Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47556 * 2 1 4 4 N 1.46501 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.37093 * 120.00197 * 262.30922 * 4 3 2 6 6 H 1.07998 * 120.00156 * 199.80368 * 5 4 3 7 7 C 1.38958 * 119.99911 * 19.80020 * 5 4 3 8 8 N 1.31408 * 119.99686 * 7.11486 * 7 5 4 9 9 Si 1.86801 * 119.99840 * 187.11696 * 7 5 4 10 10 H 1.48495 * 109.47197 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47041 * 120.00231 * 9 7 5 12 12 H 1.48499 * 109.46708 * 240.00094 * 9 7 5 13 13 C 1.34781 * 119.99888 * 82.30417 * 4 3 2 14 14 O 1.21296 * 119.99982 * 5.70266 * 13 4 3 15 15 C 1.50698 * 119.99784 * 185.69589 * 13 4 3 16 16 H 1.08997 * 109.73513 * 48.80498 * 15 13 4 17 17 C 1.53581 * 109.73802 * 169.51113 * 15 13 4 18 18 C 1.52948 * 109.41979 * 191.76432 * 17 15 13 19 19 C 1.52334 * 110.21777 * 281.66750 * 18 17 15 20 20 C 1.53452 * 109.56481 * 315.59704 * 19 18 17 21 21 C 1.53905 * 108.28341 * 114.17925 * 20 19 18 22 22 C 1.51205 * 107.17877 * 290.68464 * 21 20 19 23 23 O 1.20759 * 120.12767 * 251.61073 * 22 21 20 24 24 C 1.50232 * 119.74052 * 71.62913 * 22 21 20 25 25 H 1.09005 * 109.46429 * 300.00009 * 1 2 3 26 26 H 1.08990 * 109.47230 * 59.99529 * 1 2 3 27 27 H 1.08994 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46873 * 240.00273 * 2 1 3 29 29 H 1.08999 * 109.47339 * 120.00670 * 2 1 3 30 30 H 1.09003 * 109.47027 * 300.00283 * 3 2 1 31 31 H 1.08997 * 109.46748 * 60.00142 * 3 2 1 32 32 H 0.97008 * 119.99774 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.47918 * 311.74446 * 17 15 13 34 34 H 1.08994 * 109.47705 * 71.77534 * 17 15 13 35 35 H 1.08998 * 109.34554 * 161.43593 * 18 17 15 36 36 H 1.08996 * 109.22414 * 41.81814 * 18 17 15 37 37 H 1.09005 * 109.45765 * 195.57272 * 19 18 17 38 38 H 1.08998 * 109.45754 * 75.62592 * 19 18 17 39 39 H 1.09003 * 109.69893 * 354.48902 * 20 19 18 40 40 H 1.08996 * 109.70193 * 233.88361 * 20 19 18 41 41 H 1.09007 * 109.91273 * 171.26647 * 21 20 19 42 42 H 1.08996 * 109.91264 * 50.10336 * 21 20 19 43 43 H 1.09002 * 109.40112 * 127.26326 * 24 22 21 44 44 H 1.08992 * 109.33238 * 7.46891 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.6011 1.1757 6 1 5.2232 1.9188 1.1603 7 6 3.5585 1.3532 2.3878 8 7 2.3514 0.8342 2.4048 9 14 4.4240 1.7580 3.9930 10 1 5.7636 2.3293 3.7027 11 1 3.6188 2.7470 4.7538 12 1 4.5772 0.5199 4.7985 13 6 4.1785 1.2863 -1.1577 14 8 3.5761 1.2495 -2.2098 15 6 5.6799 1.1574 -1.1441 16 1 5.9791 0.4166 -0.4027 17 6 6.1765 0.7319 -2.5337 18 6 7.6469 0.3205 -2.4443 19 6 8.5372 1.5557 -2.3966 20 6 8.0617 2.5726 -3.4429 21 6 7.5376 3.8167 -2.7037 22 6 6.2573 3.4156 -2.0065 23 8 5.1940 3.8196 -2.4121 24 6 6.3131 2.5129 -0.8070 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.9099 0.6608 3.2510 33 1 5.5842 -0.1115 -2.8889 34 1 6.0739 1.5661 -3.2276 35 1 7.9078 -0.2792 -3.3163 36 1 7.8001 -0.2700 -1.5411 37 1 9.5670 1.2696 -2.6104 38 1 8.4836 2.0038 -1.4044 39 1 7.2618 2.1369 -4.0416 40 1 8.8942 2.8521 -4.0885 41 1 7.3371 4.6156 -3.4177 42 1 8.2717 4.1490 -1.9698 43 1 5.7678 2.9722 0.0176 44 1 7.3528 2.3643 -0.5153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362582760.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = -87.119242 kcal Electronic energy + Delta-G solvation = -24190.411815 eV Core-core repulsion = 20914.392742 eV Total energy + Delta-G solvation = -3276.019072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75212 -40.01166 -37.92199 -36.97050 -34.55311 -33.75035 -33.14455 -32.04907 -27.98033 -27.78704 -26.86681 -25.58708 -23.30553 -22.15999 -21.32540 -20.97858 -19.90247 -18.73694 -17.83069 -17.13577 -16.57822 -16.34582 -16.21219 -15.99676 -15.47536 -15.20251 -15.13858 -14.88723 -14.56482 -14.29761 -13.95822 -13.52163 -13.39004 -13.16755 -13.02254 -12.76746 -12.72751 -12.60947 -12.49907 -12.15887 -12.11299 -12.06488 -11.91855 -11.82044 -11.51327 -11.45621 -11.17159 -11.11486 -10.72207 -10.30498 -10.06311 -9.55389 -8.12501 -5.85327 1.08994 1.46141 1.51495 1.62833 2.14604 2.33887 3.01795 3.21675 3.22290 3.82179 3.91481 3.97539 4.04862 4.21781 4.24392 4.29613 4.37572 4.47766 4.48795 4.56725 4.67886 4.72340 4.76216 4.80298 4.90255 4.98547 5.06978 5.08119 5.13057 5.15209 5.19619 5.24885 5.28718 5.35373 5.44242 5.49145 5.53462 5.59048 5.65705 5.87943 5.96692 6.58630 6.70616 7.21299 7.70374 8.13346 8.82335 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.006663 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.052846 B = 4201.473473 C = 4992.655569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.148 3.852 4 N -0.458 5.458 5 C -0.352 4.352 6 H 0.119 0.881 7 C -0.011 4.011 8 N -0.886 5.886 9 Si 0.989 3.011 10 H -0.251 1.251 11 H -0.287 1.287 12 H -0.281 1.281 13 C 0.449 3.551 14 O -0.642 6.642 15 C -0.070 4.070 16 H 0.104 0.896 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.160 4.160 22 C 0.355 3.645 23 O -0.506 6.506 24 C -0.175 4.175 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.007 0.993 29 H 0.082 0.918 30 H 0.005 0.995 31 H 0.087 0.913 32 H 0.267 0.733 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.297 0.924 -2.344 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.024 3.976 4 N -0.175 5.175 5 C -0.479 4.479 6 H 0.136 0.864 7 C -0.212 4.212 8 N -0.525 5.525 9 Si 0.814 3.186 10 H -0.174 1.174 11 H -0.213 1.213 12 H -0.207 1.207 13 C 0.239 3.761 14 O -0.531 6.531 15 C -0.091 4.091 16 H 0.122 0.878 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.166 4.166 20 C -0.156 4.156 21 C -0.197 4.197 22 C 0.233 3.767 23 O -0.382 6.382 24 C -0.212 4.212 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.025 0.975 29 H 0.101 0.899 30 H 0.023 0.977 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.288 1.073 -2.894 13.641 hybrid contribution -0.727 0.093 0.738 1.040 sum 12.561 1.166 -2.155 12.798 Atomic orbital electron populations 1.21487 0.94876 1.01247 1.00692 1.21658 0.96173 0.96968 0.99561 1.21080 0.81263 0.97274 0.97968 1.43977 1.05475 1.61423 1.06609 1.20334 0.98894 1.45642 0.82983 0.86364 1.26210 0.97018 0.95535 1.02453 1.70197 1.14205 1.41082 1.27034 0.84908 0.78899 0.77598 0.77240 1.17429 1.21312 1.20673 1.20950 0.91179 0.80833 0.83169 1.90471 1.71661 1.58336 1.32595 1.21106 0.90514 0.97786 0.99721 0.87766 1.21834 0.97607 1.00730 0.94585 1.21499 0.91654 0.98801 1.03147 1.21962 0.99986 0.94779 0.99920 1.21967 1.01375 0.93885 0.98390 1.22642 0.95544 1.00095 1.01467 1.25347 0.90860 0.76654 0.83836 1.90456 1.35691 1.48852 1.63191 1.22595 1.05389 0.94963 0.98263 0.92695 0.94072 0.92092 0.97463 0.89940 0.97711 0.89521 0.92274 0.94200 0.92331 0.90835 0.90573 0.88783 0.89850 0.92897 0.88101 0.89922 0.85195 0.89472 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.91 71.98 0.71 -4.38 16 2 C -0.11 -5.22 5.64 30.59 0.17 -5.05 16 3 C 0.15 7.97 4.53 86.38 0.39 8.36 16 4 N -0.46 -24.47 2.65 -635.53 -1.68 -26.15 16 5 C -0.35 -17.43 8.40 84.04 0.71 -16.73 16 6 H 0.12 5.27 4.76 -2.91 -0.01 5.25 16 7 C -0.01 -0.53 5.20 84.93 0.44 -0.08 16 8 N -0.89 -44.78 8.00 21.66 0.17 -44.60 16 9 Si 0.99 37.85 29.56 68.60 2.03 39.88 16 10 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 11 H -0.29 -11.19 7.11 99.48 0.71 -10.49 16 12 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 13 C 0.45 23.35 6.07 87.66 0.53 23.88 16 14 O -0.64 -38.17 15.64 -3.08 -0.05 -38.22 16 15 C -0.07 -2.73 1.73 -11.23 -0.02 -2.75 16 16 H 0.10 3.86 7.57 -2.39 -0.02 3.84 16 17 C -0.11 -3.77 4.14 30.77 0.13 -3.64 16 18 C -0.11 -2.52 5.62 30.36 0.17 -2.35 16 19 C -0.13 -2.13 5.44 30.53 0.17 -1.97 16 20 C -0.12 -2.25 5.60 31.05 0.17 -2.07 16 21 C -0.16 -3.48 5.83 30.31 0.18 -3.30 16 22 C 0.35 12.16 4.29 29.12 0.12 12.28 16 23 O -0.51 -23.66 17.09 -1.45 -0.02 -23.68 16 24 C -0.17 -5.75 4.28 29.82 0.13 -5.62 16 25 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.08 4.33 6.12 -2.39 -0.01 4.31 16 30 H 0.00 0.26 7.59 -2.39 -0.02 0.24 16 31 H 0.09 4.80 6.00 -2.39 -0.01 4.79 16 32 H 0.27 12.79 8.31 -92.70 -0.77 12.02 16 33 H 0.04 1.55 7.90 -2.38 -0.02 1.53 16 34 H 0.06 2.18 3.82 -2.39 -0.01 2.17 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.57 7.82 -2.39 -0.02 1.55 16 37 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.08 1.27 4.49 -2.39 -0.01 1.26 16 39 H 0.05 1.31 5.56 -2.39 -0.01 1.30 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 42 H 0.13 1.86 7.97 -2.39 -0.02 1.84 16 43 H 0.09 3.33 5.61 -2.39 -0.01 3.32 16 44 H 0.14 3.11 5.19 -2.39 -0.01 3.10 16 Total: -1.00 -71.87 324.78 5.45 -66.42 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 1.00 Total: 29.78 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 4.00 Total: -3.43 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.51 Total: -70.75 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.07 Total: -61.90 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -71.87 5.45 -66.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362582760.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.703 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds