Wall clock time and date at job start Tue Mar 31 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.82510 * 2 1 4 4 C 1.54391 * 109.82682 * 239.02616 * 2 1 3 5 5 C 1.55305 * 102.24860 * 219.12924 * 4 2 1 6 6 H 1.09003 * 111.12622 * 276.21277 * 5 4 2 7 7 C 1.52998 * 111.16166 * 152.06772 * 5 4 2 8 8 C 1.54950 * 100.94337 * 34.13151 * 5 4 2 9 9 H 1.09003 * 110.39131 * 82.51193 * 8 5 4 10 10 C 1.50697 * 110.31022 * 204.63883 * 8 5 4 11 11 O 1.21295 * 120.00288 * 94.53571 * 10 8 5 12 12 N 1.34781 * 120.00324 * 274.53971 * 10 8 5 13 13 C 1.37105 * 119.99664 * 5.28489 * 12 10 8 14 14 H 1.08001 * 119.99484 * 121.36085 * 13 12 10 15 15 C 1.38952 * 120.00044 * 301.36367 * 13 12 10 16 16 N 1.31410 * 119.99801 * 342.82484 * 15 13 12 17 17 Si 1.86800 * 119.99849 * 162.82890 * 15 13 12 18 18 H 1.48499 * 109.46912 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47150 * 119.99554 * 17 15 13 20 20 H 1.48504 * 109.46991 * 239.99929 * 17 15 13 21 21 C 1.46494 * 120.00362 * 185.29245 * 12 10 8 22 22 C 1.54263 * 110.03184 * 237.17548 * 21 12 10 23 23 C 1.54893 * 104.19747 * 217.10311 * 22 21 12 24 24 C 1.54890 * 102.74625 * 37.93967 * 23 22 21 25 25 C 1.53871 * 110.03619 * 120.00560 * 21 12 10 26 26 O 1.43230 * 109.83199 * 120.89055 * 2 1 3 27 27 H 1.08997 * 109.47262 * 300.56562 * 1 2 3 28 28 H 1.09007 * 109.47072 * 60.56521 * 1 2 3 29 29 H 1.08994 * 109.47614 * 180.56340 * 1 2 3 30 30 H 1.08994 * 110.84651 * 337.31293 * 4 2 1 31 31 H 1.08997 * 110.84930 * 100.94412 * 4 2 1 32 32 H 1.08997 * 109.47206 * 300.99547 * 7 5 4 33 33 H 1.08994 * 109.47461 * 60.99529 * 7 5 4 34 34 H 1.09005 * 109.47292 * 180.99963 * 7 5 4 35 35 H 0.97006 * 119.99669 * 185.06101 * 16 15 13 36 36 H 1.09003 * 110.01629 * 358.61158 * 21 12 10 37 37 H 1.09009 * 110.48664 * 335.77923 * 22 21 12 38 38 H 1.09003 * 110.49185 * 98.42147 * 22 21 12 39 39 H 1.09000 * 110.75584 * 279.62683 * 23 22 21 40 40 H 1.09000 * 110.91397 * 156.32653 * 23 22 21 41 41 H 1.08997 * 110.48802 * 203.38104 * 24 23 22 42 42 H 1.08998 * 110.60070 * 80.79471 * 24 23 22 43 43 H 1.09005 * 110.03104 * 238.57003 * 25 21 12 44 44 H 1.09002 * 110.03280 * 359.95044 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0536 -0.7475 -1.2453 5 6 3.2729 -1.5227 -0.6757 6 1 4.1620 -0.8926 -0.6501 7 6 3.5324 -2.8044 -1.4698 8 6 2.7747 -1.8439 0.7559 9 1 2.1404 -2.7303 0.7473 10 6 3.9447 -2.0478 1.6835 11 8 4.3604 -1.1222 2.3480 12 7 4.5293 -3.2588 1.7747 13 6 4.1315 -4.2762 0.9462 14 1 4.8472 -4.7497 0.2905 15 6 2.8075 -4.6980 0.9502 16 7 2.0197 -4.3801 1.9527 17 14 2.1477 -5.7170 -0.4695 18 1 3.2275 -5.9367 -1.4650 19 1 1.6707 -7.0272 0.0413 20 1 1.0202 -4.9966 -1.1139 21 6 5.5897 -3.4880 2.7591 22 6 6.8716 -3.9738 2.0515 23 6 7.4739 -5.0139 3.0286 24 6 6.2174 -5.7319 3.5807 25 6 5.1738 -4.6058 3.7313 26 8 2.0159 -0.6917 1.1562 27 1 -0.3633 0.5226 0.8848 28 1 -0.3633 0.5051 -0.8951 29 1 -0.3634 -1.0275 0.0101 30 1 1.3011 -1.4361 -1.6292 31 1 2.3671 -0.0441 -2.0166 32 1 2.6484 -3.4408 -1.4315 33 1 3.7531 -2.5511 -2.5067 34 1 4.3808 -3.3346 -1.0369 35 1 1.1178 -4.7350 1.9922 36 1 5.7919 -2.5697 3.3104 37 1 6.6269 -4.4428 1.0984 38 1 7.5632 -3.1444 1.9032 39 1 8.0199 -4.5187 3.8315 40 1 8.1191 -5.7159 2.5003 41 1 6.4315 -6.1855 4.5484 42 1 5.8660 -6.4859 2.8764 43 1 5.1749 -4.2301 4.7546 44 1 4.1825 -4.9772 3.4713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407958671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:30 Heat of formation + Delta-G solvation = -85.310099 kcal Electronic energy + Delta-G solvation = -24628.838560 eV Core-core repulsion = 21352.897938 eV Total energy + Delta-G solvation = -3275.940622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.66089 -38.20949 -36.31083 -34.38212 -32.66589 -31.60188 -31.22891 -27.89578 -27.36753 -26.48684 -25.71290 -24.31496 -20.93893 -20.45516 -20.06211 -19.25910 -19.06033 -17.19855 -15.96147 -15.64197 -15.25617 -14.68751 -14.42134 -14.26733 -13.84206 -13.62446 -13.41369 -13.03258 -12.64027 -12.48786 -12.36260 -11.95730 -11.87757 -11.59596 -11.50631 -11.28877 -11.02068 -10.89012 -10.72729 -10.68871 -10.46145 -10.44053 -10.41747 -10.27911 -9.98097 -9.93219 -9.84481 -9.57505 -9.21041 -8.66731 -7.84571 -7.20010 -6.44042 -4.28292 3.02563 3.14448 3.16223 3.84597 4.06104 4.47215 4.80420 4.94881 5.08786 5.20732 5.37258 5.42263 5.51399 5.64349 5.68754 5.79382 5.85047 5.97662 6.05763 6.17848 6.21671 6.23490 6.24600 6.29148 6.35539 6.35954 6.43892 6.50672 6.50977 6.55904 6.59276 6.64445 6.75222 6.80059 7.00148 7.02980 7.12759 7.15112 7.37778 7.42515 7.87923 8.06819 8.59297 8.89327 9.60581 10.03615 10.58675 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.007931 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.028036 B = 3529.721454 C = 4240.109368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.075 3.925 3 H 0.069 0.931 4 C -0.148 4.148 5 C -0.105 4.105 6 H 0.076 0.924 7 C -0.140 4.140 8 C 0.072 3.928 9 H 0.128 0.872 10 C 0.521 3.479 11 O -0.596 6.596 12 N -0.447 5.447 13 C -0.334 4.334 14 H 0.084 0.916 15 C 0.052 3.948 16 N -0.850 5.850 17 Si 0.895 3.105 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.276 1.276 21 C 0.136 3.864 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.127 4.127 26 O -0.361 6.361 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.273 0.727 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -0.120 -5.331 5.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.087 0.913 4 C -0.186 4.186 5 C -0.124 4.124 6 H 0.094 0.906 7 C -0.197 4.197 8 C 0.012 3.988 9 H 0.145 0.855 10 C 0.310 3.690 11 O -0.480 6.480 12 N -0.169 5.169 13 C -0.462 4.462 14 H 0.101 0.899 15 C -0.155 4.155 16 N -0.485 5.485 17 Si 0.722 3.278 18 H -0.185 1.185 19 H -0.210 1.210 20 H -0.202 1.202 21 C 0.032 3.968 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.153 4.153 25 C -0.165 4.165 26 O -0.280 6.280 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.538 0.424 -4.731 4.993 hybrid contribution -0.592 -0.705 -0.781 1.207 sum 0.946 -0.281 -5.511 5.599 Atomic orbital electron populations 1.22122 0.95729 1.02372 1.01395 1.22593 0.93713 0.96110 0.85880 0.91269 1.23264 0.98238 0.99356 0.97735 1.22611 0.97462 0.97451 0.94866 0.90594 1.21973 1.03743 0.96252 0.97729 1.23431 0.93421 0.90642 0.91281 0.85487 1.20244 0.83657 0.82233 0.82889 1.90498 1.66323 1.42325 1.48867 1.43238 1.33523 1.08257 1.31886 1.19033 0.93560 1.15949 1.17666 0.89852 1.25639 0.97626 0.95642 0.96573 1.69947 1.08949 1.41797 1.27813 0.86462 0.79673 0.79521 0.82194 1.18548 1.21012 1.20169 1.21549 0.87720 0.97433 0.90073 1.22637 0.96504 0.97769 0.99663 1.22418 0.97149 0.97825 0.98484 1.22257 0.95384 0.98160 0.99543 1.22407 1.01238 0.95362 0.97496 1.88463 1.69834 1.41143 1.28572 0.92275 0.92250 0.92278 0.90745 0.90800 0.93313 0.94080 0.88924 0.91686 0.90672 0.90491 0.92966 0.92436 0.92530 0.93196 0.91717 0.93654 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.44 37.16 0.35 -2.12 16 2 C 0.08 1.38 4.16 -26.00 -0.11 1.27 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 4 C -0.15 -2.47 6.03 -24.78 -0.15 -2.62 16 5 C -0.10 -2.06 3.09 -88.37 -0.27 -2.34 16 6 H 0.08 1.53 8.05 -51.93 -0.42 1.11 16 7 C -0.14 -2.57 7.47 37.16 0.28 -2.29 16 8 C 0.07 1.72 2.63 -26.85 -0.07 1.65 16 9 H 0.13 3.20 3.96 -51.93 -0.21 2.99 16 10 C 0.52 13.72 6.52 -10.98 -0.07 13.65 16 11 O -0.60 -17.38 16.03 -12.74 -0.20 -17.59 16 12 N -0.45 -10.84 2.30 -106.55 -0.24 -11.09 16 13 C -0.33 -7.74 4.31 -14.93 -0.06 -7.80 16 14 H 0.08 1.88 6.34 -52.49 -0.33 1.55 16 15 C 0.05 1.21 3.01 -17.47 -0.05 1.16 16 16 N -0.85 -21.58 11.59 55.50 0.64 -20.93 16 17 Si 0.89 18.37 26.07 -169.99 -4.43 13.93 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 C 0.14 3.01 3.29 -66.82 -0.22 2.79 16 22 C -0.13 -2.36 6.41 -25.07 -0.16 -2.52 16 23 C -0.12 -1.90 6.91 -24.74 -0.17 -2.08 16 24 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 25 C -0.13 -2.62 6.28 -25.61 -0.16 -2.78 16 26 O -0.36 -8.70 10.35 -53.52 -0.55 -9.26 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.19 7.74 -51.93 -0.40 0.79 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.92 4.53 -51.93 -0.24 0.69 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.81 5.44 -51.93 -0.28 1.53 16 35 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 36 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 37 H 0.08 1.47 6.40 -51.92 -0.33 1.14 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 2.28 7.17 -51.93 -0.37 1.91 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -28.50 326.63 -8.06 -36.56 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.15 Total: 9.63 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -1.05 Total: -6.18 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.40 Total: -32.02 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.76 Total: -26.84 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.43 Total: 13.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.50 -8.06 -36.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407958671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.751 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds