Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46825 * 2 1 4 4 C 1.52998 * 109.47043 * 240.00566 * 2 1 3 5 5 C 1.53007 * 109.46928 * 299.99707 * 4 2 1 6 6 C 1.52999 * 109.47071 * 299.99889 * 5 4 2 7 7 H 1.08996 * 109.47146 * 300.00102 * 6 5 4 8 8 O 1.42901 * 109.47218 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.46820 * 59.99966 * 6 5 4 10 10 H 1.09002 * 109.46912 * 60.00480 * 9 6 5 11 11 C 1.53000 * 109.46727 * 179.97438 * 9 6 5 12 12 H 1.09004 * 109.86978 * 178.95415 * 11 9 6 13 13 C 1.54328 * 110.01082 * 57.86302 * 11 9 6 14 14 C 1.55153 * 102.94190 * 218.31415 * 13 11 9 15 15 C 1.54697 * 101.67898 * 35.33086 * 14 13 11 16 16 N 1.47020 * 109.88615 * 299.97370 * 11 9 6 17 17 C 1.34782 * 125.64694 * 298.47269 * 16 11 9 18 18 O 1.21682 * 119.99724 * 354.91114 * 17 16 11 19 19 C 1.46375 * 119.99653 * 174.90266 * 17 16 11 20 20 H 1.08003 * 119.99720 * 0.02562 * 19 17 16 21 21 C 1.40049 * 119.99674 * 180.27854 * 19 17 16 22 22 N 1.30670 * 119.99967 * 359.73016 * 21 19 17 23 23 Si 1.86792 * 119.99881 * 179.72587 * 21 19 17 24 24 H 1.48509 * 109.47031 * 89.99887 * 23 21 19 25 25 H 1.48500 * 109.47324 * 210.00001 * 23 21 19 26 26 H 1.48508 * 109.47395 * 330.00245 * 23 21 19 27 27 C 1.52994 * 109.47278 * 120.00097 * 2 1 3 28 28 H 1.09000 * 109.46825 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46643 * 300.00056 * 1 2 3 30 30 H 1.08994 * 109.46989 * 60.00022 * 1 2 3 31 31 H 1.09004 * 109.47420 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47401 * 59.99172 * 4 2 1 33 33 H 1.08998 * 109.47157 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.47218 * 59.99947 * 5 4 2 35 35 H 0.96705 * 113.99365 * 60.00320 * 8 6 5 36 36 H 1.08997 * 110.72063 * 336.67592 * 13 11 9 37 37 H 1.09001 * 110.71870 * 99.77153 * 13 11 9 38 38 H 1.08999 * 111.00422 * 153.57344 * 14 13 11 39 39 H 1.09003 * 111.00556 * 277.43021 * 14 13 11 40 40 H 1.08995 * 110.39108 * 204.36466 * 15 14 13 41 41 H 1.08998 * 110.23245 * 82.10958 * 15 14 13 42 42 H 0.96999 * 119.99801 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.47239 * 300.00069 * 27 2 1 44 44 H 1.09004 * 109.47040 * 179.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0002 7 1 3.1301 -2.8849 -0.0003 8 8 1.5634 -4.2321 0.0001 9 6 1.5302 -2.1637 1.2491 10 1 0.4401 -2.1638 1.2492 11 6 2.0397 -2.8854 2.4983 12 1 1.6954 -2.3660 3.3926 13 6 3.5820 -2.9402 2.4843 14 6 3.8848 -4.3498 3.0575 15 6 2.7149 -5.1808 2.4796 16 7 1.5537 -4.2729 2.5074 17 6 0.2608 -4.6521 2.5417 18 8 -0.6154 -3.8163 2.6616 19 6 -0.0893 -6.0693 2.4344 20 1 0.6885 -6.8111 2.3282 21 6 -1.4331 -6.4628 2.4641 22 7 -2.3740 -5.5653 2.5928 23 14 -1.8802 -8.2706 2.3194 24 1 -1.9304 -8.8780 3.6737 25 1 -3.2087 -8.4015 1.6687 26 1 -0.8571 -8.9698 1.5010 27 6 2.0401 -0.7212 1.2492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.1301 -0.7208 -1.2496 32 1 1.6766 -0.2073 -2.1392 33 1 1.8937 -2.6776 -2.1391 34 1 0.4401 -2.1637 -1.2493 35 1 1.8484 -4.7503 -0.7650 36 1 3.9620 -2.8478 1.4669 37 1 4.0013 -2.1629 3.1231 38 1 4.8446 -4.7201 2.6973 39 1 3.8541 -4.3435 4.1470 40 1 2.5272 -6.0560 3.1015 41 1 2.9362 -5.4822 1.4558 42 1 -3.3046 -5.8379 2.6138 43 1 1.6768 -0.2075 2.1392 44 1 3.1301 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366846830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = -95.888538 kcal Electronic energy + Delta-G solvation = -24601.712250 eV Core-core repulsion = 21325.312912 eV Total energy + Delta-G solvation = -3276.399338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92978 -37.57372 -35.45234 -35.26790 -32.31218 -31.57497 -30.30951 -30.04256 -26.92987 -26.10879 -25.84183 -22.87450 -22.06994 -21.32826 -20.40495 -18.50947 -17.97498 -16.60618 -16.40288 -15.66046 -15.37405 -14.74393 -14.44855 -14.06691 -13.96743 -13.68402 -13.08655 -12.75441 -12.66480 -12.46661 -12.34062 -12.06888 -11.85186 -11.66825 -11.41036 -11.19855 -11.10364 -10.93341 -10.81181 -10.73227 -10.61144 -10.41062 -10.29241 -10.14410 -10.09432 -9.87259 -9.84402 -9.37860 -9.07009 -8.67642 -7.35287 -6.81104 -6.00572 -4.40821 3.22212 3.28786 3.32139 4.22244 4.62884 4.72708 4.84635 4.93781 4.97242 5.21185 5.24736 5.34521 5.41622 5.45089 5.50601 5.56616 5.70719 5.73584 5.79413 5.91688 6.01325 6.04554 6.07464 6.07826 6.14181 6.19937 6.21605 6.27132 6.30278 6.35036 6.49015 6.53799 6.61357 6.67663 6.70902 6.88182 6.94798 7.12875 7.61180 7.72155 8.35361 8.40078 8.69175 9.21972 9.82192 10.79708 11.04264 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.006607 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.394139 B = 4237.217630 C = 4843.529446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.155 4.155 6 C 0.118 3.882 7 H 0.042 0.958 8 O -0.522 6.522 9 C -0.092 4.092 10 H 0.098 0.902 11 C 0.156 3.844 12 H 0.051 0.949 13 C -0.131 4.131 14 C -0.137 4.137 15 C 0.127 3.873 16 N -0.617 5.617 17 C 0.592 3.408 18 O -0.583 6.583 19 C -0.530 4.530 20 H 0.064 0.936 21 C 0.088 3.912 22 N -0.773 5.773 23 Si 0.901 3.099 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.267 1.267 27 C -0.105 4.105 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.354 0.646 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.064 0.936 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.058 6.679 -5.982 15.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.193 4.193 6 C 0.059 3.941 7 H 0.059 0.941 8 O -0.324 6.324 9 C -0.111 4.111 10 H 0.116 0.884 11 C 0.050 3.950 12 H 0.069 0.931 13 C -0.168 4.168 14 C -0.176 4.176 15 C 0.002 3.998 16 N -0.355 5.355 17 C 0.398 3.602 18 O -0.466 6.466 19 C -0.568 4.568 20 H 0.082 0.918 21 C -0.131 4.131 22 N -0.403 5.403 23 Si 0.726 3.274 24 H -0.200 1.200 25 H -0.207 1.207 26 H -0.191 1.191 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.198 0.802 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.978 7.341 -5.324 14.239 hybrid contribution 0.118 -1.079 -0.745 1.316 sum 11.096 6.262 -6.069 14.113 Atomic orbital electron populations 1.21953 0.95036 1.03094 1.00894 1.21094 0.96314 0.98462 0.95004 0.91776 1.21483 0.99949 0.95583 0.97562 1.22365 1.02579 0.95910 0.98451 1.21670 0.95449 0.83202 0.93816 0.94081 1.87083 1.76816 1.21672 1.46831 1.21530 1.03490 0.92267 0.93819 0.88350 1.21030 0.91411 0.86791 0.95735 0.93133 1.22749 0.96179 0.97104 1.00805 1.22769 0.98419 0.95996 1.00384 1.21723 0.85648 0.93430 0.99014 1.48349 1.05463 1.02387 1.79314 1.17672 0.77661 0.89573 0.75256 1.90563 1.46301 1.54344 1.55351 1.20838 0.91967 0.91229 1.52719 0.91814 1.25674 0.96379 0.98038 0.92961 1.70034 1.00118 1.33598 1.36516 0.86493 0.78160 0.84028 0.78702 1.19999 1.20711 1.19085 1.21571 0.99914 0.95424 0.97443 0.91192 0.92822 0.93458 0.92421 0.92400 0.92666 0.90807 0.80184 0.91204 0.91831 0.91621 0.91691 0.92260 0.93306 0.92555 0.91723 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.50 37.16 0.32 -1.89 16 2 C -0.09 -1.16 3.19 -90.62 -0.29 -1.45 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.31 5.45 -26.73 -0.15 -1.45 16 5 C -0.16 -2.21 5.27 -26.73 -0.14 -2.35 16 6 C 0.12 1.91 2.63 -26.73 -0.07 1.84 16 7 H 0.04 0.61 5.99 -51.93 -0.31 0.30 16 8 O -0.52 -10.01 9.08 -35.23 -0.32 -10.33 16 9 C -0.09 -1.66 1.49 -90.62 -0.14 -1.80 16 10 H 0.10 2.29 5.29 -51.93 -0.27 2.01 16 11 C 0.16 3.04 2.63 -66.95 -0.18 2.87 16 12 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 13 C -0.13 -1.95 5.24 -24.90 -0.13 -2.08 16 14 C -0.14 -2.06 7.07 -24.70 -0.17 -2.24 16 15 C 0.13 2.42 5.96 -2.64 -0.02 2.40 16 16 N -0.62 -14.26 1.71 -164.80 -0.28 -14.54 16 17 C 0.59 17.17 6.63 -12.98 -0.09 17.08 16 18 O -0.58 -19.13 14.23 5.21 0.07 -19.05 16 19 C -0.53 -15.40 8.97 -35.63 -0.32 -15.72 16 20 H 0.06 1.73 6.79 -52.48 -0.36 1.38 16 21 C 0.09 2.52 5.50 -17.37 -0.10 2.43 16 22 N -0.77 -23.82 11.83 55.55 0.66 -23.17 16 23 Si 0.90 20.87 29.56 -169.99 -5.02 15.85 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 C -0.11 -1.51 4.53 -26.74 -0.12 -1.63 16 28 H 0.07 1.22 4.81 -51.93 -0.25 0.97 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 35 H 0.35 5.30 9.08 45.56 0.41 5.71 16 36 H 0.07 0.96 5.49 -51.93 -0.28 0.68 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.18 7.37 -51.93 -0.38 0.80 16 41 H 0.05 0.90 7.03 -51.93 -0.37 0.54 16 42 H 0.26 7.43 8.29 -40.82 -0.34 7.10 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.74 7.21 -51.93 -0.37 0.37 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -35.05 324.12 -7.90 -42.94 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.30 Total: 7.39 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.58 Total: -3.98 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.38 Total: -37.70 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.25 Total: -29.38 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.05 -7.90 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366846830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.945 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds