Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99810 * 2 1 4 4 N 1.46498 * 109.47273 * 125.00282 * 3 2 1 5 5 C 1.46499 * 119.99965 * 263.75185 * 4 3 2 6 6 C 1.50694 * 109.47497 * 269.99770 * 5 4 3 7 7 H 1.08001 * 119.99650 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00611 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00322 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99505 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47269 * 90.00016 * 10 8 6 12 12 H 1.48497 * 109.47130 * 209.99842 * 10 8 6 13 13 H 1.48498 * 109.47484 * 330.00060 * 10 8 6 14 14 C 1.34776 * 119.99903 * 83.75126 * 4 3 2 15 15 O 1.21279 * 120.00061 * 184.80162 * 14 4 3 16 16 C 1.50700 * 119.99996 * 4.79183 * 14 4 3 17 17 C 1.53187 * 109.61166 * 75.86658 * 16 14 4 18 18 C 1.53089 * 109.16292 * 176.89040 * 17 16 14 19 19 H 1.08994 * 109.48266 * 182.41043 * 18 17 16 20 20 C 1.53002 * 109.48041 * 62.36949 * 18 17 16 21 21 O 1.42904 * 109.41412 * 302.39213 * 18 17 16 22 22 C 1.42903 * 114.09899 * 61.15953 * 21 18 17 23 23 H 1.09000 * 109.48555 * 58.82201 * 22 21 18 24 24 C 1.53008 * 109.48044 * 178.86317 * 22 21 18 25 25 C 1.53098 * 109.41308 * 298.83729 * 22 21 18 26 26 H 1.08001 * 120.00027 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00059 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.00495 * 180.02562 * 2 1 3 29 29 H 1.09009 * 109.46956 * 5.00424 * 3 2 1 30 30 H 1.09003 * 109.47478 * 245.00659 * 3 2 1 31 31 H 1.08995 * 109.47229 * 29.99936 * 5 4 3 32 32 H 1.09008 * 109.47155 * 149.99612 * 5 4 3 33 33 H 0.96996 * 119.99805 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.54650 * 315.64598 * 16 14 4 35 35 H 1.08996 * 109.52194 * 296.79207 * 17 16 14 36 36 H 1.08997 * 109.51983 * 56.98138 * 17 16 14 37 37 H 1.08996 * 109.47635 * 300.06010 * 20 18 17 38 38 H 1.09002 * 109.46677 * 60.06214 * 20 18 17 39 39 H 1.09009 * 109.47156 * 180.02562 * 20 18 17 40 40 H 1.08993 * 109.46758 * 179.97438 * 24 22 21 41 41 H 1.09002 * 109.46250 * 299.93828 * 24 22 21 42 42 H 1.08991 * 109.47066 * 59.93447 * 24 22 21 43 43 H 1.08990 * 109.52208 * 297.70779 * 25 22 21 44 44 H 1.08993 * 109.57302 * 177.54257 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.6065 1.9879 2.3828 6 6 3.0152 3.4376 2.3376 7 1 3.5133 3.8312 1.4639 8 6 2.7534 4.2616 3.4116 9 7 3.1097 5.5269 3.3720 10 14 1.8912 3.5809 4.9225 11 1 2.9030 3.0676 5.8807 12 1 1.0998 4.6587 5.5685 13 1 0.9854 2.4753 4.5196 14 6 4.2059 0.7533 1.0209 15 8 4.9418 0.6987 1.9834 16 6 4.6468 0.1738 -0.2985 17 6 5.0474 1.3062 -1.2492 18 6 5.5665 0.7040 -2.5575 19 1 5.8930 1.5042 -3.2216 20 6 4.4482 -0.0941 -3.2309 21 8 6.6680 -0.1622 -2.2775 22 6 6.3415 -1.2665 -1.4313 23 1 5.5549 -1.8608 -1.8963 24 6 7.5836 -2.1357 -1.2246 25 6 5.8536 -0.7434 -0.0777 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3584 2.1317 0.0897 30 1 2.6212 1.4028 -0.9314 31 1 1.5262 1.9188 2.5100 32 1 3.1030 1.4962 3.2195 33 1 2.9258 6.1065 4.1277 34 1 3.8292 -0.3983 -0.7370 35 1 4.1796 1.9325 -1.4557 36 1 5.8310 1.9081 -0.7890 37 1 4.1216 -0.8939 -2.5664 38 1 3.6081 0.5668 -3.4444 39 1 4.8182 -0.5232 -4.1622 40 1 7.3345 -2.9776 -0.5788 41 1 7.9309 -2.5080 -2.1884 42 1 8.3700 -1.5410 -0.7601 43 1 6.6535 -0.1830 0.4060 44 1 5.5626 -1.5822 0.5546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359436867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -69.336376 kcal Electronic energy + Delta-G solvation = -23565.114542 eV Core-core repulsion = 20289.866592 eV Total energy + Delta-G solvation = -3275.247950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43191 -38.61798 -35.82683 -33.75593 -33.37124 -33.04613 -32.09531 -29.67357 -28.24970 -26.66384 -25.66816 -24.22576 -22.47659 -21.82270 -20.15632 -19.23052 -18.44985 -16.91941 -16.66901 -16.26587 -16.22559 -15.38651 -14.76248 -14.71506 -14.54771 -14.15705 -13.88392 -13.34770 -13.09277 -12.92438 -12.71027 -12.59635 -12.32949 -12.16803 -12.00306 -11.84036 -11.67027 -11.52977 -11.24015 -11.11850 -10.99758 -10.96877 -10.61239 -10.52230 -10.17225 -10.11579 -9.62053 -9.51958 -9.30978 -8.85428 -8.59936 -7.75223 -6.10120 -4.08972 2.30581 3.28447 3.28854 3.34576 3.36720 3.72856 3.86513 4.38723 4.70542 4.74890 4.78429 4.90872 5.03158 5.08894 5.18712 5.22775 5.24566 5.30512 5.32937 5.35849 5.44247 5.55902 5.59540 5.71010 5.78060 5.87355 5.87924 5.94741 6.01355 6.05662 6.08958 6.20685 6.28749 6.45337 6.66065 6.69608 6.79857 6.95214 7.27742 7.34622 7.59959 8.22943 8.45564 8.90893 8.97248 9.50453 11.03141 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019032 B = 0.005252 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.867564 B = 5330.053107 C = 5835.527214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.132 3.868 4 N -0.588 5.588 5 C 0.216 3.784 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.515 3.485 15 O -0.539 6.539 16 C -0.109 4.109 17 C -0.141 4.141 18 C 0.091 3.909 19 H 0.104 0.896 20 C -0.187 4.187 21 O -0.375 6.375 22 C 0.084 3.916 23 H 0.058 0.942 24 C -0.144 4.144 25 C -0.130 4.130 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -14.245 -13.381 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C 0.008 3.992 4 N -0.319 5.319 5 C 0.095 3.905 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.302 3.698 15 O -0.416 6.416 16 C -0.131 4.131 17 C -0.179 4.179 18 C 0.033 3.967 19 H 0.122 0.878 20 C -0.245 4.245 21 O -0.294 6.294 22 C 0.027 3.973 23 H 0.076 0.924 24 C -0.201 4.201 25 C -0.168 4.168 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.311 -14.046 -12.799 19.005 hybrid contribution -0.915 -0.153 0.999 1.364 sum -0.604 -14.199 -11.799 18.472 Atomic orbital electron populations 1.23840 0.95809 1.01848 1.00530 1.23474 0.96437 0.99064 0.99969 1.20709 0.93061 0.95268 0.90124 1.47867 1.14150 1.54670 1.15187 1.19665 0.95310 0.93471 0.82037 1.21326 1.39296 0.92050 1.04086 0.90740 1.24842 0.95271 0.94687 0.98115 1.69894 1.47167 1.04918 1.31560 0.86866 0.80236 0.78925 0.83778 1.19906 1.21054 1.19068 1.20268 0.81574 0.78394 0.89546 1.90651 1.52962 1.58120 1.39860 1.21414 0.99041 0.97708 0.94905 1.22213 1.02774 0.97530 0.95361 1.22150 0.87131 0.92257 0.95140 0.87788 1.22481 0.99383 1.01433 1.01156 1.87965 1.34709 1.38612 1.68117 1.22103 0.97430 0.87861 0.89935 0.92366 1.21747 0.97334 0.98916 1.02076 1.22054 0.98013 0.99519 0.97211 0.88712 0.88202 0.87805 0.89167 0.90261 0.95326 0.94551 0.92557 0.89264 0.89944 0.90087 0.91909 0.91249 0.91914 0.91195 0.92084 0.91660 0.89767 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.23 9.27 -36.02 -0.33 -2.57 16 3 C 0.13 2.06 5.49 -5.19 -0.03 2.03 16 4 N -0.59 -12.00 2.46 -176.43 -0.43 -12.43 16 5 C 0.22 5.30 4.24 -5.20 -0.02 5.28 16 6 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 10 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.52 10.47 6.82 -10.99 -0.07 10.40 16 15 O -0.54 -13.31 15.50 5.56 0.09 -13.23 16 16 C -0.11 -1.63 1.45 -91.58 -0.13 -1.76 16 17 C -0.14 -1.97 4.67 -26.59 -0.12 -2.10 16 18 C 0.09 1.05 3.91 -26.68 -0.10 0.94 16 19 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.19 -1.74 8.65 37.16 0.32 -1.42 16 21 O -0.37 -4.91 10.24 -35.23 -0.36 -5.27 16 22 C 0.08 0.99 2.94 -26.68 -0.08 0.91 16 23 H 0.06 0.61 6.34 -51.93 -0.33 0.28 16 24 C -0.14 -1.45 9.57 37.16 0.36 -1.09 16 25 C -0.13 -1.84 4.18 -26.59 -0.11 -1.95 16 26 H 0.09 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 28 H 0.10 1.28 7.49 -52.49 -0.39 0.88 16 29 H 0.09 1.47 7.68 -51.92 -0.40 1.07 16 30 H 0.08 1.06 4.80 -51.93 -0.25 0.81 16 31 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 32 H 0.04 0.97 6.79 -51.92 -0.35 0.61 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.09 1.13 4.82 -51.93 -0.25 0.88 16 35 H 0.08 1.11 6.10 -51.93 -0.32 0.79 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.58 4.97 -51.93 -0.26 0.33 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.40 7.84 -51.93 -0.41 0.99 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -33.58 342.65 -6.93 -40.51 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.13 Total: 1.56 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.36 Total: -6.50 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.34 Total: -39.28 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.27 Total: -18.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.58 -6.93 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359436867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.828 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds