Wall clock time and date at job start Tue Mar 31 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.53000 * 109.47302 * 240.00391 * 2 1 3 5 5 C 1.52998 * 109.47302 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47179 * 59.99739 * 5 4 2 7 7 H 1.09001 * 109.47020 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47351 * 60.00325 * 6 5 4 9 9 C 1.53003 * 109.47090 * 299.99964 * 6 5 4 10 10 H 1.08993 * 109.47138 * 300.00273 * 9 6 5 11 11 C 1.53001 * 109.47090 * 179.97438 * 9 6 5 12 12 H 1.09002 * 109.99638 * 56.37319 * 11 9 6 13 13 C 1.54329 * 109.88009 * 295.28028 * 11 9 6 14 14 C 1.55164 * 102.93886 * 218.38945 * 13 11 9 15 15 C 1.54902 * 101.58193 * 35.50180 * 14 13 11 16 16 N 1.47022 * 109.88233 * 177.47072 * 11 9 6 17 17 C 1.34774 * 125.64622 * 298.31066 * 16 11 9 18 18 O 1.21680 * 120.00304 * 4.79698 * 17 16 11 19 19 C 1.46373 * 119.99555 * 184.79231 * 17 16 11 20 20 H 1.08003 * 120.00587 * 0.02562 * 19 17 16 21 21 C 1.40050 * 119.99709 * 180.02562 * 19 17 16 22 22 N 1.30669 * 120.00438 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99929 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47218 * 90.00052 * 23 21 19 25 25 H 1.48504 * 109.46971 * 209.99904 * 23 21 19 26 26 H 1.48496 * 109.47121 * 329.99525 * 23 21 19 27 27 C 1.53001 * 109.47179 * 120.00131 * 2 1 3 28 28 H 1.09002 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47402 * 299.99534 * 1 2 3 30 30 H 1.09000 * 109.47315 * 60.00272 * 1 2 3 31 31 H 1.08992 * 109.47674 * 59.99647 * 4 2 1 32 32 H 1.09002 * 109.47320 * 299.99720 * 4 2 1 33 33 H 1.09001 * 109.47413 * 299.99873 * 5 4 2 34 34 H 1.08996 * 109.47402 * 180.02562 * 5 4 2 35 35 H 0.96706 * 113.99995 * 59.99890 * 8 6 5 36 36 H 1.08992 * 110.72391 * 336.74905 * 13 11 9 37 37 H 1.09000 * 110.72185 * 99.85509 * 13 11 9 38 38 H 1.09000 * 111.00494 * 153.57925 * 14 13 11 39 39 H 1.08996 * 111.00431 * 277.42898 * 14 13 11 40 40 H 1.09004 * 110.36963 * 81.83093 * 15 14 13 41 41 H 1.08999 * 110.37195 * 204.15105 * 15 14 13 42 42 H 0.96997 * 120.00491 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.47010 * 60.00545 * 27 2 1 44 44 H 1.08999 * 109.47050 * 299.99952 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0806 -1.4415 -0.0004 7 1 5.1706 -1.4407 -0.0004 8 8 3.6048 -2.7890 -0.0001 9 6 3.5706 -0.7203 1.2489 10 1 3.9334 0.3075 1.2487 11 6 4.0806 -1.4415 2.4981 12 1 5.1686 -1.5030 2.4750 13 6 3.4762 -2.8598 2.5688 14 6 3.2004 -3.0448 4.0845 15 6 2.7843 -1.6123 4.5020 16 7 3.6460 -0.7212 3.7039 17 6 3.9807 0.5438 4.0265 18 8 4.6301 1.2184 3.2495 19 6 3.5629 1.1062 5.3117 20 1 2.9868 0.5073 6.0016 21 6 3.9103 2.4209 5.6468 22 7 4.6069 3.1457 4.8120 23 14 3.3778 3.1384 7.2872 24 1 4.4208 2.8661 8.3086 25 1 3.1914 4.6052 7.1488 26 1 2.0977 2.5144 7.7083 27 6 2.0400 -0.7213 1.2492 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6767 -0.2074 -2.1392 32 1 1.6768 -1.7489 -1.2494 33 1 3.9330 0.3072 -1.2498 34 1 3.9334 -1.2339 -2.1398 35 1 3.8902 -3.3070 -0.7652 36 1 2.5486 -2.9126 1.9988 37 1 4.1901 -3.6015 2.2107 38 1 2.3874 -3.7518 4.2502 39 1 4.1021 -3.3586 4.6102 40 1 1.7348 -1.4377 4.2647 41 1 2.9638 -1.4601 5.5663 42 1 4.8478 4.0561 5.0442 43 1 1.6767 -1.7490 1.2491 44 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366846831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:10 Heat of formation + Delta-G solvation = -106.883976 kcal Electronic energy + Delta-G solvation = -24211.067156 eV Core-core repulsion = 20934.191020 eV Total energy + Delta-G solvation = -3276.876136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87546 -37.71524 -35.48885 -35.30891 -32.47216 -31.61712 -30.83967 -30.12401 -27.04598 -26.01741 -25.80930 -22.91877 -21.81592 -20.91287 -20.46323 -19.22327 -18.16510 -16.58990 -16.46454 -15.64432 -15.48104 -14.96983 -14.50200 -14.21663 -13.72372 -13.64088 -13.18547 -13.00569 -12.72722 -12.58725 -12.34918 -12.09451 -11.85645 -11.54710 -11.45599 -11.33176 -11.23998 -10.98270 -10.95848 -10.81014 -10.63058 -10.41839 -10.16747 -10.15651 -10.04239 -10.00294 -9.60131 -9.52518 -9.33488 -8.81121 -7.52060 -7.05527 -6.15370 -4.59192 3.15443 3.22380 3.25664 4.11813 4.53129 4.60092 4.67749 4.93965 5.04888 5.06197 5.33956 5.38584 5.45208 5.48248 5.55495 5.69279 5.72911 5.84690 5.85137 5.90001 5.94830 6.03643 6.09256 6.10839 6.15304 6.18793 6.30838 6.34287 6.38121 6.51129 6.56674 6.62561 6.65696 6.75416 6.83259 6.87524 7.04608 7.09337 7.47753 7.55769 7.89922 8.19267 8.51150 9.06546 9.60163 10.62915 10.83106 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.005867 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.919873 B = 4771.080603 C = 5249.173497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.066 0.934 4 C -0.104 4.104 5 C -0.150 4.150 6 C 0.112 3.888 7 H 0.049 0.951 8 O -0.554 6.554 9 C -0.087 4.087 10 H 0.099 0.901 11 C 0.156 3.844 12 H 0.048 0.952 13 C -0.112 4.112 14 C -0.142 4.142 15 C 0.119 3.881 16 N -0.639 5.639 17 C 0.574 3.426 18 O -0.576 6.576 19 C -0.540 4.540 20 H 0.068 0.932 21 C 0.088 3.912 22 N -0.769 5.769 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.095 4.095 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.362 0.638 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.267 0.733 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.029 -10.578 -8.747 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.188 4.188 6 C 0.053 3.947 7 H 0.067 0.933 8 O -0.359 6.359 9 C -0.106 4.106 10 H 0.117 0.883 11 C 0.051 3.949 12 H 0.066 0.934 13 C -0.150 4.150 14 C -0.180 4.180 15 C -0.005 4.005 16 N -0.378 5.378 17 C 0.381 3.619 18 O -0.458 6.458 19 C -0.577 4.577 20 H 0.086 0.914 21 C -0.131 4.131 22 N -0.398 5.398 23 Si 0.729 3.271 24 H -0.198 1.198 25 H -0.205 1.205 26 H -0.189 1.189 27 C -0.133 4.133 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.207 0.793 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.827 -9.707 -8.616 13.848 hybrid contribution 0.063 0.270 0.308 0.414 sum -4.764 -9.438 -8.309 13.446 Atomic orbital electron populations 1.21785 0.95803 1.01226 1.01194 1.21154 0.94969 0.99777 0.95397 0.91586 1.21445 0.94732 1.00717 0.97210 1.22216 0.97049 1.01682 0.97826 1.21801 0.96192 0.81686 0.94998 0.93349 1.86675 1.77670 1.23410 1.48112 1.21573 0.96144 1.00632 0.92297 0.88268 1.21085 0.97030 0.90683 0.86092 0.93398 1.22676 1.01943 0.95647 0.94747 1.22864 1.00840 0.97079 0.97219 1.21863 0.93960 0.88268 0.96439 1.48712 1.53339 1.14200 1.21505 1.17933 0.79356 0.77124 0.87502 1.90573 1.43964 1.58273 1.53004 1.20923 1.36934 0.98229 1.01608 0.91406 1.25700 0.93252 0.96752 0.97421 1.70017 1.27874 1.08000 1.33886 0.86421 0.79697 0.78330 0.82612 1.19783 1.20502 1.18924 1.21517 0.94816 1.00134 0.96784 0.93060 0.92713 0.93399 0.93004 0.91694 0.91194 0.92454 0.79279 0.89775 0.91647 0.91564 0.91793 0.93829 0.91618 0.92223 0.91570 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 2 C -0.09 -1.43 2.72 -90.62 -0.25 -1.67 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.10 -1.32 5.06 -26.73 -0.14 -1.46 16 5 C -0.15 -1.92 5.64 -26.73 -0.15 -2.07 16 6 C 0.11 1.63 3.21 -26.73 -0.09 1.54 16 7 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 8 O -0.55 -6.87 8.84 -35.23 -0.31 -7.18 16 9 C -0.09 -1.62 1.92 -90.59 -0.17 -1.79 16 10 H 0.10 2.29 6.62 -51.93 -0.34 1.95 16 11 C 0.16 3.09 2.66 -66.95 -0.18 2.92 16 12 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 13 C -0.11 -1.79 4.52 -24.89 -0.11 -1.91 16 14 C -0.14 -2.21 7.08 -24.58 -0.17 -2.38 16 15 C 0.12 2.29 6.62 -2.53 -0.02 2.27 16 16 N -0.64 -14.75 2.44 -164.66 -0.40 -15.16 16 17 C 0.57 16.42 7.60 -12.99 -0.10 16.32 16 18 O -0.58 -18.38 13.85 5.21 0.07 -18.31 16 19 C -0.54 -15.39 9.00 -35.63 -0.32 -15.71 16 20 H 0.07 1.80 6.54 -52.48 -0.34 1.45 16 21 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 22 N -0.77 -23.09 11.83 55.55 0.66 -22.43 16 23 Si 0.90 20.37 29.56 -169.99 -5.02 15.35 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 C -0.10 -1.64 3.90 -26.70 -0.10 -1.75 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.80 7.68 -51.93 -0.40 0.41 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.36 3.00 9.08 45.56 0.41 3.42 16 36 H 0.08 1.33 4.66 -51.93 -0.24 1.08 16 37 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.29 6.97 -51.93 -0.36 0.93 16 42 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 43 H 0.07 1.09 5.51 -51.93 -0.29 0.80 16 44 H 0.06 1.30 7.70 -51.93 -0.40 0.90 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -33.14 331.00 -8.15 -41.29 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.57 Total: 6.32 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.55 Total: -4.86 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.26 Total: -37.59 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.24 Total: -25.50 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.14 -8.15 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366846831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.597 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds