Wall clock time and date at job start Tue Mar 31 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00580 * 2 1 4 4 N 1.46503 * 109.47117 * 125.45746 * 3 2 1 5 5 C 1.46505 * 120.00063 * 276.08246 * 4 3 2 6 6 C 1.50698 * 109.46807 * 89.99871 * 5 4 3 7 7 H 1.07994 * 120.00339 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99512 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00026 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00157 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47376 * 89.99276 * 10 8 6 12 12 H 1.48496 * 109.47016 * 209.99802 * 10 8 6 13 13 H 1.48506 * 109.47082 * 329.99647 * 10 8 6 14 14 C 1.34778 * 119.99726 * 96.08150 * 4 3 2 15 15 O 1.21275 * 119.99711 * 185.25311 * 14 4 3 16 16 C 1.50698 * 119.99812 * 5.25267 * 14 4 3 17 17 C 1.53175 * 109.54402 * 270.66623 * 16 14 4 18 18 C 1.53104 * 109.15475 * 183.24256 * 17 16 14 19 19 H 1.09008 * 109.48132 * 177.50537 * 18 17 16 20 20 C 1.52999 * 109.42010 * 297.48820 * 18 17 16 21 21 O 1.42902 * 109.48476 * 57.48080 * 18 17 16 22 22 C 1.42901 * 114.09757 * 298.88175 * 21 18 17 23 23 H 1.08993 * 109.48203 * 301.17975 * 22 21 18 24 24 C 1.53003 * 109.49102 * 181.14813 * 22 21 18 25 25 C 1.53095 * 109.41132 * 61.16115 * 22 21 18 26 26 H 1.08004 * 119.99685 * 359.71822 * 1 2 3 27 27 H 1.07994 * 120.00088 * 179.72318 * 1 2 3 28 28 H 1.08004 * 119.99685 * 180.28177 * 2 1 3 29 29 H 1.09002 * 109.47615 * 245.46187 * 3 2 1 30 30 H 1.09004 * 109.46787 * 5.46044 * 3 2 1 31 31 H 1.09000 * 109.47024 * 210.00199 * 5 4 3 32 32 H 1.09002 * 109.46714 * 329.99845 * 5 4 3 33 33 H 0.96996 * 120.00512 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.54377 * 30.85194 * 16 14 4 35 35 H 1.08994 * 109.52817 * 303.06488 * 17 16 14 36 36 H 1.09005 * 109.51822 * 63.25266 * 17 16 14 37 37 H 1.08999 * 109.47239 * 179.97438 * 20 18 17 38 38 H 1.09001 * 109.46897 * 299.99794 * 20 18 17 39 39 H 1.09000 * 109.46761 * 59.99365 * 20 18 17 40 40 H 1.09004 * 109.46929 * 300.05503 * 24 22 21 41 41 H 1.09000 * 109.47030 * 60.05102 * 24 22 21 42 42 H 1.08993 * 109.47375 * 180.02562 * 24 22 21 43 43 H 1.08998 * 109.51961 * 182.48273 * 25 22 21 44 44 H 1.09002 * 109.52186 * 62.30158 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0017 1.3272 1.1251 5 6 2.5400 1.7294 2.4560 6 6 2.0583 0.5159 3.2085 7 1 2.0930 -0.4576 2.7423 8 6 1.5742 0.6484 4.4928 9 7 1.1543 -0.4107 5.1498 10 14 1.5148 2.3322 5.2995 11 1 0.2090 2.9757 5.0065 12 1 1.6748 2.1832 6.7683 13 1 2.6135 3.1762 4.7649 14 6 4.2895 0.9775 0.9357 15 8 5.0433 0.9037 1.8828 16 6 4.7926 0.6783 -0.4530 17 6 4.5964 -0.8096 -0.7595 18 6 5.1834 -1.1199 -2.1391 19 1 5.0864 -2.1862 -2.3440 20 6 4.4265 -0.3247 -3.2047 21 8 6.5646 -0.7539 -2.1627 22 6 6.8040 0.6356 -1.9302 23 1 6.2859 1.2253 -2.6864 24 6 8.3064 0.9146 -2.0065 25 6 6.2840 1.0161 -0.5414 26 1 -0.5400 0.9354 0.0046 27 1 -0.5400 -0.9352 -0.0045 28 1 1.8500 -0.9354 -0.0046 29 1 2.6149 1.4063 -0.9348 30 1 1.3594 2.1312 0.0978 31 1 3.3624 2.1924 3.0013 32 1 1.7224 2.4435 2.3564 33 1 0.8134 -0.3175 6.0531 34 1 4.2398 1.2760 -1.1777 35 1 5.1071 -1.4075 -0.0048 36 1 3.5322 -1.0454 -0.7536 37 1 4.8440 -0.5447 -4.1872 38 1 3.3730 -0.6041 -3.1864 39 1 4.5233 0.7414 -2.9994 40 1 8.8244 0.3245 -1.2505 41 1 8.6765 0.6436 -2.9953 42 1 8.4887 1.9743 -1.8287 43 1 6.4257 2.0846 -0.3796 44 1 6.8300 0.4562 0.2179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359436868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:47 Heat of formation + Delta-G solvation = -65.600420 kcal Electronic energy + Delta-G solvation = -23630.956900 eV Core-core repulsion = 20355.870953 eV Total energy + Delta-G solvation = -3275.085946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42774 -38.61602 -35.75993 -33.75020 -33.32536 -32.86741 -32.05553 -29.69241 -28.25621 -26.70017 -25.54148 -24.23042 -22.50590 -21.84114 -19.88053 -19.43183 -18.23595 -16.93159 -16.67984 -16.37037 -16.21713 -15.33495 -14.80279 -14.60124 -14.22383 -14.12108 -13.88880 -13.45663 -13.03747 -12.91115 -12.66689 -12.57007 -12.27853 -12.13890 -12.02388 -11.76980 -11.71389 -11.63119 -11.15231 -11.09611 -11.03164 -10.82656 -10.62577 -10.49708 -10.12784 -10.06971 -9.60237 -9.50296 -8.94674 -8.82086 -8.55107 -7.75064 -6.04778 -4.01935 2.66331 3.27236 3.31432 3.35966 3.39445 3.70785 3.86181 4.42016 4.68504 4.74880 4.79438 4.88847 5.06008 5.10383 5.19752 5.26900 5.27424 5.33241 5.36903 5.40299 5.45794 5.53799 5.64348 5.74955 5.78601 5.85668 5.88655 5.95861 6.02807 6.04637 6.16592 6.22734 6.33831 6.42193 6.66439 6.96023 6.99413 7.10905 7.26192 7.38619 7.64281 8.23069 8.50877 8.95350 9.01650 9.55752 11.08790 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.005263 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.547967 B = 5318.787984 C = 6018.716856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 C 0.138 3.862 4 N -0.590 5.590 5 C 0.217 3.783 6 C -0.517 4.517 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.512 3.488 15 O -0.534 6.534 16 C -0.109 4.109 17 C -0.141 4.141 18 C 0.091 3.909 19 H 0.104 0.896 20 C -0.187 4.187 21 O -0.375 6.375 22 C 0.085 3.915 23 H 0.059 0.941 24 C -0.144 4.144 25 C -0.132 4.132 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 3.247 -18.652 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.175 4.175 3 C 0.014 3.986 4 N -0.321 5.321 5 C 0.096 3.904 6 C -0.556 4.556 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.299 3.701 15 O -0.410 6.410 16 C -0.131 4.131 17 C -0.179 4.179 18 C 0.034 3.966 19 H 0.121 0.879 20 C -0.245 4.245 21 O -0.294 6.294 22 C 0.027 3.973 23 H 0.077 0.923 24 C -0.201 4.201 25 C -0.170 4.170 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.973 3.054 -17.967 19.179 hybrid contribution -0.653 0.880 0.792 1.351 sum 5.321 3.934 -17.176 18.406 Atomic orbital electron populations 1.23644 0.95767 1.01393 1.00701 1.23179 0.96211 0.98449 0.99647 1.20645 0.92417 0.95936 0.89572 1.47963 1.07727 1.65796 1.10631 1.19667 0.94892 0.96409 0.79428 1.21281 1.40936 0.94418 0.98938 0.90616 1.24845 0.94938 0.96419 0.96856 1.69889 1.42907 1.28816 1.12140 0.86913 0.78738 0.85211 0.79253 1.20224 1.21006 1.18997 1.20269 0.82227 0.77398 0.90209 1.90670 1.55921 1.51250 1.43193 1.21416 0.97515 0.98122 0.96015 1.22219 1.02730 0.94885 0.98054 1.22143 0.81477 0.99527 0.93502 0.87863 1.22481 1.01266 1.01315 0.99398 1.87963 1.24434 1.24832 1.92183 1.22088 0.96605 0.83156 0.95420 0.92322 1.21749 0.93878 1.01779 1.02685 1.22090 0.94437 1.02404 0.98102 0.88901 0.88814 0.87635 0.90463 0.90651 0.94348 0.95906 0.92700 0.89337 0.90213 0.89906 0.91939 0.91167 0.91948 0.91672 0.92063 0.91181 0.90935 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 14.32 29.01 0.42 -2.25 16 2 C -0.16 -2.48 8.96 -36.03 -0.32 -2.81 16 3 C 0.14 2.13 5.81 -5.19 -0.03 2.10 16 4 N -0.59 -11.96 2.45 -176.43 -0.43 -12.39 16 5 C 0.22 5.29 4.22 -5.19 -0.02 5.27 16 6 C -0.52 -14.80 9.63 -34.44 -0.33 -15.13 16 7 H 0.08 2.38 8.01 -52.49 -0.42 1.96 16 8 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 9 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 10 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 14 C 0.51 10.33 6.73 -10.99 -0.07 10.25 16 15 O -0.53 -13.24 15.74 5.56 0.09 -13.15 16 16 C -0.11 -1.60 1.59 -91.59 -0.15 -1.74 16 17 C -0.14 -1.94 4.91 -26.59 -0.13 -2.07 16 18 C 0.09 1.03 3.91 -26.68 -0.10 0.93 16 19 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 20 C -0.19 -1.70 8.65 37.16 0.32 -1.38 16 21 O -0.37 -4.81 10.24 -35.23 -0.36 -5.17 16 22 C 0.08 0.97 2.94 -26.68 -0.08 0.89 16 23 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 24 C -0.14 -1.41 9.57 37.16 0.36 -1.05 16 25 C -0.13 -1.83 4.35 -26.59 -0.12 -1.94 16 26 H 0.09 1.29 7.84 -52.48 -0.41 0.88 16 27 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.11 1.73 6.28 -52.48 -0.33 1.40 16 29 H 0.08 0.94 5.54 -51.93 -0.29 0.65 16 30 H 0.08 1.09 7.63 -51.93 -0.40 0.70 16 31 H 0.04 1.02 6.56 -51.93 -0.34 0.68 16 32 H 0.02 0.53 7.38 -51.93 -0.38 0.14 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.09 1.08 4.48 -51.93 -0.23 0.85 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.10 5.64 -51.93 -0.29 0.81 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.39 7.76 -51.93 -0.40 0.99 16 LS Contribution 341.60 15.07 5.15 5.15 Total: -1.00 -34.02 341.60 -6.87 -40.89 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.06 Total: 1.68 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.36 Total: -6.94 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.34 Total: -39.49 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.27 Total: -18.32 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.02 -6.87 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359436868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.708 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds