Wall clock time and date at job start Tue Mar 31 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.55614 * 2 1 4 4 C 1.54993 * 110.61969 * 237.11613 * 2 1 3 5 5 C 1.54812 * 102.09299 * 204.31897 * 4 2 1 6 6 H 1.08999 * 110.48567 * 139.56058 * 5 4 2 7 7 C 1.53003 * 110.60297 * 262.14744 * 5 4 2 8 8 C 1.54099 * 104.18832 * 20.88269 * 5 4 2 9 9 H 1.09006 * 109.87656 * 121.60302 * 8 5 4 10 10 C 1.50700 * 109.87948 * 242.60405 * 8 5 4 11 11 O 1.21290 * 120.00086 * 100.71488 * 10 8 5 12 12 N 1.34772 * 119.99806 * 280.71498 * 10 8 5 13 13 C 1.37106 * 120.00367 * 3.96990 * 12 10 8 14 14 H 1.07995 * 120.00241 * 124.19512 * 13 12 10 15 15 C 1.38952 * 119.99640 * 304.19737 * 13 12 10 16 16 N 1.31409 * 120.00019 * 158.24195 * 15 13 12 17 17 Si 1.86803 * 119.99958 * 338.24848 * 15 13 12 18 18 H 1.48500 * 109.47368 * 93.90919 * 17 15 13 19 19 H 1.48505 * 109.46673 * 213.90564 * 17 15 13 20 20 H 1.48498 * 109.47209 * 333.90530 * 17 15 13 21 21 C 1.46502 * 120.00257 * 183.96474 * 12 10 8 22 22 C 1.54256 * 110.48835 * 118.22445 * 21 12 10 23 23 C 1.53871 * 106.60124 * 142.29120 * 22 21 12 24 24 C 1.54266 * 106.63872 * 359.97438 * 23 22 21 25 25 C 1.54887 * 110.48801 * 233.00238 * 21 12 10 26 26 O 1.43746 * 107.29234 * 2.02810 * 8 5 4 27 27 H 1.09001 * 109.47195 * 182.87825 * 1 2 3 28 28 H 1.09004 * 109.47328 * 302.88217 * 1 2 3 29 29 H 1.09004 * 109.46796 * 62.87849 * 1 2 3 30 30 H 1.09000 * 110.90648 * 86.12472 * 4 2 1 31 31 H 1.09002 * 110.90855 * 322.51943 * 4 2 1 32 32 H 1.08997 * 109.46690 * 181.18536 * 7 5 4 33 33 H 1.08999 * 109.47246 * 301.18712 * 7 5 4 34 34 H 1.09005 * 109.46691 * 61.18447 * 7 5 4 35 35 H 0.96998 * 120.00186 * 180.02562 * 16 15 13 36 36 H 1.09005 * 110.53441 * 355.61068 * 21 12 10 37 37 H 1.09000 * 110.03494 * 23.00908 * 22 21 12 38 38 H 1.09000 * 110.07424 * 261.60093 * 22 21 12 39 39 H 1.09000 * 110.03099 * 119.28288 * 23 22 21 40 40 H 1.08994 * 110.03572 * 240.66560 * 23 22 21 41 41 H 1.08999 * 110.49027 * 95.08963 * 24 23 22 42 42 H 1.09005 * 110.48704 * 217.73502 * 24 23 22 43 43 H 1.08994 * 110.75834 * 321.69073 * 25 21 12 44 44 H 1.09003 * 110.75578 * 84.88137 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4811 -1.2122 -0.7267 6 1 3.7008 -2.2340 -1.0361 7 6 4.5491 -0.2526 -1.2555 8 6 3.3874 -1.1218 0.8088 9 1 3.6133 -2.0920 1.2516 10 6 4.3557 -0.0870 1.3212 11 8 3.9583 1.0185 1.6232 12 7 5.6632 -0.3899 1.4439 13 6 6.1262 -1.6110 1.0266 14 1 6.9284 -1.6668 0.3058 15 6 5.5631 -2.7769 1.5311 16 7 5.6743 -3.9029 0.8628 17 14 4.6479 -2.7435 3.1592 18 1 3.1978 -2.5453 2.9080 19 1 4.8557 -4.0306 3.8703 20 1 5.1627 -1.6282 3.9937 21 6 6.5900 0.5858 2.0232 22 6 7.2277 0.0260 3.3113 23 6 8.6906 0.5028 3.3207 24 6 8.8921 1.3354 2.0378 25 6 7.7921 0.8207 1.0752 26 8 2.0415 -0.7347 1.1327 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3634 0.5579 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1484 -0.1453 -2.0959 31 1 1.4565 -1.6601 -1.4265 32 1 5.5318 -0.5802 -0.9164 33 1 4.5242 -0.2461 -2.3452 34 1 4.3519 0.7521 -0.8816 35 1 5.2809 -4.7166 1.2148 36 1 6.0769 1.5254 2.2286 37 1 7.1901 -1.0633 3.3037 38 1 6.7038 0.4113 4.1861 39 1 8.8765 1.1202 4.1996 40 1 9.3630 -0.3551 3.3185 41 1 8.7513 2.3961 2.2452 42 1 9.8820 1.1559 1.6180 43 1 8.0992 -0.1121 0.6023 44 1 7.5502 1.5720 0.3234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407958675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:35 Heat of formation + Delta-G solvation = -78.500270 kcal Electronic energy + Delta-G solvation = -24786.867445 eV Core-core repulsion = 21511.222119 eV Total energy + Delta-G solvation = -3275.645326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18319 -38.28783 -36.46818 -34.44269 -32.68859 -31.88987 -31.50110 -28.11947 -27.67909 -26.19011 -25.66910 -24.60390 -21.61194 -20.28038 -20.11845 -19.40610 -19.09029 -17.16517 -16.24244 -15.89389 -15.47980 -15.06655 -14.72436 -14.26757 -13.92731 -13.78730 -13.25857 -12.98528 -12.86447 -12.63079 -12.28783 -12.06223 -11.96999 -11.76745 -11.57667 -11.40480 -11.27488 -10.96339 -10.80649 -10.79292 -10.65647 -10.51648 -10.23433 -10.14822 -10.02672 -9.94423 -9.72739 -9.60476 -9.48173 -8.96905 -8.19283 -7.48812 -6.55237 -4.29418 3.12830 3.23733 3.32444 3.63181 4.07407 4.26966 4.60352 4.77394 5.10764 5.19533 5.22792 5.27194 5.40204 5.56474 5.64185 5.65789 5.82409 5.93893 6.00384 6.04756 6.09580 6.12240 6.14292 6.16125 6.26279 6.29254 6.34171 6.35696 6.40526 6.42185 6.47416 6.56090 6.57491 6.58792 6.85609 6.89828 6.95297 7.05929 7.14963 7.51643 7.66643 7.80657 8.42018 8.93814 9.25930 9.71137 10.52907 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.008038 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.922858 B = 3482.673897 C = 3975.478188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.150 4.150 5 C -0.090 4.090 6 H 0.093 0.907 7 C -0.152 4.152 8 C 0.062 3.938 9 H 0.123 0.877 10 C 0.488 3.512 11 O -0.585 6.585 12 N -0.465 5.465 13 C -0.341 4.341 14 H 0.102 0.898 15 C 0.077 3.923 16 N -0.851 5.851 17 Si 0.830 3.170 18 H -0.256 1.256 19 H -0.282 1.282 20 H -0.252 1.252 21 C 0.130 3.870 22 C -0.133 4.133 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.125 4.125 26 O -0.358 6.358 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.276 0.724 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 4.722 -2.272 5.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.090 0.910 4 C -0.188 4.188 5 C -0.109 4.109 6 H 0.111 0.889 7 C -0.209 4.209 8 C 0.002 3.998 9 H 0.140 0.860 10 C 0.277 3.723 11 O -0.469 6.469 12 N -0.187 5.187 13 C -0.468 4.468 14 H 0.120 0.880 15 C -0.131 4.131 16 N -0.485 5.485 17 Si 0.654 3.346 18 H -0.182 1.182 19 H -0.209 1.209 20 H -0.175 1.175 21 C 0.026 3.974 22 C -0.171 4.171 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.163 4.163 26 O -0.276 6.276 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.212 5.014 -1.941 5.512 hybrid contribution -0.232 -0.319 0.871 0.957 sum -1.444 4.695 -1.069 5.027 Atomic orbital electron populations 1.21738 0.93989 1.02396 1.01779 1.23094 0.94191 0.96161 0.85393 0.90957 1.23317 0.96904 1.00240 0.98342 1.22089 0.94324 1.01724 0.92732 0.88890 1.22077 1.01345 0.98329 0.99172 1.23050 0.81888 0.98409 0.96443 0.86022 1.21008 0.84195 0.88336 0.78729 1.90516 1.78698 1.23577 1.54061 1.43733 1.05057 1.14836 1.55107 1.18743 1.23474 0.79966 1.24634 0.88026 1.25584 0.95780 0.95267 0.96448 1.69732 1.41900 1.00350 1.36530 0.87822 0.81724 0.78933 0.86106 1.18182 1.20854 1.17547 1.21862 0.90289 0.93205 0.92031 1.22480 0.94428 1.02798 0.97418 1.22036 0.97144 0.99127 0.97207 1.22282 0.98609 0.98931 0.96049 1.22727 0.94851 1.01418 0.97337 1.88875 1.26117 1.73064 1.39581 0.92131 0.92237 0.91585 0.90661 0.90964 0.88744 0.93745 0.93333 0.91341 0.89895 0.90025 0.93142 0.92837 0.92085 0.92352 0.92193 0.89900 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.66 37.16 0.36 -1.71 16 2 C 0.07 1.29 3.73 -25.68 -0.10 1.19 16 3 H 0.07 1.43 7.76 -51.93 -0.40 1.03 16 4 C -0.15 -2.54 6.15 -24.72 -0.15 -2.69 16 5 C -0.09 -1.80 3.35 -89.09 -0.30 -2.10 16 6 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 7 C -0.15 -2.95 7.88 37.16 0.29 -2.66 16 8 C 0.06 1.46 2.23 -27.31 -0.06 1.40 16 9 H 0.12 3.04 2.64 -51.93 -0.14 2.90 16 10 C 0.49 11.92 3.53 -10.99 -0.04 11.88 16 11 O -0.59 -15.42 15.27 -13.39 -0.20 -15.62 16 12 N -0.46 -10.71 1.42 -105.98 -0.15 -10.86 16 13 C -0.34 -8.16 5.28 -14.93 -0.08 -8.24 16 14 H 0.10 2.55 6.76 -52.49 -0.36 2.20 16 15 C 0.08 1.92 4.01 -17.47 -0.07 1.85 16 16 N -0.85 -21.82 13.96 55.50 0.77 -21.04 16 17 Si 0.83 20.01 24.09 -169.99 -4.09 15.91 16 18 H -0.26 -6.39 6.23 56.52 0.35 -6.04 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.25 -6.15 6.18 56.52 0.35 -5.80 16 21 C 0.13 2.69 3.26 -66.28 -0.22 2.47 16 22 C -0.13 -2.58 5.86 -25.62 -0.15 -2.73 16 23 C -0.12 -1.83 6.80 -25.62 -0.17 -2.01 16 24 C -0.12 -1.79 6.84 -25.03 -0.17 -1.96 16 25 C -0.13 -2.21 6.39 -24.70 -0.16 -2.37 16 26 O -0.36 -8.29 10.56 -54.17 -0.57 -8.86 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.10 7.87 -51.93 -0.41 0.69 16 31 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 32 H 0.09 2.00 5.21 -51.93 -0.27 1.73 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.99 7.03 -51.93 -0.37 0.62 16 35 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.08 1.81 6.99 -51.93 -0.36 1.45 16 37 H 0.08 1.75 5.81 -51.93 -0.30 1.45 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.56 6.44 -51.93 -0.33 1.22 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -27.68 322.23 -7.65 -35.33 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.24 Total: 7.95 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.01 Total: -7.65 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.62 Total: -31.90 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.78 Total: -24.49 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.09 Total: 15.91 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.68 -7.65 -35.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407958675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.175 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds