Wall clock time and date at job start Tue Mar 31 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 C 1.53006 * 109.46876 * 184.93515 * 3 2 1 5 5 O 1.42898 * 109.46630 * 184.95396 * 4 3 2 6 6 C 1.42904 * 113.99557 * 184.96077 * 5 4 3 7 7 C 1.53003 * 109.47314 * 184.96043 * 6 5 4 8 8 N 1.46904 * 109.46517 * 64.40987 * 7 6 5 9 9 C 1.46894 * 111.00315 * 72.08065 * 8 7 6 10 10 C 1.50697 * 109.47286 * 189.99885 * 9 8 7 11 11 H 1.07994 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99893 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99941 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00237 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46963 * 90.00108 * 14 12 10 16 16 H 1.48495 * 109.47479 * 210.00320 * 14 12 10 17 17 H 1.48503 * 109.46895 * 330.00466 * 14 12 10 18 18 C 1.46902 * 110.99465 * 196.02931 * 8 7 6 19 19 C 1.50704 * 109.47130 * 75.67719 * 18 8 7 20 20 C 1.34517 * 125.79074 * 84.80877 * 19 18 8 21 21 C 1.41379 * 106.84142 * 180.02562 * 20 19 18 22 22 C 1.34518 * 106.83924 * 359.97438 * 21 20 19 23 23 O 1.34302 * 108.42209 * 359.73783 * 22 21 20 24 24 H 1.08991 * 109.47306 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47030 * 300.00555 * 1 2 3 26 26 H 1.09001 * 109.47180 * 59.99787 * 1 2 3 27 27 H 1.08998 * 109.46846 * 239.99910 * 2 1 3 28 28 H 1.09004 * 109.46674 * 120.00265 * 2 1 3 29 29 H 1.09000 * 109.47091 * 64.93766 * 3 2 1 30 30 H 1.09002 * 109.47140 * 304.93340 * 3 2 1 31 31 H 1.08996 * 109.46914 * 64.95244 * 4 3 2 32 32 H 1.09001 * 109.47164 * 304.95321 * 4 3 2 33 33 H 1.09004 * 109.46810 * 64.96075 * 6 5 4 34 34 H 1.09000 * 109.47527 * 304.96842 * 6 5 4 35 35 H 1.08993 * 109.46970 * 304.41368 * 7 6 5 36 36 H 1.08996 * 109.47003 * 184.40680 * 7 6 5 37 37 H 1.09005 * 109.46882 * 310.00042 * 9 8 7 38 38 H 1.09003 * 109.47117 * 69.99183 * 9 8 7 39 39 H 0.96997 * 120.00201 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.47624 * 315.68030 * 18 8 7 41 41 H 1.08997 * 109.47131 * 195.67282 * 18 8 7 42 42 H 1.07998 * 126.57465 * 0.03632 * 20 19 18 43 43 H 1.07998 * 126.58348 * 179.97438 * 21 20 19 44 44 H 1.08007 * 125.78423 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5651 1.4442 -0.1241 5 8 4.0508 2.7831 -0.0083 6 6 5.4579 2.9113 -0.2222 7 6 5.8851 4.3558 0.0465 8 7 5.6640 4.6762 1.4630 9 6 6.6442 3.9920 2.3168 10 6 6.2433 4.1421 3.7617 11 1 5.3499 4.6912 4.0199 12 6 7.0176 3.5792 4.7540 13 7 6.6679 3.7106 6.0150 14 14 8.5632 2.6300 4.3073 15 1 9.7218 3.5584 4.2738 16 1 8.8053 1.5727 5.3215 17 1 8.3912 2.0045 2.9715 18 6 5.6950 6.1280 1.6852 19 6 4.4086 6.7392 1.1926 20 6 3.2619 6.8280 1.8903 21 6 2.3202 7.4666 1.0511 22 6 2.9479 7.7304 -0.1090 23 8 4.2143 7.2931 -0.0154 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7507 1.9301 0.9309 30 1 1.6064 1.9812 -0.8425 31 1 3.8511 1.0364 -1.0936 32 1 3.9948 0.8319 0.6687 33 1 5.6941 2.6484 -1.2533 34 1 5.9907 2.2430 0.4543 35 1 5.2961 5.0303 -0.5748 36 1 6.9423 4.4722 -0.1917 37 1 6.6767 2.9340 2.0567 38 1 7.6291 4.4337 2.1652 39 1 7.2124 3.3143 6.7130 40 1 6.5346 6.5611 1.1414 41 1 5.8087 6.3302 2.7502 42 1 3.0932 6.4786 2.8982 43 1 1.2939 7.6983 1.2947 44 1 2.5092 8.2161 -0.9682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362171143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:37 Heat of formation + Delta-G solvation = -37.266775 kcal Electronic energy + Delta-G solvation = -22554.730100 eV Core-core repulsion = 19280.872792 eV Total energy + Delta-G solvation = -3273.857307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03708 -38.07261 -36.63209 -34.75811 -32.57368 -32.47443 -30.71713 -29.62228 -28.40208 -26.92948 -24.34073 -23.13121 -22.34353 -21.22819 -21.00046 -20.31783 -19.54780 -17.04548 -16.83131 -16.23175 -16.03186 -15.68549 -14.96509 -14.71048 -14.58504 -14.18419 -13.89918 -13.63860 -13.09137 -12.90310 -12.59007 -12.40415 -12.32005 -12.19171 -12.10011 -11.89485 -11.55420 -11.42595 -11.14536 -11.07565 -10.79264 -10.72607 -10.58564 -10.52767 -10.17007 -9.85605 -9.42026 -9.31171 -9.11478 -8.59813 -7.95820 -7.41681 -6.07134 -4.04490 2.21209 3.14420 3.25316 3.33719 3.34151 3.47904 4.00230 4.39255 4.77766 4.95865 5.06597 5.11654 5.18624 5.24863 5.34382 5.46936 5.50809 5.52652 5.62465 5.65218 5.68700 5.75213 5.79519 5.85268 5.91398 5.97776 6.04186 6.10070 6.26317 6.27240 6.33483 6.34490 6.39651 6.51110 6.62061 6.76423 6.87048 7.03048 7.53845 7.65691 7.66907 7.88381 7.96962 8.62951 9.02258 9.54231 11.05816 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.006429 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.197834 B = 4353.885446 C = 6309.258665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.062 3.938 5 O -0.365 6.365 6 C 0.072 3.928 7 C 0.052 3.948 8 N -0.511 5.511 9 C 0.161 3.839 10 C -0.509 4.509 11 H 0.083 0.917 12 C 0.070 3.930 13 N -0.898 5.898 14 Si 0.873 3.127 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.138 3.862 19 C 0.013 3.987 20 C -0.194 4.194 21 C -0.211 4.211 22 C -0.062 4.062 23 O -0.185 6.185 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.033 0.967 38 H -0.015 1.015 39 H 0.264 0.736 40 H 0.037 0.963 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -0.623 -14.228 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.016 4.016 5 O -0.283 6.283 6 C -0.005 4.005 7 C -0.076 4.076 8 N -0.236 5.236 9 C 0.035 3.965 10 C -0.548 4.548 11 H 0.101 0.899 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.700 3.300 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.193 1.193 18 C 0.010 3.990 19 C -0.037 4.037 20 C -0.213 4.213 21 C -0.230 4.230 22 C -0.130 4.130 23 O -0.081 6.081 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.003 0.997 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.139 0.861 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.404 -0.678 -14.081 15.923 hybrid contribution 1.537 -0.550 -0.306 1.661 sum -5.867 -1.228 -14.387 15.586 Atomic orbital electron populations 1.21749 0.95672 1.01377 1.01992 1.21445 0.96003 0.96509 1.01998 1.21506 0.93902 0.96648 1.03387 1.22430 0.94872 0.85232 0.99021 1.88010 1.22087 1.25840 1.92398 1.22489 0.82583 0.97549 0.97907 1.22139 0.98105 0.95654 0.91735 1.61802 1.52422 1.05958 1.03371 1.20265 0.88291 0.94096 0.93835 1.21017 1.11186 1.34841 0.87710 0.89893 1.24880 0.97462 0.95914 0.94888 1.69887 1.39070 1.45407 0.99296 0.86907 0.84174 0.80381 0.78523 1.20282 1.21153 1.19321 1.20544 0.88227 0.87921 1.02281 1.22665 0.98934 0.99314 0.82808 1.21557 0.92548 1.05059 1.02181 1.21779 1.00889 1.05493 0.94863 1.23768 0.82782 1.05744 1.00691 1.83975 1.29903 1.59843 1.34417 0.92885 0.92482 0.92830 0.92258 0.91740 0.90684 0.91706 0.94518 0.93536 0.94208 0.92972 0.90813 0.94125 0.94938 0.99744 0.92647 0.94535 0.86053 0.83468 0.84181 0.79025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.31 5.93 -26.73 -0.16 -1.46 16 3 C -0.12 -1.54 5.58 -26.73 -0.15 -1.69 16 4 C 0.06 0.91 5.94 37.16 0.22 1.13 16 5 O -0.36 -6.70 10.28 -35.23 -0.36 -7.06 16 6 C 0.07 1.22 6.09 37.16 0.23 1.45 16 7 C 0.05 0.94 5.18 -3.82 -0.02 0.92 16 8 N -0.51 -10.79 4.31 -237.52 -1.02 -11.81 16 9 C 0.16 3.80 3.64 -4.98 -0.02 3.78 16 10 C -0.51 -14.07 8.79 -34.44 -0.30 -14.37 16 11 H 0.08 2.50 7.55 -52.49 -0.40 2.10 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 14 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 18 C 0.14 2.71 5.34 -4.97 -0.03 2.68 16 19 C 0.01 0.25 6.15 -35.62 -0.22 0.03 16 20 C -0.19 -3.54 10.81 -39.70 -0.43 -3.97 16 21 C -0.21 -3.25 10.91 -39.70 -0.43 -3.68 16 22 C -0.06 -0.90 12.09 29.42 0.36 -0.54 16 23 O -0.18 -3.18 10.23 5.71 0.06 -3.12 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 35 H 0.07 1.31 6.99 -51.93 -0.36 0.95 16 36 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.03 0.78 5.40 -51.93 -0.28 0.50 16 38 H -0.02 -0.35 7.55 -51.93 -0.39 -0.74 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.04 0.66 8.00 -51.93 -0.42 0.24 16 41 H 0.12 2.58 6.58 -51.93 -0.34 2.24 16 42 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 43 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.19 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -31.04 359.32 -8.10 -39.14 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.61 Total: 2.19 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.68 Total: -14.89 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.25 Total: -38.04 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.30 Total: -10.18 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.04 -8.10 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362171143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.871 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds