Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46990 * 2 1 4 4 C 1.53001 * 109.47042 * 240.00101 * 2 1 3 5 5 C 1.52995 * 109.47335 * 300.00108 * 4 2 1 6 6 C 1.53007 * 109.46864 * 300.00049 * 5 4 2 7 7 H 1.09000 * 109.46801 * 300.00238 * 6 5 4 8 8 O 1.42892 * 109.47210 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47184 * 59.99859 * 6 5 4 10 10 H 1.09002 * 109.46996 * 59.99920 * 9 6 5 11 11 C 1.52997 * 109.47052 * 180.02562 * 9 6 5 12 12 H 1.09010 * 109.87140 * 298.76384 * 11 9 6 13 13 C 1.54322 * 109.88589 * 59.94156 * 11 9 6 14 14 C 1.55156 * 102.94150 * 141.61425 * 13 11 9 15 15 C 1.55131 * 101.48497 * 324.32780 * 14 13 11 16 16 N 1.47021 * 109.88415 * 177.75291 * 11 9 6 17 17 C 1.34781 * 125.64782 * 61.59984 * 16 11 9 18 18 O 1.21686 * 119.99847 * 355.06264 * 17 16 11 19 19 C 1.46379 * 119.99688 * 175.06329 * 17 16 11 20 20 H 1.07998 * 120.00015 * 5.11576 * 19 17 16 21 21 C 1.40048 * 119.99352 * 184.84165 * 19 17 16 22 22 N 1.30667 * 120.00425 * 355.18946 * 21 19 17 23 23 Si 1.86801 * 119.99449 * 175.18306 * 21 19 17 24 24 H 1.48503 * 109.47028 * 95.00185 * 23 21 19 25 25 H 1.48502 * 109.47445 * 214.99909 * 23 21 19 26 26 H 1.48501 * 109.47603 * 335.00204 * 23 21 19 27 27 C 1.52999 * 109.47199 * 119.99818 * 2 1 3 28 28 H 1.08999 * 109.46860 * 299.99747 * 1 2 3 29 29 H 1.08994 * 109.47344 * 59.99915 * 1 2 3 30 30 H 1.08998 * 109.46990 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46825 * 60.00020 * 4 2 1 32 32 H 1.09000 * 109.46941 * 179.97438 * 4 2 1 33 33 H 1.08994 * 109.47385 * 59.99420 * 5 4 2 34 34 H 1.08995 * 109.47478 * 180.02562 * 5 4 2 35 35 H 0.96700 * 113.99948 * 59.99818 * 8 6 5 36 36 H 1.09005 * 110.71814 * 259.97301 * 13 11 9 37 37 H 1.08999 * 110.71813 * 23.06581 * 13 11 9 38 38 H 1.08996 * 111.00688 * 82.57574 * 14 13 11 39 39 H 1.09003 * 110.99871 * 206.38986 * 14 13 11 40 40 H 1.08994 * 110.49934 * 278.45670 * 15 14 13 41 41 H 1.09001 * 110.33913 * 156.05893 * 15 14 13 42 42 H 0.97002 * 119.99890 * 180.02562 * 22 21 19 43 43 H 1.08994 * 109.47361 * 300.00413 * 27 2 1 44 44 H 1.08996 * 109.47060 * 179.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 1 3.1301 -2.8849 -0.0001 8 8 1.5633 -4.2320 0.0002 9 6 1.5301 -2.1637 1.2492 10 1 0.4401 -2.1637 1.2492 11 6 2.0407 -2.8846 2.4984 12 1 1.6633 -3.9072 2.5163 13 6 3.5838 -2.8909 2.5070 14 6 3.9239 -2.6711 4.0048 15 6 2.7909 -1.7050 4.4402 16 7 1.6004 -2.1681 3.7043 17 6 0.3202 -1.9633 4.0729 18 8 -0.5869 -2.3084 3.3389 19 6 0.0212 -1.3258 5.3562 20 1 0.8240 -0.9450 5.9701 21 6 -1.3064 -1.2046 5.7852 22 7 -2.2832 -1.5745 5.0000 23 14 -1.6808 -0.5142 7.4801 24 1 -1.9553 0.9413 7.3721 25 1 -2.8706 -1.2018 8.0430 26 1 -0.5143 -0.7330 8.3726 27 6 2.0401 -0.7212 1.2492 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 0.4401 -2.1637 -1.2493 34 1 1.8937 -2.6776 -2.1391 35 1 1.8483 -4.7503 -0.7648 36 1 3.9675 -3.8509 2.1613 37 1 3.9762 -2.0779 1.8961 38 1 3.8764 -3.6090 4.5580 39 1 4.9011 -2.2018 4.1186 40 1 3.0349 -0.6801 4.1607 41 1 2.6242 -1.7766 5.5150 42 1 -3.2027 -1.4901 5.2971 43 1 1.6767 -0.2074 2.1392 44 1 3.1300 -0.7216 1.2490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366846828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = -105.267867 kcal Electronic energy + Delta-G solvation = -24328.064141 eV Core-core repulsion = 21051.258085 eV Total energy + Delta-G solvation = -3276.806056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97726 -37.73565 -35.69884 -35.50371 -32.44724 -31.42860 -30.41185 -30.13823 -27.00537 -26.11815 -25.97852 -23.01402 -22.05110 -21.38716 -20.37968 -18.70094 -17.89537 -16.94312 -16.52080 -15.67718 -15.49304 -14.75202 -14.48293 -14.13058 -14.02082 -13.86222 -13.13480 -12.87875 -12.77212 -12.54789 -12.49230 -12.13406 -11.81117 -11.66468 -11.48802 -11.32960 -11.12817 -11.02271 -10.84264 -10.69726 -10.65501 -10.46982 -10.23377 -10.19826 -10.08953 -10.06535 -9.75766 -9.46577 -9.36245 -8.78829 -7.47687 -7.03659 -6.13636 -4.56995 3.15805 3.23338 3.26963 4.12821 4.48347 4.59984 4.66946 4.90848 4.98870 5.16892 5.21463 5.30465 5.37343 5.45698 5.47769 5.59644 5.69597 5.74982 5.80304 5.88596 5.95082 5.98538 6.00553 6.10690 6.16585 6.20777 6.23775 6.31841 6.35380 6.41998 6.53532 6.55990 6.66955 6.72804 6.77238 6.83349 6.98741 7.16380 7.49232 7.56694 7.96213 8.20382 8.52122 9.08381 9.62123 10.65285 10.86049 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.006210 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.997387 B = 4507.463297 C = 5091.168284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.153 4.153 6 C 0.112 3.888 7 H 0.048 0.952 8 O -0.559 6.559 9 C -0.088 4.088 10 H 0.102 0.898 11 C 0.157 3.843 12 H 0.062 0.938 13 C -0.132 4.132 14 C -0.135 4.135 15 C 0.118 3.882 16 N -0.639 5.639 17 C 0.574 3.426 18 O -0.569 6.569 19 C -0.541 4.541 20 H 0.067 0.933 21 C 0.088 3.912 22 N -0.767 5.767 23 Si 0.904 3.096 24 H -0.274 1.274 25 H -0.279 1.279 26 H -0.265 1.265 27 C -0.100 4.100 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.366 0.634 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.267 0.733 43 H 0.075 0.925 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.747 0.774 -9.044 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.190 4.190 6 C 0.053 3.947 7 H 0.065 0.935 8 O -0.363 6.363 9 C -0.107 4.107 10 H 0.120 0.880 11 C 0.052 3.948 12 H 0.080 0.920 13 C -0.170 4.170 14 C -0.173 4.173 15 C -0.007 4.007 16 N -0.378 5.378 17 C 0.380 3.620 18 O -0.451 6.451 19 C -0.578 4.578 20 H 0.085 0.915 21 C -0.131 4.131 22 N -0.396 5.396 23 Si 0.728 3.272 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.189 1.189 27 C -0.137 4.137 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.211 0.789 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.646 0.774 -8.871 13.880 hybrid contribution 0.163 0.226 0.308 0.415 sum 10.810 1.000 -8.564 13.827 Atomic orbital electron populations 1.21900 0.94826 1.02770 1.01043 1.21131 0.96515 0.98602 0.94835 0.91782 1.21488 0.99964 0.95160 0.97959 1.22304 1.02592 0.96372 0.97776 1.21888 0.96139 0.81559 0.95102 0.93450 1.86672 1.77685 1.23508 1.48408 1.21497 1.03760 0.93340 0.92143 0.88001 1.21083 0.91677 0.95961 0.86098 0.91966 1.22765 0.96227 1.01285 0.96691 1.22816 0.98200 1.00142 0.96168 1.21919 0.85603 0.95775 0.97396 1.48749 1.05625 1.60121 1.23328 1.17940 0.78078 0.79062 0.86890 1.90600 1.43382 1.56090 1.55044 1.20908 0.92573 1.40840 1.03506 0.91462 1.25688 0.96018 0.93605 0.97786 1.70025 0.99578 1.35338 1.34692 0.86426 0.78582 0.79232 0.82930 1.19915 1.20459 1.18904 1.21538 0.99198 0.95182 0.97815 0.92300 0.93783 0.91652 0.92281 0.92387 0.90709 0.92568 0.78896 0.91680 0.91126 0.91367 0.91439 0.93805 0.91393 0.92244 0.90613 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.50 37.16 0.32 -2.15 16 2 C -0.09 -1.36 3.19 -90.62 -0.29 -1.65 16 3 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.33 5.45 -26.73 -0.15 -1.47 16 5 C -0.15 -2.00 5.27 -26.73 -0.14 -2.14 16 6 C 0.11 1.68 2.66 -26.73 -0.07 1.61 16 7 H 0.05 0.64 7.04 -51.93 -0.37 0.27 16 8 O -0.56 -8.79 12.68 -35.23 -0.45 -9.23 16 9 C -0.09 -1.65 1.37 -90.62 -0.12 -1.77 16 10 H 0.10 2.42 5.04 -51.93 -0.26 2.15 16 11 C 0.16 3.13 2.54 -66.96 -0.17 2.96 16 12 H 0.06 1.43 7.74 -51.92 -0.40 1.03 16 13 C -0.13 -2.01 5.19 -24.90 -0.13 -2.14 16 14 C -0.14 -2.01 7.10 -24.46 -0.17 -2.18 16 15 C 0.12 2.20 6.61 -2.41 -0.02 2.18 16 16 N -0.64 -14.68 2.23 -164.52 -0.37 -15.05 16 17 C 0.57 16.41 7.59 -12.98 -0.10 16.31 16 18 O -0.57 -18.35 13.92 5.20 0.07 -18.27 16 19 C -0.54 -15.39 8.98 -35.63 -0.32 -15.71 16 20 H 0.07 1.77 6.60 -52.49 -0.35 1.43 16 21 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 22 N -0.77 -23.14 11.84 55.55 0.66 -22.48 16 23 Si 0.90 20.39 29.56 -169.99 -5.03 15.37 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.10 -1.68 4.31 -26.73 -0.12 -1.79 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.21 4.81 -51.93 -0.25 0.96 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.12 6.43 -51.93 -0.33 0.78 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.37 3.81 9.08 45.56 0.41 4.23 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.98 5.47 -51.93 -0.28 0.70 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.31 7.02 -51.93 -0.36 0.95 16 42 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 43 H 0.08 1.52 7.56 -51.93 -0.39 1.13 16 44 H 0.05 0.81 6.08 -51.93 -0.32 0.50 16 LS Contribution 328.40 15.07 4.95 4.95 Total: -1.00 -34.19 328.40 -8.00 -42.18 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.26 Total: 8.08 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.57 Total: -5.54 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.29 Total: -37.52 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.37 Total: -27.51 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.19 -8.00 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366846828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.084 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds