Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.41959 * 2 1 4 4 C 1.54474 * 110.37242 * 237.68859 * 2 1 3 5 5 C 1.54512 * 104.06377 * 217.19108 * 4 2 1 6 6 H 1.09000 * 110.51203 * 118.63832 * 5 4 2 7 7 C 1.52997 * 110.51050 * 241.35715 * 5 4 2 8 8 C 1.54480 * 104.05792 * 359.97438 * 5 4 2 9 9 H 1.08999 * 110.46853 * 265.09654 * 8 5 4 10 10 C 1.50702 * 110.37090 * 142.81178 * 8 5 4 11 11 O 1.21298 * 119.99873 * 264.05242 * 10 8 5 12 12 N 1.34776 * 120.00027 * 84.05002 * 10 8 5 13 13 C 1.37096 * 120.00092 * 355.89373 * 12 10 8 14 14 H 1.08005 * 119.99726 * 236.92336 * 13 12 10 15 15 C 1.38949 * 119.99642 * 56.65043 * 13 12 10 16 16 N 1.31412 * 119.99859 * 194.25672 * 15 13 12 17 17 Si 1.86800 * 120.00275 * 14.25412 * 15 13 12 18 18 H 1.48493 * 109.47069 * 3.76258 * 17 15 13 19 19 H 1.48504 * 109.47169 * 123.75902 * 17 15 13 20 20 H 1.48501 * 109.47304 * 243.75882 * 17 15 13 21 21 C 1.46500 * 119.99891 * 175.89822 * 12 10 8 22 22 C 1.54264 * 110.03363 * 237.90836 * 21 12 10 23 23 C 1.54968 * 104.16057 * 217.13932 * 22 21 12 24 24 C 1.54880 * 102.78020 * 37.88312 * 23 22 21 25 25 C 1.53874 * 110.03455 * 120.68921 * 21 12 10 26 26 O 1.44419 * 110.37067 * 122.30698 * 2 1 3 27 27 H 1.08995 * 109.47528 * 299.14768 * 1 2 3 28 28 H 1.09007 * 109.46883 * 59.14737 * 1 2 3 29 29 H 1.09002 * 109.47243 * 179.14327 * 1 2 3 30 30 H 1.09002 * 110.51415 * 335.83665 * 4 2 1 31 31 H 1.08996 * 110.51380 * 98.54605 * 4 2 1 32 32 H 1.09002 * 109.46844 * 180.48227 * 7 5 4 33 33 H 1.08997 * 109.46859 * 300.47604 * 7 5 4 34 34 H 1.08998 * 109.47297 * 60.48032 * 7 5 4 35 35 H 0.97006 * 120.00138 * 359.97438 * 16 15 13 36 36 H 1.09006 * 110.01770 * 359.29810 * 21 12 10 37 37 H 1.09006 * 110.48641 * 335.78131 * 22 21 12 38 38 H 1.08993 * 110.48984 * 98.42582 * 22 21 12 39 39 H 1.09003 * 110.71329 * 279.56413 * 23 22 21 40 40 H 1.08998 * 110.92340 * 156.29687 * 23 22 21 41 41 H 1.08995 * 110.48968 * 203.40782 * 24 23 22 42 42 H 1.09004 * 110.59884 * 80.81753 * 24 23 22 43 43 H 1.09001 * 110.03270 * 238.56990 * 25 21 12 44 44 H 1.09000 * 110.03189 * 359.94845 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3178 -1.5057 -0.6858 6 1 3.1955 -2.5853 -0.7729 7 6 4.5714 -1.0447 -1.4319 8 6 3.3876 -1.0865 0.7994 9 1 4.0533 -0.2324 0.9235 10 6 3.8533 -2.2409 1.6489 11 8 3.0422 -2.9457 2.2117 12 7 5.1710 -2.4902 1.7833 13 6 6.0843 -1.7471 1.0811 14 1 6.7872 -2.2366 0.4232 15 6 6.1020 -0.3639 1.2116 16 7 6.7693 0.3690 0.3488 17 14 5.1772 0.4539 2.6135 18 1 4.5872 -0.5880 3.4917 19 1 6.1149 1.2930 3.4022 20 1 4.0945 1.3071 2.0612 21 6 5.6272 -3.5554 2.6797 22 6 6.5803 -2.9767 3.7459 23 6 7.6485 -4.0825 3.9396 24 6 7.8490 -4.6210 2.5014 25 6 6.4332 -4.6007 1.8890 26 8 2.0327 -0.7236 1.1443 27 1 -0.3634 0.5005 0.8975 28 1 -0.3633 0.5271 -0.8823 29 1 -0.3634 -1.0276 -0.0154 30 1 1.3276 -1.4920 -1.5772 31 1 2.3430 -0.0840 -2.0215 32 1 5.4406 -1.5770 -1.0453 33 1 4.4595 -1.2559 -2.4954 34 1 4.7073 0.0269 -1.2866 35 1 7.2499 -0.0557 -0.3790 36 1 4.7720 -4.0296 3.1614 37 1 7.0434 -2.0582 3.3853 38 1 6.0450 -2.7949 4.6777 39 1 7.2758 -4.8676 4.5977 40 1 8.5767 -3.6633 4.3281 41 1 8.2395 -5.6383 2.5258 42 1 8.5177 -3.9701 1.9379 43 1 5.9697 -5.5823 1.9875 44 1 6.4842 -4.3160 0.8380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407958673.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = -83.013765 kcal Electronic energy + Delta-G solvation = -24680.793290 eV Core-core repulsion = 21404.952244 eV Total energy + Delta-G solvation = -3275.841046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98632 -38.43984 -36.57717 -34.51088 -32.73132 -31.89748 -31.51033 -28.11684 -27.74352 -26.18648 -25.65309 -24.09526 -21.37159 -20.37719 -20.13205 -19.66465 -19.27761 -17.62447 -16.13662 -15.70168 -15.59215 -14.99524 -14.62431 -14.45846 -14.10091 -13.63503 -13.41351 -13.25554 -12.78841 -12.60583 -12.29522 -12.20156 -12.07925 -11.88268 -11.42374 -11.21059 -11.15562 -10.96542 -10.64971 -10.61274 -10.55936 -10.52786 -10.16421 -10.12083 -10.07451 -10.04605 -9.87221 -9.54413 -9.12542 -8.86424 -8.38734 -7.71285 -6.74680 -4.31939 3.22205 3.29146 3.47800 3.56409 4.03279 4.11285 4.77735 4.84195 5.05142 5.14392 5.23331 5.24798 5.39808 5.45853 5.57976 5.61607 5.79540 5.89415 5.96544 6.01021 6.07966 6.13652 6.14836 6.17536 6.19467 6.25893 6.29377 6.29947 6.39086 6.42517 6.43546 6.46552 6.56339 6.57467 6.79833 6.89598 6.92337 7.04013 7.24565 7.40847 7.74035 7.97174 8.51068 8.68635 9.32637 9.73790 10.51299 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020066 B = 0.007542 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.047917 B = 3711.478080 C = 3970.083398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.066 0.934 4 C -0.147 4.147 5 C -0.092 4.092 6 H 0.073 0.927 7 C -0.144 4.144 8 C 0.060 3.940 9 H 0.101 0.899 10 C 0.502 3.498 11 O -0.578 6.578 12 N -0.463 5.463 13 C -0.411 4.411 14 H 0.085 0.915 15 C 0.034 3.966 16 N -0.869 5.869 17 Si 1.024 2.976 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.278 1.278 21 C 0.131 3.869 22 C -0.130 4.130 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.124 4.124 26 O -0.355 6.355 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.278 0.722 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -2.362 -1.425 3.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.006 3.994 3 H 0.084 0.916 4 C -0.184 4.184 5 C -0.111 4.111 6 H 0.092 0.908 7 C -0.201 4.201 8 C 0.000 4.000 9 H 0.118 0.882 10 C 0.290 3.710 11 O -0.460 6.460 12 N -0.185 5.185 13 C -0.539 4.539 14 H 0.103 0.897 15 C -0.176 4.176 16 N -0.501 5.501 17 Si 0.851 3.149 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.204 1.204 21 C 0.027 3.973 22 C -0.168 4.168 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.162 4.162 26 O -0.273 6.273 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.288 -1.308 -0.296 3.551 hybrid contribution 0.630 -1.259 -0.897 1.669 sum -2.658 -2.568 -1.192 3.883 Atomic orbital electron populations 1.21764 0.93561 1.02676 1.01875 1.22965 0.94914 0.95607 0.85876 0.91649 1.23111 0.97680 0.99514 0.98127 1.22138 0.95495 1.00240 0.93250 0.90820 1.21988 0.98062 1.02809 0.97230 1.23162 0.84659 0.97883 0.94335 0.88225 1.20183 0.83241 0.85658 0.81903 1.90536 1.54075 1.50953 1.50438 1.43694 1.03611 1.32293 1.38942 1.20149 1.18288 0.89877 1.25569 0.89747 1.26376 0.97411 0.93447 1.00332 1.70792 1.28353 1.38050 1.12907 0.84286 0.76457 0.77192 0.76966 1.19441 1.21096 1.20415 1.21657 0.96210 0.89013 0.90418 1.22674 0.96608 0.99680 0.97847 1.22411 0.98646 0.98028 0.96668 1.22247 0.97275 0.99674 0.96152 1.22357 0.95063 0.97891 1.00907 1.89159 1.26732 1.74057 1.37389 0.92088 0.91530 0.91861 0.91036 0.90587 0.89028 0.94494 0.92023 0.91092 0.90167 0.89591 0.92722 0.92302 0.92137 0.92842 0.91564 0.92852 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.52 37.16 0.35 -1.66 16 2 C 0.06 1.16 3.92 -25.96 -0.10 1.06 16 3 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 4 C -0.15 -2.46 6.28 -25.16 -0.16 -2.61 16 5 C -0.09 -1.85 3.21 -89.05 -0.29 -2.14 16 6 H 0.07 1.52 7.87 -51.93 -0.41 1.12 16 7 C -0.14 -2.81 7.57 37.16 0.28 -2.53 16 8 C 0.06 1.40 1.63 -27.11 -0.04 1.35 16 9 H 0.10 2.45 2.23 -51.93 -0.12 2.34 16 10 C 0.50 12.73 5.07 -10.98 -0.06 12.67 16 11 O -0.58 -15.99 16.02 -12.78 -0.20 -16.19 16 12 N -0.46 -10.95 1.79 -106.54 -0.19 -11.14 16 13 C -0.41 -9.80 4.70 -14.93 -0.07 -9.87 16 14 H 0.09 2.10 7.18 -52.48 -0.38 1.73 16 15 C 0.03 0.85 3.40 -17.47 -0.06 0.79 16 16 N -0.87 -22.06 13.03 55.50 0.72 -21.33 16 17 Si 1.02 24.72 24.16 -169.99 -4.11 20.61 16 18 H -0.27 -6.74 6.49 56.52 0.37 -6.38 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.64 6.92 56.52 0.39 -6.25 16 21 C 0.13 2.77 3.29 -66.81 -0.22 2.55 16 22 C -0.13 -2.50 6.42 -25.03 -0.16 -2.66 16 23 C -0.12 -1.87 6.91 -24.70 -0.17 -2.04 16 24 C -0.12 -1.83 6.83 -25.08 -0.17 -2.00 16 25 C -0.12 -2.26 6.27 -25.61 -0.16 -2.42 16 26 O -0.35 -8.20 10.68 -53.56 -0.57 -8.77 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 30 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 31 H 0.08 1.12 7.73 -51.93 -0.40 0.72 16 32 H 0.09 1.98 5.25 -51.93 -0.27 1.70 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.28 7.70 -51.93 -0.40 0.88 16 35 H 0.28 6.90 8.73 -40.82 -0.36 6.54 16 36 H 0.08 1.80 6.95 -51.93 -0.36 1.43 16 37 H 0.09 1.83 6.66 -51.93 -0.35 1.48 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.41 6.94 -51.93 -0.36 1.05 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -27.89 325.83 -7.76 -35.65 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.30 Total: 5.80 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.02 Total: -9.53 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.53 Total: -32.48 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.78 Total: -24.96 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.11 Total: 20.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.89 -7.76 -35.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407958673.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.367 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds