Wall clock time and date at job start Tue Mar 31 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 110.33136 * 2 1 4 4 C 1.54474 * 110.37293 * 237.62573 * 2 1 3 5 5 C 1.54688 * 104.07995 * 217.10062 * 4 2 1 6 6 H 1.09000 * 110.61230 * 241.48959 * 5 4 2 7 7 C 1.53004 * 110.48894 * 118.72858 * 5 4 2 8 8 C 1.54479 * 103.97868 * 0.13739 * 5 4 2 9 9 H 1.08992 * 110.37094 * 264.96741 * 8 5 4 10 10 C 1.50698 * 110.36850 * 142.73655 * 8 5 4 11 11 O 1.21292 * 120.00025 * 246.54773 * 10 8 5 12 12 N 1.34777 * 119.99759 * 66.55183 * 10 8 5 13 13 C 1.37104 * 119.99525 * 179.97438 * 12 10 8 14 14 H 1.07994 * 119.99762 * 137.43606 * 13 12 10 15 15 C 1.38950 * 120.00372 * 317.43065 * 13 12 10 16 16 N 1.31405 * 119.99948 * 159.92490 * 15 13 12 17 17 Si 1.86800 * 119.99838 * 339.93060 * 15 13 12 18 18 H 1.48504 * 109.47156 * 93.48570 * 17 15 13 19 19 H 1.48504 * 109.47142 * 213.48531 * 17 15 13 20 20 H 1.48498 * 109.47225 * 333.48880 * 17 15 13 21 21 C 1.46493 * 120.00383 * 359.97438 * 12 10 8 22 22 C 1.54269 * 110.03623 * 126.54088 * 21 12 10 23 23 C 1.54962 * 104.16039 * 95.75439 * 22 21 12 24 24 C 1.54893 * 102.77789 * 37.88698 * 23 22 21 25 25 C 1.53874 * 110.03291 * 243.75910 * 21 12 10 26 26 O 1.44423 * 104.89992 * 23.85122 * 8 5 4 27 27 H 1.08998 * 109.47351 * 299.20628 * 1 2 3 28 28 H 1.08997 * 109.47028 * 59.20657 * 1 2 3 29 29 H 1.09006 * 109.47233 * 179.20383 * 1 2 3 30 30 H 1.08998 * 110.51400 * 335.83839 * 4 2 1 31 31 H 1.09005 * 110.50765 * 98.54679 * 4 2 1 32 32 H 1.08998 * 109.46619 * 305.47138 * 7 5 4 33 33 H 1.08997 * 109.47008 * 65.46728 * 7 5 4 34 34 H 1.08996 * 109.46827 * 185.47328 * 7 5 4 35 35 H 0.97000 * 120.00137 * 180.02562 * 16 15 13 36 36 H 1.08999 * 110.01529 * 5.14492 * 21 12 10 37 37 H 1.08997 * 110.48827 * 214.40063 * 22 21 12 38 38 H 1.09004 * 110.48224 * 337.04652 * 22 21 12 39 39 H 1.09003 * 110.71593 * 279.57612 * 23 22 21 40 40 H 1.08994 * 110.92367 * 156.30145 * 23 22 21 41 41 H 1.08998 * 110.48851 * 203.40513 * 24 23 22 42 42 H 1.09001 * 110.59786 * 80.81547 * 24 23 22 43 43 H 1.09004 * 110.03241 * 359.94779 * 25 21 12 44 44 H 1.09002 * 110.03378 * 121.33114 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0677 -0.7754 -1.2230 5 6 3.3206 -1.5056 -0.6845 6 1 4.2142 -1.1764 -1.2148 7 6 3.1509 -3.0213 -0.8067 8 6 3.3873 -1.0863 0.8008 9 1 4.0527 -0.2320 0.9243 10 6 3.8529 -2.2401 1.6511 11 8 3.0974 -2.7448 2.4547 12 7 5.1087 -2.7110 1.5187 13 6 5.5324 -3.7603 2.2927 14 1 6.1186 -4.5536 1.8529 15 6 5.2078 -3.8032 3.6431 16 7 5.2523 -4.9440 4.2937 17 14 4.7081 -2.2390 4.5336 18 1 3.2290 -2.1085 4.5128 19 1 5.1800 -2.2980 5.9405 20 1 5.3180 -1.0670 3.8557 21 6 6.0210 -2.1017 0.5479 22 6 7.3346 -1.6891 1.2437 23 6 8.2910 -2.8807 0.9850 24 6 7.9302 -3.3019 -0.4612 25 6 6.3993 -3.1269 -0.5354 26 8 2.0327 -0.7225 1.1451 27 1 -0.3634 0.5014 0.8970 28 1 -0.3633 0.5261 -0.8828 29 1 -0.3634 -1.0276 -0.0143 30 1 1.3276 -1.4936 -1.5756 31 1 2.3429 -0.0861 -2.0214 32 1 2.2285 -3.3246 -0.3115 33 1 3.1059 -3.2981 -1.8600 34 1 3.9975 -3.5207 -0.3356 35 1 5.0254 -4.9740 5.2363 36 1 5.5515 -1.2310 0.0902 37 1 7.7323 -0.7774 0.7981 38 1 7.1735 -1.5535 2.3132 39 1 8.0932 -3.6928 1.6846 40 1 9.3323 -2.5646 1.0470 41 1 8.2041 -4.3424 -0.6351 42 1 8.4238 -2.6525 -1.1842 43 1 5.9048 -4.0781 -0.3383 44 1 6.1126 -2.7540 -1.5187 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407958669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:27 Heat of formation + Delta-G solvation = -93.145261 kcal Electronic energy + Delta-G solvation = -24767.623184 eV Core-core repulsion = 21491.342804 eV Total energy + Delta-G solvation = -3276.280380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87295 -39.91940 -38.45725 -35.28045 -34.69958 -33.70311 -32.90664 -29.48289 -28.97646 -28.28157 -27.79444 -25.68539 -22.67660 -22.11865 -21.60339 -21.10920 -20.79379 -18.75708 -17.89763 -17.49236 -17.14191 -16.79049 -16.25913 -15.75159 -15.53020 -15.48022 -15.00117 -14.77989 -14.39568 -14.12587 -13.92666 -13.69777 -13.47962 -13.31164 -13.14833 -13.00559 -12.71136 -12.36280 -12.29091 -12.17981 -11.97901 -11.93296 -11.75792 -11.73125 -11.68431 -11.60614 -11.35656 -11.15888 -10.79021 -10.69560 -10.19817 -9.48747 -8.39773 -6.08123 1.14804 1.26703 1.47955 1.93086 2.36259 2.43162 3.04610 3.20388 3.48221 3.65333 3.77409 3.85708 3.93952 4.02542 4.18523 4.25942 4.27686 4.40461 4.44139 4.56122 4.66608 4.75142 4.76563 4.78373 4.82684 4.84733 4.93204 4.97605 5.02338 5.08113 5.12334 5.22252 5.25196 5.26669 5.29284 5.40162 5.50322 5.53864 5.73343 5.74935 5.89016 6.03925 6.83494 6.98154 7.40242 7.93961 8.69632 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.008932 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.635950 B = 3134.166472 C = 4231.482294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 H 0.088 0.912 4 C -0.134 4.134 5 C -0.103 4.103 6 H 0.125 0.875 7 C -0.152 4.152 8 C 0.060 3.940 9 H 0.097 0.903 10 C 0.452 3.548 11 O -0.586 6.586 12 N -0.461 5.461 13 C -0.309 4.309 14 H 0.078 0.922 15 C 0.046 3.954 16 N -0.912 5.912 17 Si 0.940 3.060 18 H -0.290 1.290 19 H -0.306 1.306 20 H -0.262 1.262 21 C 0.114 3.886 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.110 4.110 25 C -0.125 4.125 26 O -0.387 6.387 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.022 0.978 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.268 0.732 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 12.721 -17.385 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.007 4.007 3 H 0.106 0.894 4 C -0.172 4.172 5 C -0.121 4.121 6 H 0.143 0.857 7 C -0.210 4.210 8 C -0.001 4.001 9 H 0.115 0.885 10 C 0.243 3.757 11 O -0.470 6.470 12 N -0.184 5.184 13 C -0.436 4.436 14 H 0.095 0.905 15 C -0.157 4.157 16 N -0.551 5.551 17 Si 0.771 3.229 18 H -0.218 1.218 19 H -0.235 1.235 20 H -0.186 1.186 21 C 0.012 3.988 22 C -0.165 4.165 23 C -0.158 4.158 24 C -0.148 4.148 25 C -0.163 4.163 26 O -0.307 6.307 27 H 0.071 0.929 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.539 12.322 -16.650 20.720 hybrid contribution -0.420 -0.082 1.542 1.600 sum 0.118 12.240 -15.108 19.444 Atomic orbital electron populations 1.21813 0.92443 1.02316 1.03358 1.23424 0.96334 0.96068 0.84842 0.89384 1.23153 0.96164 0.99797 0.98053 1.22602 1.01340 0.96591 0.91600 0.85746 1.22008 1.01362 0.95172 1.02423 1.23021 0.86027 0.95433 0.95614 0.88548 1.20858 0.82461 0.86952 0.85477 1.90540 1.55316 1.61751 1.39413 1.43880 1.08367 1.30483 1.35711 1.18496 1.35128 1.00270 0.89708 0.90464 1.25756 0.94153 0.97859 0.97911 1.69827 1.48461 1.26105 1.10662 0.85934 0.78074 0.82280 0.76583 1.21789 1.23500 1.18610 1.22292 0.90889 0.96038 0.89623 1.22633 0.94995 0.99200 0.99653 1.22449 0.98672 0.97517 0.97201 1.22274 0.94796 1.01286 0.96415 1.22518 0.96913 0.98558 0.98303 1.89279 1.26332 1.75033 1.40025 0.92854 0.87730 0.93456 0.90326 0.86405 0.95859 0.89556 0.92415 0.92305 0.87961 0.88185 0.94405 0.94162 0.90479 0.92469 0.88847 0.93650 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.52 71.98 0.69 -2.47 16 2 C 0.05 1.27 3.92 31.09 0.12 1.40 16 3 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.13 -2.73 6.28 31.67 0.20 -2.53 16 5 C -0.10 -2.69 2.67 -9.71 -0.03 -2.71 16 6 H 0.12 2.31 6.88 -2.39 -0.02 2.30 16 7 C -0.15 -4.81 7.94 71.98 0.57 -4.24 16 8 C 0.06 2.21 2.66 30.35 0.08 2.29 16 9 H 0.10 3.07 7.50 -2.39 -0.02 3.05 16 10 C 0.45 22.15 3.61 87.66 0.32 22.47 16 11 O -0.59 -35.91 12.08 15.30 0.18 -35.73 16 12 N -0.46 -21.30 1.23 -609.39 -0.75 -22.05 16 13 C -0.31 -17.30 7.36 84.04 0.62 -16.69 16 14 H 0.08 4.57 7.02 -2.91 -0.02 4.55 16 15 C 0.05 2.86 4.82 84.93 0.41 3.27 16 16 N -0.91 -59.03 13.96 21.66 0.30 -58.73 16 17 Si 0.94 53.44 24.92 68.60 1.71 55.15 16 18 H -0.29 -18.25 6.26 99.48 0.62 -17.63 16 19 H -0.31 -16.89 7.11 99.48 0.71 -16.18 16 20 H -0.26 -13.69 7.11 99.48 0.71 -12.99 16 21 C 0.11 3.78 2.41 45.72 0.11 3.89 16 22 C -0.13 -4.03 6.05 31.70 0.19 -3.84 16 23 C -0.12 -3.71 6.56 31.91 0.21 -3.50 16 24 C -0.11 -2.77 6.83 31.67 0.22 -2.55 16 25 C -0.12 -3.53 5.06 31.32 0.16 -3.37 16 26 O -0.39 -15.41 10.60 -130.61 -1.39 -16.79 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.20 8.12 -2.38 -0.02 1.18 16 30 H 0.08 1.62 7.46 -2.39 -0.02 1.61 16 31 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.15 3.76 -2.39 -0.01 2.14 16 35 H 0.27 16.63 8.31 -92.71 -0.77 15.86 16 36 H 0.10 2.71 4.39 -2.39 -0.01 2.70 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.04 1.49 7.86 -2.38 -0.02 1.47 16 39 H 0.04 1.59 6.80 -2.39 -0.02 1.57 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.62 6.36 -2.38 -0.02 1.61 16 44 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -82.21 322.98 4.82 -77.39 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.89 Total: 9.35 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 3.86 Total: -8.59 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -0.45 Total: -80.78 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -1.20 Total: -52.52 kcal Atomic # 14 Polarization: 53.44 SS G_CDS: 1.71 Total: 55.15 kcal Total: -82.21 4.82 -77.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407958669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.756 kcal (2) G-P(sol) polarization free energy of solvation -82.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds