Wall clock time and date at job start Tue Mar 31 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50696 * 120.00084 * 2 1 4 4 N 1.46508 * 109.47215 * 125.00242 * 3 2 1 5 5 C 1.46501 * 119.99793 * 270.00047 * 4 3 2 6 6 C 1.50696 * 109.46940 * 269.99885 * 5 4 3 7 7 H 1.08000 * 120.00267 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99900 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99677 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00186 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47259 * 89.99601 * 10 8 6 12 12 H 1.48503 * 109.47449 * 210.00250 * 10 8 6 13 13 H 1.48510 * 109.47068 * 330.00053 * 10 8 6 14 14 C 1.34766 * 120.00193 * 89.99481 * 4 3 2 15 15 O 1.21281 * 120.00078 * 179.97438 * 14 4 3 16 16 C 1.50700 * 120.00402 * 0.02562 * 14 4 3 17 17 O 1.42896 * 109.47766 * 179.97438 * 16 14 4 18 18 C 1.42896 * 114.00446 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46906 * 89.99887 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47231 * 209.99746 * 18 17 16 24 24 H 1.08008 * 120.00260 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.00147 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99699 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47283 * 4.99937 * 3 2 1 28 28 H 1.08997 * 109.47109 * 244.99563 * 3 2 1 29 29 H 1.09002 * 109.47064 * 29.99472 * 5 4 3 30 30 H 1.09001 * 109.47382 * 149.99665 * 5 4 3 31 31 H 0.97005 * 119.99829 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47429 * 59.99113 * 16 14 4 33 33 H 1.09000 * 109.46801 * 299.99642 * 16 14 4 34 34 H 1.09002 * 109.46984 * 330.00066 * 18 17 16 35 35 H 1.08996 * 109.47853 * 300.00254 * 19 18 17 36 36 H 1.09002 * 109.47153 * 60.00282 * 19 18 17 37 37 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 39 39 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 40 40 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 41 41 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 43 43 H 1.08992 * 109.47399 * 300.00058 * 23 18 17 44 44 H 1.09004 * 109.46724 * 60.00544 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8649 2.4249 6 6 2.8443 3.3435 2.4804 7 1 3.3033 3.8370 1.6365 8 6 2.5184 4.0667 3.6082 9 7 2.7671 5.3572 3.6564 10 14 1.7239 3.2134 5.0676 11 1 2.7798 2.7232 5.9896 12 1 0.8469 4.1733 5.7851 13 1 0.9131 2.0651 4.5884 14 6 4.2496 0.8660 0.9824 15 8 5.0199 0.8887 1.9189 16 6 4.6972 0.3181 -0.3482 17 8 6.0574 -0.1094 -0.2542 18 6 6.5824 -0.6491 -1.4687 19 6 7.2105 0.4740 -2.2963 20 6 7.7731 -0.1039 -3.5964 21 6 8.8376 -1.1532 -3.2695 22 6 8.2096 -2.2763 -2.4419 23 6 7.6468 -1.6986 -1.1423 24 1 -0.5401 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9313 29 1 1.4887 1.6966 2.5459 30 1 3.0989 1.3602 3.2260 31 1 2.5382 5.8659 4.4501 32 1 4.6125 1.0949 -1.1081 33 1 4.0680 -0.5286 -0.6226 34 1 5.7770 -1.1133 -2.0380 35 1 6.4523 1.2217 -2.5289 36 1 8.0158 0.9381 -1.7270 37 1 8.2210 0.6961 -4.1859 38 1 6.9681 -0.5683 -4.1659 39 1 9.6427 -0.6888 -2.7000 40 1 9.2381 -1.5652 -4.1958 41 1 8.9678 -3.0240 -2.2094 42 1 7.4045 -2.7406 -3.0114 43 1 8.4521 -1.2345 -0.5730 44 1 7.1993 -2.4988 -0.5527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359440299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:15 Heat of formation + Delta-G solvation = -75.802185 kcal Electronic energy + Delta-G solvation = -22466.382091 eV Core-core repulsion = 19190.853763 eV Total energy + Delta-G solvation = -3275.528328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.60485 -38.73679 -36.35240 -35.62811 -33.19513 -32.13239 -30.97209 -30.23541 -28.87247 -26.77206 -25.45270 -22.80117 -22.45950 -22.00567 -20.11521 -20.03311 -18.49791 -17.09234 -16.89654 -16.35235 -15.74260 -15.56740 -15.15328 -14.61305 -14.44614 -14.35891 -14.03962 -13.79440 -13.20944 -13.11520 -12.83485 -12.47161 -12.37085 -12.30055 -12.04022 -11.76999 -11.60233 -11.31436 -11.21090 -11.14124 -10.94466 -10.77310 -10.63075 -10.52026 -10.41827 -10.13712 -9.56003 -9.41427 -9.29706 -8.93990 -8.57196 -7.76393 -6.07218 -4.05980 2.31747 3.25455 3.30950 3.34695 3.37922 3.40046 4.17843 4.41387 4.54197 4.56590 4.78517 4.91628 5.02448 5.03574 5.15113 5.18730 5.23229 5.26490 5.30343 5.31797 5.33572 5.41077 5.43199 5.58692 5.61825 5.81423 5.82291 5.90993 5.93020 6.01751 6.03618 6.09332 6.16775 6.24091 6.67295 6.67778 6.81170 6.94685 7.21863 7.38345 7.62351 8.20637 8.48078 8.93712 8.99009 9.52965 11.06138 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.003940 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.782809 B = 7104.662537 C = 7750.522436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 C 0.134 3.866 4 N -0.589 5.589 5 C 0.219 3.781 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.509 3.491 15 O -0.517 6.517 16 C 0.047 3.953 17 O -0.355 6.355 18 C 0.089 3.911 19 C -0.144 4.144 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.117 4.117 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -14.840 -16.148 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.191 4.191 3 C 0.011 3.989 4 N -0.322 5.322 5 C 0.099 3.901 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.294 3.706 15 O -0.392 6.392 16 C -0.034 4.034 17 O -0.273 6.273 18 C 0.031 3.969 19 C -0.182 4.182 20 C -0.154 4.154 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.154 4.154 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.094 -14.631 -15.325 21.580 hybrid contribution -0.693 -0.231 0.508 0.890 sum 3.400 -14.862 -14.818 21.260 Atomic orbital electron populations 1.23850 0.95816 1.01895 1.00294 1.23452 0.96478 0.99018 1.00154 1.20634 0.93253 0.95516 0.89526 1.47848 1.10353 1.60846 1.13155 1.19659 0.94894 0.95143 0.80431 1.21334 1.41168 0.91114 1.03175 0.90711 1.24846 0.95281 0.94724 0.98108 1.69899 1.47794 1.06601 1.29268 0.86863 0.79882 0.79664 0.83378 1.19856 1.21061 1.19020 1.19979 0.82342 0.79013 0.89253 1.90698 1.52100 1.54851 1.41538 1.22364 0.84607 0.99260 0.97121 1.88071 1.25130 1.81289 1.32826 1.22133 0.95552 0.93489 0.85761 1.22069 1.01416 0.98389 0.96332 1.21494 0.98464 0.98451 0.96961 1.21585 0.98287 0.96388 0.99767 1.21493 1.00214 0.97729 0.95860 1.21567 0.98417 0.97759 0.97680 0.88691 0.88137 0.87733 0.88971 0.90630 0.95069 0.94535 0.92565 0.90892 0.91108 0.92391 0.91703 0.90815 0.91711 0.92041 0.91713 0.92016 0.91508 0.91979 0.90861 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.02 0.42 -1.72 16 2 C -0.17 -2.26 9.74 -36.03 -0.35 -2.61 16 3 C 0.13 2.09 5.65 -5.19 -0.03 2.06 16 4 N -0.59 -12.27 2.44 -176.44 -0.43 -12.70 16 5 C 0.22 5.44 4.23 -5.19 -0.02 5.42 16 6 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 7 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 10 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.51 10.88 7.75 -10.99 -0.09 10.79 16 15 O -0.52 -13.67 16.08 -14.35 -0.23 -13.90 16 16 C 0.05 0.73 4.78 36.01 0.17 0.90 16 17 O -0.36 -5.96 9.52 -55.14 -0.52 -6.49 16 18 C 0.09 1.07 2.61 -26.73 -0.07 1.00 16 19 C -0.14 -1.59 5.54 -26.73 -0.15 -1.74 16 20 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.12 -0.94 5.92 -26.76 -0.16 -1.09 16 23 C -0.12 -1.25 5.57 -26.76 -0.15 -1.40 16 24 H 0.09 0.95 8.06 -52.48 -0.42 0.53 16 25 H 0.10 1.17 7.84 -52.49 -0.41 0.76 16 26 H 0.10 1.28 7.83 -52.49 -0.41 0.87 16 27 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 28 H 0.08 0.97 6.44 -51.93 -0.33 0.64 16 29 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 30 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.07 1.01 7.13 -51.93 -0.37 0.64 16 33 H 0.07 0.90 7.72 -51.93 -0.40 0.50 16 34 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 35 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -34.93 355.61 -8.59 -43.52 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.69 Total: -1.51 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.18 Total: -4.33 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.34 Total: -39.82 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.76 Total: -20.39 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.93 -8.59 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359440299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.282 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds