Wall clock time and date at job start Tue Mar 31 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47089 * 2 1 4 4 C 1.53001 * 109.47102 * 240.00395 * 2 1 3 5 5 C 1.53001 * 109.47102 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47214 * 60.00174 * 5 4 2 7 7 H 1.08996 * 109.47255 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.47056 * 59.99993 * 6 5 4 9 9 C 1.53001 * 109.46944 * 299.99923 * 6 5 4 10 10 H 1.08992 * 109.47560 * 300.00276 * 9 6 5 11 11 C 1.52997 * 109.47254 * 179.97438 * 9 6 5 12 12 H 1.08996 * 110.00044 * 171.16973 * 11 9 6 13 13 C 1.54318 * 109.77482 * 292.32831 * 11 9 6 14 14 C 1.55157 * 102.86325 * 141.88329 * 13 11 9 15 15 C 1.54912 * 101.58186 * 324.30241 * 14 13 11 16 16 N 1.47020 * 109.88125 * 50.07382 * 11 9 6 17 17 C 1.34784 * 125.64655 * 61.67659 * 16 11 9 18 18 O 1.21683 * 119.99992 * 355.09692 * 17 16 11 19 19 C 1.46369 * 119.99927 * 175.09315 * 17 16 11 20 20 H 1.08005 * 120.00429 * 6.21202 * 19 17 16 21 21 C 1.40056 * 120.00116 * 186.20896 * 19 17 16 22 22 N 1.30668 * 119.99865 * 6.04745 * 21 19 17 23 23 Si 1.86802 * 120.00081 * 186.04906 * 21 19 17 24 24 H 1.48499 * 109.47059 * 265.00741 * 23 21 19 25 25 H 1.48502 * 109.46704 * 145.00779 * 23 21 19 26 26 H 1.48495 * 109.47023 * 25.00574 * 23 21 19 27 27 C 1.53000 * 109.47214 * 120.00569 * 2 1 3 28 28 H 1.09001 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47465 * 299.99619 * 1 2 3 30 30 H 1.09001 * 109.47265 * 59.99582 * 1 2 3 31 31 H 1.09001 * 109.47042 * 59.99886 * 4 2 1 32 32 H 1.09001 * 109.47275 * 300.00278 * 4 2 1 33 33 H 1.09004 * 109.47170 * 299.99754 * 5 4 2 34 34 H 1.09004 * 109.46960 * 180.02562 * 5 4 2 35 35 H 0.96701 * 113.99918 * 59.99965 * 8 6 5 36 36 H 1.09000 * 110.92120 * 23.46791 * 13 11 9 37 37 H 1.09001 * 110.73951 * 260.21477 * 13 11 9 38 38 H 1.09004 * 111.00270 * 206.23265 * 14 13 11 39 39 H 1.08999 * 111.00519 * 82.37501 * 14 13 11 40 40 H 1.09003 * 110.36882 * 278.17222 * 15 14 13 41 41 H 1.08995 * 110.45931 * 155.89769 * 15 14 13 42 42 H 0.96997 * 120.00195 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.46915 * 59.99874 * 27 2 1 44 44 H 1.09000 * 109.47182 * 300.00316 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7206 -1.2496 6 6 4.0806 -1.4416 -0.0005 7 1 5.1705 -1.4408 -0.0005 8 8 3.6047 -2.7890 -0.0003 9 6 3.5706 -0.7204 1.2488 10 1 3.9334 0.3073 1.2487 11 6 4.0805 -1.4417 2.4980 12 1 3.8561 -0.8520 3.3868 13 6 3.4178 -2.8312 2.6057 14 6 4.5716 -3.7242 3.1339 15 6 5.7969 -3.1068 2.4147 16 7 5.5312 -1.6568 2.3940 17 6 6.4642 -0.6886 2.3008 18 8 6.1249 0.4763 2.2084 19 6 7.8854 -1.0383 2.3109 20 1 8.1866 -2.0754 2.2917 21 6 8.8550 -0.0282 2.3454 22 7 8.4938 1.2195 2.4878 23 14 10.6645 -0.4646 2.1879 24 1 11.2618 -0.5948 3.5412 25 1 11.3682 0.6060 1.4370 26 1 10.8017 -1.7518 1.4604 27 6 2.0400 -0.7214 1.2492 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5139 -0.8899 31 1 1.6766 -0.2073 -2.1392 32 1 1.6766 -1.7488 -1.2494 33 1 3.9330 0.3072 -1.2498 34 1 3.9333 -1.2340 -2.1399 35 1 3.8901 -3.3070 -0.7654 36 1 3.0783 -3.1772 1.6295 37 1 2.5905 -2.8104 3.3151 38 1 4.4279 -4.7635 2.8383 39 1 4.6690 -3.6372 4.2160 40 1 5.8745 -3.4928 1.3983 41 1 6.7107 -3.3171 2.9703 42 1 9.1652 1.9190 2.5120 43 1 1.6767 -1.7490 1.2490 44 1 1.6767 -0.2077 2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366846833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:13 Heat of formation + Delta-G solvation = -103.205205 kcal Electronic energy + Delta-G solvation = -24308.626397 eV Core-core repulsion = 21031.909785 eV Total energy + Delta-G solvation = -3276.716612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92422 -37.58855 -35.52757 -35.20497 -32.49543 -31.67253 -30.96893 -30.06023 -27.01258 -26.03961 -25.71609 -22.87454 -21.77818 -20.91734 -20.54865 -19.19891 -18.22036 -16.50934 -16.43955 -15.77577 -15.48833 -15.10813 -14.26408 -14.20060 -13.72593 -13.63010 -13.10590 -13.09111 -12.85673 -12.56503 -12.29928 -12.01734 -11.78671 -11.78187 -11.43535 -11.31003 -11.22667 -11.02692 -10.95377 -10.76460 -10.59899 -10.41581 -10.27808 -10.19240 -10.08692 -10.05375 -9.75996 -9.35626 -9.08888 -8.81866 -7.53725 -7.04528 -6.19704 -4.60274 3.13398 3.21092 3.24843 4.10480 4.53922 4.60414 4.70638 4.93094 5.00032 5.12198 5.32827 5.40896 5.44425 5.53042 5.57116 5.72822 5.76474 5.82730 5.87302 5.88665 5.93167 5.99530 6.01520 6.15243 6.19236 6.22977 6.28207 6.35213 6.38771 6.50015 6.57084 6.58492 6.63037 6.70743 6.73245 6.85454 7.00984 7.23640 7.45961 7.55005 8.07871 8.17583 8.50568 9.04846 9.59502 10.60973 10.80917 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.005725 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.201092 B = 4889.698801 C = 5375.474346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.065 0.935 4 C -0.104 4.104 5 C -0.152 4.152 6 C 0.121 3.879 7 H 0.063 0.937 8 O -0.552 6.552 9 C -0.083 4.083 10 H 0.091 0.909 11 C 0.156 3.844 12 H 0.048 0.952 13 C -0.141 4.141 14 C -0.133 4.133 15 C 0.125 3.875 16 N -0.638 5.638 17 C 0.574 3.426 18 O -0.577 6.577 19 C -0.542 4.542 20 H 0.068 0.932 21 C 0.090 3.910 22 N -0.770 5.770 23 Si 0.904 3.096 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.264 1.264 27 C -0.103 4.103 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.358 0.642 36 H 0.118 0.882 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.268 0.732 43 H 0.070 0.930 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.110 -7.698 -5.258 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.190 4.190 6 C 0.062 3.938 7 H 0.081 0.919 8 O -0.358 6.358 9 C -0.102 4.102 10 H 0.109 0.891 11 C 0.052 3.948 12 H 0.066 0.934 13 C -0.178 4.178 14 C -0.171 4.171 15 C 0.000 4.000 16 N -0.377 5.377 17 C 0.380 3.620 18 O -0.460 6.460 19 C -0.579 4.579 20 H 0.086 0.914 21 C -0.130 4.130 22 N -0.399 5.399 23 Si 0.729 3.271 24 H -0.199 1.199 25 H -0.204 1.204 26 H -0.189 1.189 27 C -0.141 4.141 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.205 0.795 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.430 -6.567 -4.730 14.005 hybrid contribution 1.304 -0.300 -0.528 1.438 sum -10.126 -6.868 -5.258 13.317 Atomic orbital electron populations 1.21805 0.95797 1.01399 1.01090 1.21131 0.94785 0.99662 0.95563 0.91630 1.21448 0.95181 1.00627 0.96851 1.22258 0.96366 1.01910 0.98487 1.21678 0.97592 0.80864 0.93641 0.91879 1.86431 1.77806 1.23907 1.47645 1.21511 0.94260 1.00567 0.93906 0.89055 1.21087 0.83374 0.94956 0.95433 0.93412 1.23183 0.96562 0.94758 1.03283 1.22718 0.96327 0.98463 0.99568 1.21801 0.96796 0.83023 0.98383 1.48708 1.04164 1.05359 1.79421 1.17947 0.84969 0.82875 0.76160 1.90580 1.81746 1.18511 1.55125 1.20915 0.89140 0.93642 1.54199 0.91403 1.25688 1.00275 0.94440 0.92586 1.69995 1.34441 1.00168 1.35275 0.86419 0.82911 0.79037 0.78779 1.19873 1.20425 1.18861 1.21598 0.95339 1.00698 0.96446 0.92897 0.92950 0.93257 0.93048 0.91656 0.91277 0.92472 0.79524 0.86437 0.92882 0.91649 0.92214 0.93739 0.91961 0.92162 0.91142 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.09 -1.24 2.72 -90.62 -0.25 -1.49 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.10 -1.32 5.06 -26.73 -0.14 -1.45 16 5 C -0.15 -2.22 5.64 -26.73 -0.15 -2.37 16 6 C 0.12 2.02 2.93 -26.73 -0.08 1.94 16 7 H 0.06 1.31 7.04 -51.93 -0.37 0.94 16 8 O -0.55 -7.68 8.40 -35.23 -0.30 -7.98 16 9 C -0.08 -1.53 1.83 -90.59 -0.17 -1.69 16 10 H 0.09 2.06 7.05 -51.93 -0.37 1.69 16 11 C 0.16 3.11 2.81 -66.96 -0.19 2.92 16 12 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 13 C -0.14 -2.24 4.88 -24.90 -0.12 -2.36 16 14 C -0.13 -2.08 7.08 -24.58 -0.17 -2.25 16 15 C 0.12 2.37 6.58 -2.53 -0.02 2.36 16 16 N -0.64 -14.59 2.04 -164.67 -0.34 -14.93 16 17 C 0.57 16.27 7.16 -12.99 -0.09 16.18 16 18 O -0.58 -18.33 14.13 5.20 0.07 -18.26 16 19 C -0.54 -15.33 8.96 -35.63 -0.32 -15.65 16 20 H 0.07 1.79 6.63 -52.48 -0.35 1.44 16 21 C 0.09 2.50 5.49 -17.36 -0.10 2.40 16 22 N -0.77 -23.03 11.89 55.55 0.66 -22.37 16 23 Si 0.90 20.22 29.56 -169.99 -5.03 15.20 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 C -0.10 -1.54 3.99 -26.70 -0.11 -1.64 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.80 7.68 -51.93 -0.40 0.41 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.36 3.78 9.08 55.04 0.50 4.28 16 36 H 0.12 1.81 3.83 -43.08 -0.17 1.65 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.23 7.05 -51.93 -0.37 0.87 16 42 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 43 H 0.07 1.02 6.25 -51.93 -0.32 0.69 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 330.44 15.07 4.98 4.98 Total: -1.00 -32.72 330.44 -7.96 -40.68 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.46 Total: 7.04 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -1.55 Total: -4.36 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.32 Total: -37.30 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.22 Total: -26.23 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.72 -7.96 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366846833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.524 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds