Si 0.717 3.283 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.197 1.197 14 C 0.280 3.720 15 O -0.452 6.452 16 C 0.039 3.961 17 H 0.136 0.864 18 O -0.354 6.354 19 C -0.150 4.150 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.139 4.139 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.223 0.777 34 H 0.153 0.847 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.155 -2.042 -2.643 6.142 hybrid contribution 0.120 1.348 -0.343 1.396 sum 5.275 -0.694 -2.985 6.101 Atomic orbital electron populations 1.23760 0.95751 1.01540 1.02033 1.23392 0.96082 0.99355 0.98587 1.20399 0.91974 0.94769 0.90838 1.48240 1.12820 1.55306 1.15474 1.19537 0.97145 0.92803 0.79086 1.21356 1.44204 0.91878 1.00067 0.91921 1.24904 0.94589 0.98739 0.95143 1.69907 1.42613 1.36099 1.03604 0.86676 0.79127 0.85033 0.77481 1.20116 1.21112 1.19731 1.21393 0.82867 0.77236 0.90516 1.90587 1.76019 1.50486 1.28134 1.21881 0.87538 0.90961 0.95671 0.86397 1.86505 1.45580 1.50882 1.52389 1.22157 1.00660 0.96963 0.95246 1.21483 0.98981 0.96439 0.97891 1.21479 0.98960 0.97653 0.97302 1.21504 0.97905 1.00290 0.95597 1.21511 0.99494 0.97729 0.96921 1.21389 0.98431 0.96483 0.97617 0.88919 0.88433 0.87892 0.89613 0.90429 0.94674 0.94102 0.92329 0.77692 0.84658 0.92938 0.91987 0.91473 0.92759 0.92750 0.92518 0.91554 0.92667 0.92025 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.80 14.32 29.01 0.42 -2.39 16 2 C -0.15 -2.59 9.81 -36.03 -0.35 -2.94 16 3 C 0.14 2.65 5.86 -5.20 -0.03 2.62 16 4 N -0.59 -12.03 2.45 -176.44 -0.43 -12.46 16 5 C 0.23 5.27 4.66 -5.19 -0.02 5.24 16 6 C -0.54 -12.88 7.00 -34.44 -0.24 -13.12 16 7 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.88 -23.02 13.29 55.43 0.74 -22.29 16 10 Si 0.89 19.53 29.54 -169.99 -5.02 14.50 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 C 0.49 10.06 5.71 -10.98 -0.06 9.99 16 15 O -0.57 -12.59 15.84 -13.84 -0.22 -12.81 16 16 C 0.10 1.89 2.35 -27.88 -0.07 1.82 16 17 H 0.12 2.25 6.75 -51.93 -0.35 1.90 16 18 O -0.55 -9.72 12.37 -54.62 -0.68 -10.39 16 19 C -0.13 -2.34 1.85 -90.62 -0.17 -2.51 16 20 C -0.11 -1.82 4.65 -26.74 -0.12 -1.95 16 21 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 22 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 23 C -0.12 -1.78 5.92 -26.76 -0.16 -1.94 16 24 C -0.10 -1.63 5.06 -26.76 -0.14 -1.76 16 25 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 26 H 0.10 1.36 7.84 -52.49 -0.41 0.95 16 27 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.56 7.69 -51.93 -0.40 1.16 16 29 H 0.08 1.45 7.50 -51.93 -0.39 1.06 16 30 H 0.04 0.85 8.12 -51.93 -0.42 0.43 16 31 H 0.04 0.95 5.56 -51.93 -0.29 0.66 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.37 5.97 6.97 45.56 0.32 6.29 16 34 H 0.14 2.82 4.56 -51.93 -0.24 2.58 16 35 H 0.05 0.79 6.78 -51.92 -0.35 0.44 16 36 H 0.06 1.14 7.14 -51.93 -0.37 0.77 16 37 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -26.32 345.12 -8.43 -34.75 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -6.65 Total: 12.46 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.36 Total: -8.97 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.30 Total: -34.75 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.89 Total: -23.21 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.32 -8.43 -34.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.637 kcal (2) G-P(sol) polarization free energy of solvation -26.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds