Wall clock time and date at job start Tue Mar 31 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99958 * 2 1 4 4 N 1.46497 * 109.47443 * 234.72353 * 3 2 1 5 5 C 1.46499 * 120.00459 * 264.89108 * 4 3 2 6 6 C 1.50704 * 109.47176 * 90.21129 * 5 4 3 7 7 H 1.08003 * 119.99987 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99792 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00250 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99818 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47135 * 59.99816 * 10 8 6 12 12 H 1.48491 * 109.47010 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46941 * 300.00256 * 10 8 6 14 14 C 1.34780 * 119.99940 * 84.88368 * 4 3 2 15 15 O 1.21282 * 119.99774 * 4.81686 * 14 4 3 16 16 C 1.50698 * 120.00087 * 184.81266 * 14 4 3 17 17 H 1.08997 * 109.54638 * 323.49653 * 16 14 4 18 18 C 1.53180 * 109.54471 * 203.31693 * 16 14 4 19 19 C 1.53098 * 109.16222 * 297.12069 * 18 16 14 20 20 H 1.08995 * 109.48449 * 62.38430 * 19 18 16 21 21 C 1.53001 * 109.47828 * 182.41120 * 19 18 16 22 22 O 1.42911 * 109.41129 * 302.38449 * 19 18 16 23 23 C 1.42902 * 114.09201 * 61.16308 * 22 19 18 24 24 H 1.08999 * 109.48114 * 58.83358 * 23 22 19 25 25 C 1.53009 * 109.47660 * 178.85663 * 23 22 19 26 26 C 1.53093 * 109.41771 * 298.83688 * 23 22 19 27 27 H 1.08001 * 119.99951 * 0.27176 * 1 2 3 28 28 H 1.07997 * 119.99992 * 180.27831 * 1 2 3 29 29 H 1.07995 * 119.99516 * 179.72198 * 2 1 3 30 30 H 1.09001 * 109.47528 * 354.73092 * 3 2 1 31 31 H 1.09005 * 109.47111 * 114.72285 * 3 2 1 32 32 H 1.08995 * 109.47204 * 210.21196 * 5 4 3 33 33 H 1.09001 * 109.46526 * 330.21600 * 5 4 3 34 34 H 0.96996 * 120.00040 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.52171 * 57.02041 * 18 16 14 36 36 H 1.08997 * 109.52404 * 177.21169 * 18 16 14 37 37 H 1.08997 * 109.47382 * 59.99301 * 21 19 18 38 38 H 1.08998 * 109.47160 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.46809 * 299.99389 * 21 19 18 40 40 H 1.08997 * 109.47106 * 59.99879 * 25 23 22 41 41 H 1.08999 * 109.47207 * 179.97438 * 25 23 22 42 42 H 1.09002 * 109.47007 * 300.00243 * 25 23 22 43 43 H 1.09004 * 109.52059 * 297.70782 * 26 23 22 44 44 H 1.09001 * 109.51815 * 177.52084 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9985 1.3292 -1.1275 5 6 4.3938 0.9286 -0.9309 6 6 4.5316 -0.5512 -1.1806 7 1 3.6664 -1.1348 -1.4585 8 6 5.7623 -1.1600 -1.0544 9 7 6.8158 -0.4494 -0.7155 10 14 5.9332 -2.9941 -1.3646 11 1 5.5225 -3.3008 -2.7584 12 1 7.3473 -3.4003 -1.1639 13 1 5.0654 -3.7393 -0.4175 14 6 2.5749 1.7198 -2.3460 15 8 1.4443 2.1342 -2.4908 16 6 3.5061 1.6419 -3.5282 17 1 4.5191 1.8901 -3.2115 18 6 3.0497 2.6298 -4.6061 19 6 1.6570 2.2279 -5.0990 20 1 0.9478 2.2883 -4.2735 21 6 1.2190 3.1745 -6.2183 22 8 1.6973 0.8886 -5.5961 23 6 2.0720 -0.0850 -4.6195 24 1 1.3682 -0.0552 -3.7878 25 6 2.0536 -1.4773 -5.2540 26 6 3.4813 0.2240 -4.1074 27 1 -0.5400 0.9353 -0.0044 28 1 -0.5400 -0.9353 0.0045 29 1 1.8499 -0.9353 0.0045 30 1 1.3590 2.1314 -0.0944 31 1 2.6174 1.4048 0.9335 32 1 5.0303 1.4753 -1.6266 33 1 4.6958 1.1541 0.0919 34 1 7.6814 -0.8777 -0.6263 35 1 3.0113 3.6350 -4.1862 36 1 3.7512 2.6090 -5.4400 37 1 1.9281 3.1137 -7.0439 38 1 0.2274 2.8885 -6.5688 39 1 1.1894 4.1961 -5.8393 40 1 2.7578 -1.5070 -6.0854 41 1 2.3399 -2.2198 -4.5091 42 1 1.0504 -1.6967 -5.6195 43 1 4.1916 0.1545 -4.9312 44 1 3.7516 -0.4916 -3.3308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359436235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:30 Heat of formation + Delta-G solvation = -73.222413 kcal Electronic energy + Delta-G solvation = -24260.903334 eV Core-core repulsion = 20985.486873 eV Total energy + Delta-G solvation = -3275.416461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.23464 -37.97052 -35.46348 -33.81239 -33.19234 -32.75596 -32.10772 -29.34183 -27.54671 -26.06783 -25.82895 -23.22423 -22.54986 -21.34124 -20.66572 -19.40499 -17.97477 -16.66669 -16.36234 -16.05185 -15.50439 -15.13914 -14.65401 -14.45917 -14.16948 -13.82940 -13.39141 -13.33069 -12.81789 -12.46966 -12.36425 -12.23899 -11.97697 -11.83678 -11.67001 -11.60363 -11.48857 -11.39467 -11.24667 -10.97641 -10.84693 -10.75330 -10.43456 -10.22154 -10.09238 -9.91305 -9.68070 -9.18150 -8.93302 -8.65047 -8.31766 -7.79539 -6.24752 -4.30947 2.66970 3.18764 3.24853 3.26052 3.37444 4.00279 4.17373 4.27572 5.07349 5.15057 5.19464 5.31144 5.38793 5.44550 5.49499 5.67206 5.69170 5.70693 5.85112 5.89834 5.93488 6.01991 6.06149 6.11127 6.13142 6.15579 6.30525 6.34315 6.37701 6.45653 6.52076 6.58611 6.67592 6.80104 6.90811 7.07171 7.13311 7.21575 7.49488 7.69352 7.83311 7.98816 8.29507 8.72109 8.98839 9.35416 10.81946 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.007416 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.614019 B = 3774.602425 C = 4441.128701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.146 3.854 4 N -0.592 5.592 5 C 0.235 3.765 6 C -0.533 4.533 7 H 0.064 0.936 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.524 3.476 15 O -0.568 6.568 16 C -0.103 4.103 17 H 0.100 0.900 18 C -0.128 4.128 19 C 0.067 3.933 20 H 0.103 0.897 21 C -0.140 4.140 22 O -0.387 6.387 23 C 0.089 3.911 24 H 0.057 0.943 25 C -0.141 4.141 26 C -0.144 4.144 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 2.854 -4.408 8.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C 0.023 3.977 4 N -0.321 5.321 5 C 0.115 3.885 6 C -0.572 4.572 7 H 0.082 0.918 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.313 3.687 15 O -0.450 6.450 16 C -0.124 4.124 17 H 0.118 0.882 18 C -0.166 4.166 19 C 0.010 3.990 20 H 0.120 0.880 21 C -0.198 4.198 22 O -0.307 6.307 23 C 0.031 3.969 24 H 0.075 0.925 25 C -0.198 4.198 26 C -0.182 4.182 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.194 3.020 -4.603 9.059 hybrid contribution 0.587 -1.105 0.224 1.272 sum -6.608 1.914 -4.379 8.154 Atomic orbital electron populations 1.23695 0.95929 1.01054 1.02801 1.23449 0.95829 0.99776 0.97724 1.20390 0.92341 0.95011 0.89934 1.48265 1.12724 1.63562 1.07555 1.19523 0.75158 0.95664 0.98130 1.21387 0.94458 0.93294 1.48034 0.91832 1.24919 0.95662 0.98243 0.94766 1.69898 0.99919 1.36122 1.46747 0.86674 0.77294 0.85174 0.79134 1.19834 1.21128 1.20124 1.20498 0.87662 0.76285 0.84286 1.90440 1.21209 1.48974 1.84403 1.21276 1.00392 0.97424 0.93311 0.88200 1.22035 0.98083 0.98627 0.97845 1.22602 0.97149 0.81876 0.97405 0.87953 1.21744 1.01361 0.98225 0.98422 1.87770 1.89652 1.15840 1.37443 1.22033 0.95367 0.88433 0.91048 0.92534 1.21733 1.01979 0.94814 1.01307 1.22342 0.97035 0.96460 1.02370 0.89006 0.89169 0.86733 0.90987 0.90132 0.94255 0.94637 0.92402 0.91479 0.91367 0.92710 0.92506 0.91682 0.92181 0.91182 0.92506 0.91201 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.07 14.32 29.01 0.42 -2.65 16 2 C -0.15 -2.61 9.80 -36.03 -0.35 -2.96 16 3 C 0.15 2.64 5.88 -5.20 -0.03 2.61 16 4 N -0.59 -11.93 2.45 -176.44 -0.43 -12.36 16 5 C 0.23 5.27 4.97 -5.19 -0.03 5.24 16 6 C -0.53 -12.78 7.24 -34.44 -0.25 -13.03 16 7 H 0.06 1.54 6.94 -52.48 -0.36 1.17 16 8 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -23.46 13.29 55.43 0.74 -22.73 16 10 Si 0.89 19.63 29.54 -169.99 -5.02 14.61 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.52 10.51 5.81 -10.98 -0.06 10.45 16 15 O -0.57 -12.00 12.56 5.56 0.07 -11.93 16 16 C -0.10 -1.92 2.38 -91.59 -0.22 -2.14 16 17 H 0.10 1.92 6.07 -51.93 -0.31 1.60 16 18 C -0.13 -2.12 4.74 -26.59 -0.13 -2.24 16 19 C 0.07 1.13 2.96 -26.68 -0.08 1.05 16 20 H 0.10 1.97 5.16 -51.93 -0.27 1.71 16 21 C -0.14 -1.93 9.56 37.16 0.36 -1.57 16 22 O -0.39 -7.04 10.05 -35.23 -0.35 -7.40 16 23 C 0.09 1.60 3.01 -26.68 -0.08 1.52 16 24 H 0.06 1.13 7.06 -51.93 -0.37 0.77 16 25 C -0.14 -2.19 9.57 37.16 0.36 -1.84 16 26 C -0.14 -2.70 4.88 -26.59 -0.13 -2.83 16 27 H 0.09 1.38 7.84 -52.49 -0.41 0.97 16 28 H 0.09 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.11 2.15 7.83 -52.49 -0.41 1.74 16 30 H 0.07 1.27 7.17 -51.93 -0.37 0.90 16 31 H 0.08 1.36 7.83 -51.93 -0.41 0.96 16 32 H 0.04 0.92 5.96 -51.93 -0.31 0.61 16 33 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.11 2.35 4.97 -51.93 -0.26 2.09 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -26.40 344.14 -7.40 -33.80 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -7.25 Total: 7.62 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -0.33 Total: -6.80 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.30 Total: -35.09 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.28 Total: -19.33 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.40 -7.40 -33.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359436235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.424 kcal (2) G-P(sol) polarization free energy of solvation -26.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds