Wall clock time and date at job start Tue Mar 31 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47570 * 2 1 4 4 N 1.46488 * 109.47580 * 180.02562 * 3 2 1 5 5 C 1.37101 * 120.00222 * 264.75628 * 4 3 2 6 6 H 1.07995 * 120.00312 * 145.32978 * 5 4 3 7 7 C 1.38950 * 119.99824 * 325.33157 * 5 4 3 8 8 N 1.31408 * 120.00137 * 167.40452 * 7 5 4 9 9 Si 1.86804 * 119.99875 * 347.40355 * 7 5 4 10 10 H 1.48499 * 109.46949 * 96.09073 * 9 7 5 11 11 H 1.48500 * 109.47126 * 216.09315 * 9 7 5 12 12 H 1.48491 * 109.47045 * 336.09330 * 9 7 5 13 13 C 1.34780 * 120.00534 * 84.75348 * 4 3 2 14 14 O 1.21291 * 120.00547 * 180.64852 * 13 4 3 15 15 C 1.50702 * 119.99407 * 0.65111 * 13 4 3 16 16 H 1.09000 * 109.48393 * 334.25815 * 15 13 4 17 17 C 1.52653 * 109.47868 * 214.23585 * 15 13 4 18 18 C 1.54042 * 110.39545 * 166.49039 * 17 15 13 19 19 C 1.52460 * 111.03788 * 315.21821 * 18 17 15 20 20 C 1.54097 * 109.29908 * 114.21584 * 19 18 17 21 21 C 1.52045 * 109.16968 * 281.97912 * 20 19 18 22 22 C 1.51104 * 109.11556 * 72.60812 * 21 20 19 23 23 O 1.20762 * 120.41372 * 68.82428 * 22 21 20 24 24 C 1.49495 * 119.16017 * 249.11020 * 22 21 20 25 25 H 1.08998 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46910 * 300.00471 * 1 2 3 27 27 H 1.09003 * 109.47294 * 59.99903 * 1 2 3 28 28 H 1.08994 * 109.47136 * 239.99663 * 2 1 3 29 29 H 1.09003 * 109.47294 * 120.00097 * 2 1 3 30 30 H 1.09001 * 109.47391 * 59.99378 * 3 2 1 31 31 H 1.09003 * 109.46892 * 300.00344 * 3 2 1 32 32 H 0.97003 * 119.99934 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.31761 * 46.20524 * 17 15 13 34 34 H 1.08998 * 109.31674 * 286.77333 * 17 15 13 35 35 H 1.08999 * 109.16623 * 194.81296 * 18 17 15 36 36 H 1.08998 * 109.15985 * 75.61580 * 18 17 15 37 37 H 1.08999 * 109.50147 * 354.26699 * 19 18 17 38 38 H 1.09006 * 109.52719 * 234.17729 * 19 18 17 39 39 H 1.09006 * 109.52137 * 162.06989 * 20 19 18 40 40 H 1.09001 * 109.52454 * 41.88908 * 20 19 18 41 41 H 1.09006 * 109.53062 * 312.71574 * 21 20 19 42 42 H 1.08999 * 109.59456 * 192.53926 * 21 20 19 43 43 H 1.09001 * 109.79888 * 162.33353 * 24 22 21 44 44 H 1.08998 * 109.79594 * 283.18432 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5508 1.1814 6 1 5.1272 1.0286 1.3123 7 6 3.6817 2.3325 2.2111 8 7 4.1954 2.2460 3.4176 9 14 2.2668 3.5065 1.8804 10 1 0.9852 2.8535 2.2498 11 1 2.4462 4.7384 2.6901 12 1 2.2442 3.8607 0.4386 13 6 4.1785 1.3359 -1.1632 14 8 5.3913 1.3241 -1.1627 15 6 3.4245 1.2315 -2.4639 16 1 2.4368 0.8092 -2.2787 17 6 4.1920 0.3286 -3.4261 18 6 3.3001 -0.0665 -4.6184 19 6 1.9074 -0.4721 -4.1493 20 6 0.8769 0.5475 -4.6719 21 6 0.9304 1.7983 -3.8092 22 6 2.1992 2.5586 -4.1182 23 8 2.3416 3.1013 -5.1876 24 6 3.2784 2.6250 -3.0858 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.8396 2.7914 4.1365 33 1 4.5100 -0.5715 -2.8999 34 1 5.0713 0.8578 -3.7933 35 1 3.7579 -0.9032 -5.1459 36 1 3.2159 0.7812 -5.2984 37 1 1.8812 -0.4900 -3.0597 38 1 1.6670 -1.4628 -4.5354 39 1 -0.1219 0.1136 -4.6229 40 1 1.1121 0.8066 -5.7042 41 1 0.9222 1.5156 -2.7565 42 1 0.0669 2.4278 -4.0240 43 1 4.2180 2.9209 -3.5524 44 1 3.0065 3.3442 -2.3133 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362582759.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:14 Heat of formation + Delta-G solvation = -76.198614 kcal Electronic energy + Delta-G solvation = -24487.913706 eV Core-core repulsion = 21212.368187 eV Total energy + Delta-G solvation = -3275.545519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63540 -38.86329 -36.60352 -35.71282 -33.34646 -32.80762 -31.69512 -31.41276 -26.64745 -26.42444 -26.00596 -24.40431 -22.22295 -21.58240 -20.49310 -19.31501 -18.44190 -17.13524 -16.92672 -16.10492 -15.65545 -15.35721 -14.99793 -14.53722 -14.39203 -14.07429 -13.81911 -13.73792 -13.58384 -13.26805 -12.69254 -12.50046 -12.33666 -12.19035 -12.06162 -11.97498 -11.64734 -11.48915 -11.36395 -11.09180 -11.05688 -10.95951 -10.69114 -10.52555 -10.24383 -10.20218 -10.05727 -9.74146 -9.54781 -9.12898 -8.47108 -7.85153 -6.39228 -4.00828 1.97436 2.95875 3.11000 3.16868 3.60222 4.04734 4.08712 4.28229 4.59552 4.74179 4.78823 4.88950 5.05994 5.06703 5.14312 5.17859 5.21631 5.36515 5.38790 5.47183 5.54355 5.57423 5.66847 5.69160 5.70629 5.80587 5.88579 5.90345 5.94724 5.98355 6.06165 6.10912 6.16250 6.20718 6.24166 6.40690 6.46981 6.49958 6.66630 7.51091 7.52002 8.22185 8.46448 8.91177 9.27585 9.70895 10.72950 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.006940 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.824478 B = 4033.759546 C = 4280.358373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.091 3.909 4 N -0.466 5.466 5 C -0.311 4.311 6 H 0.109 0.891 7 C 0.054 3.946 8 N -0.871 5.871 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.268 1.268 13 C 0.471 3.529 14 O -0.560 6.560 15 C -0.113 4.113 16 H 0.101 0.899 17 C -0.102 4.102 18 C -0.131 4.131 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.180 4.180 22 C 0.374 3.626 23 O -0.466 6.466 24 C -0.163 4.163 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.274 0.726 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 -4.004 -12.104 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C -0.032 4.032 4 N -0.187 5.187 5 C -0.438 4.438 6 H 0.126 0.874 7 C -0.151 4.151 8 N -0.509 5.509 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.193 1.193 13 C 0.259 3.741 14 O -0.441 6.441 15 C -0.134 4.134 16 H 0.119 0.881 17 C -0.140 4.140 18 C -0.168 4.168 19 C -0.172 4.172 20 C -0.147 4.147 21 C -0.218 4.218 22 C 0.251 3.749 23 O -0.340 6.340 24 C -0.201 4.201 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.339 -3.656 -12.440 16.584 hybrid contribution -0.870 0.698 0.310 1.158 sum -11.209 -2.958 -12.130 16.779 Atomic orbital electron populations 1.21765 0.95943 1.01598 1.01659 1.22004 0.95179 0.97659 1.03226 1.21956 0.83721 0.96680 1.00860 1.43781 1.03359 1.65315 1.06247 1.19146 1.07866 1.28749 0.88085 0.87364 1.25354 0.98034 0.96605 0.95096 1.69659 1.41909 1.39060 1.00233 0.86796 0.81700 0.80936 0.78687 1.20280 1.21867 1.19285 1.20000 0.87986 0.82086 0.84025 1.90567 1.13821 1.53145 1.86550 1.21582 1.01652 0.95180 0.95014 0.88093 1.21589 0.97979 0.99608 0.94839 1.21880 0.95351 1.01368 0.98215 1.22001 0.94457 0.98667 1.02069 1.21603 1.00027 0.93817 0.99227 1.22233 0.97841 0.98823 1.02914 1.24379 0.88580 0.75062 0.86904 1.90379 1.80557 1.37929 1.25156 1.22071 1.00152 0.98530 0.99354 0.92547 0.92662 0.92948 0.91929 0.90403 0.91587 0.92042 0.91584 0.91201 0.90860 0.91591 0.91931 0.90450 0.91514 0.90853 0.91090 0.88983 0.88872 0.88189 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.14 -2.20 5.98 -26.73 -0.16 -2.36 16 3 C 0.09 1.70 3.26 -4.05 -0.01 1.69 16 4 N -0.47 -10.70 2.31 -114.82 -0.26 -10.96 16 5 C -0.31 -8.58 9.53 -14.93 -0.14 -8.72 16 6 H 0.11 3.39 7.85 -52.49 -0.41 2.98 16 7 C 0.05 1.46 5.44 -17.47 -0.09 1.36 16 8 N -0.87 -24.98 13.96 55.50 0.77 -24.21 16 9 Si 0.89 20.13 24.53 -169.99 -4.17 15.96 16 10 H -0.28 -5.78 6.89 56.52 0.39 -5.39 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -5.74 6.63 56.52 0.37 -5.37 16 13 C 0.47 10.38 6.49 -10.98 -0.07 10.30 16 14 O -0.56 -14.68 16.27 5.55 0.09 -14.59 16 15 C -0.11 -1.82 1.25 -91.80 -0.11 -1.94 16 16 H 0.10 1.41 0.68 -51.93 -0.04 1.38 16 17 C -0.10 -1.52 4.54 -26.37 -0.12 -1.64 16 18 C -0.13 -1.55 5.37 -26.46 -0.14 -1.69 16 19 C -0.13 -1.37 5.51 -26.43 -0.15 -1.51 16 20 C -0.11 -1.04 5.63 -26.64 -0.15 -1.19 16 21 C -0.18 -1.94 5.45 -28.17 -0.15 -2.09 16 22 C 0.37 5.17 4.17 -29.42 -0.12 5.05 16 23 O -0.47 -7.57 17.42 6.00 0.10 -7.47 16 24 C -0.16 -2.52 5.04 -28.31 -0.14 -2.66 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.88 6.27 -51.93 -0.33 0.56 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.34 2.42 -51.93 -0.13 1.21 16 31 H 0.06 0.97 5.46 -51.93 -0.28 0.69 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 33 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 34 H 0.07 1.16 7.85 -51.93 -0.41 0.76 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.79 5.66 -51.93 -0.29 0.50 16 37 H 0.08 0.83 4.78 -51.93 -0.25 0.58 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16 41 H 0.09 0.94 5.06 -51.93 -0.26 0.68 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.60 7.83 -51.93 -0.41 1.19 16 44 H 0.10 1.64 8.00 -51.93 -0.42 1.22 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -31.76 323.60 -6.38 -38.13 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.58 Total: 5.11 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.20 Total: -6.85 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.51 Total: -35.17 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.19 Total: -22.05 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.17 Total: 15.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.76 -6.38 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362582759.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.067 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds