Wall clock time and date at job start Tue Mar 31 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.55614 * 2 1 4 4 C 1.54993 * 110.61969 * 237.11613 * 2 1 3 5 5 C 1.54812 * 102.09299 * 204.31897 * 4 2 1 6 6 H 1.08999 * 110.48567 * 139.56058 * 5 4 2 7 7 C 1.53003 * 110.60297 * 262.14744 * 5 4 2 8 8 C 1.54099 * 104.18832 * 20.88269 * 5 4 2 9 9 H 1.09006 * 109.87656 * 121.60302 * 8 5 4 10 10 C 1.50700 * 109.87948 * 242.60405 * 8 5 4 11 11 O 1.21290 * 120.00086 * 100.71488 * 10 8 5 12 12 N 1.34772 * 119.99806 * 280.71498 * 10 8 5 13 13 C 1.37106 * 120.00367 * 3.96990 * 12 10 8 14 14 H 1.07995 * 120.00241 * 124.19512 * 13 12 10 15 15 C 1.38952 * 119.99640 * 304.19737 * 13 12 10 16 16 N 1.31409 * 120.00019 * 158.24195 * 15 13 12 17 17 Si 1.86803 * 119.99958 * 338.24848 * 15 13 12 18 18 H 1.48500 * 109.47368 * 93.90919 * 17 15 13 19 19 H 1.48505 * 109.46673 * 213.90564 * 17 15 13 20 20 H 1.48498 * 109.47209 * 333.90530 * 17 15 13 21 21 C 1.46502 * 120.00257 * 183.96474 * 12 10 8 22 22 C 1.54256 * 110.48835 * 118.22445 * 21 12 10 23 23 C 1.53871 * 106.60124 * 142.29120 * 22 21 12 24 24 C 1.54266 * 106.63872 * 359.97438 * 23 22 21 25 25 C 1.54887 * 110.48801 * 233.00238 * 21 12 10 26 26 O 1.43746 * 107.29234 * 2.02810 * 8 5 4 27 27 H 1.09001 * 109.47195 * 182.87825 * 1 2 3 28 28 H 1.09004 * 109.47328 * 302.88217 * 1 2 3 29 29 H 1.09004 * 109.46796 * 62.87849 * 1 2 3 30 30 H 1.09000 * 110.90648 * 86.12472 * 4 2 1 31 31 H 1.09002 * 110.90855 * 322.51943 * 4 2 1 32 32 H 1.08997 * 109.46690 * 181.18536 * 7 5 4 33 33 H 1.08999 * 109.47246 * 301.18712 * 7 5 4 34 34 H 1.09005 * 109.46691 * 61.18447 * 7 5 4 35 35 H 0.96998 * 120.00186 * 180.02562 * 16 15 13 36 36 H 1.09005 * 110.53441 * 355.61068 * 21 12 10 37 37 H 1.09000 * 110.03494 * 23.00908 * 22 21 12 38 38 H 1.09000 * 110.07424 * 261.60093 * 22 21 12 39 39 H 1.09000 * 110.03099 * 119.28288 * 23 22 21 40 40 H 1.08994 * 110.03572 * 240.66560 * 23 22 21 41 41 H 1.08999 * 110.49027 * 95.08963 * 24 23 22 42 42 H 1.09005 * 110.48704 * 217.73502 * 24 23 22 43 43 H 1.08994 * 110.75834 * 321.69073 * 25 21 12 44 44 H 1.09003 * 110.75578 * 84.88137 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4811 -1.2122 -0.7267 6 1 3.7008 -2.2340 -1.0361 7 6 4.5491 -0.2526 -1.2555 8 6 3.3874 -1.1218 0.8088 9 1 3.6133 -2.0920 1.2516 10 6 4.3557 -0.0870 1.3212 11 8 3.9583 1.0185 1.6232 12 7 5.6632 -0.3899 1.4439 13 6 6.1262 -1.6110 1.0266 14 1 6.9284 -1.6668 0.3058 15 6 5.5631 -2.7769 1.5311 16 7 5.6743 -3.9029 0.8628 17 14 4.6479 -2.7435 3.1592 18 1 3.1978 -2.5453 2.9080 19 1 4.8557 -4.0306 3.8703 20 1 5.1627 -1.6282 3.9937 21 6 6.5900 0.5858 2.0232 22 6 7.2277 0.0260 3.3113 23 6 8.6906 0.5028 3.3207 24 6 8.8921 1.3354 2.0378 25 6 7.7921 0.8207 1.0752 26 8 2.0415 -0.7347 1.1327 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3634 0.5579 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1484 -0.1453 -2.0959 31 1 1.4565 -1.6601 -1.4265 32 1 5.5318 -0.5802 -0.9164 33 1 4.5242 -0.2461 -2.3452 34 1 4.3519 0.7521 -0.8816 35 1 5.2809 -4.7166 1.2148 36 1 6.0769 1.5254 2.2286 37 1 7.1901 -1.0633 3.3037 38 1 6.7038 0.4113 4.1861 39 1 8.8765 1.1202 4.1996 40 1 9.3630 -0.3551 3.3185 41 1 8.7513 2.3961 2.2452 42 1 9.8820 1.1559 1.6180 43 1 8.0992 -0.1121 0.6023 44 1 7.5502 1.5720 0.3234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407958675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:35 Heat of formation + Delta-G solvation = -93.595633 kcal Electronic energy + Delta-G solvation = -24787.522029 eV Core-core repulsion = 21511.222119 eV Total energy + Delta-G solvation = -3276.299910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93549 -39.90618 -38.13367 -36.28683 -34.33447 -33.75922 -32.94887 -29.55675 -29.22066 -27.68094 -27.32437 -26.43621 -23.17257 -21.82024 -21.57556 -21.01812 -20.81621 -19.01819 -17.94833 -17.63965 -17.02523 -16.77443 -16.28199 -16.04686 -15.74747 -15.39678 -14.85887 -14.59874 -14.49836 -14.18370 -13.91532 -13.58422 -13.42514 -13.26536 -13.07708 -13.04434 -12.90310 -12.65727 -12.46818 -12.40467 -12.10294 -11.94773 -11.85976 -11.81547 -11.55625 -11.40092 -11.28274 -11.20929 -11.16064 -10.93141 -10.05537 -9.36684 -8.54612 -6.26203 1.14527 1.24648 1.33537 1.73651 2.10248 2.51867 2.82795 3.02534 3.59557 3.76172 3.79854 3.86110 3.97432 4.09638 4.12953 4.23635 4.39288 4.49677 4.58334 4.63489 4.63853 4.68497 4.69222 4.73235 4.78325 4.83683 4.90022 4.90869 5.00360 5.06588 5.13509 5.14030 5.23252 5.25482 5.34546 5.38232 5.43154 5.52460 5.56078 5.71158 5.91844 5.96276 6.45088 6.97538 7.33806 7.80453 8.56683 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.008038 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.922858 B = 3482.673897 C = 3975.478188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.058 3.942 3 H 0.054 0.946 4 C -0.137 4.137 5 C -0.091 4.091 6 H 0.085 0.915 7 C -0.142 4.142 8 C 0.056 3.944 9 H 0.102 0.898 10 C 0.481 3.519 11 O -0.612 6.612 12 N -0.464 5.464 13 C -0.322 4.322 14 H 0.093 0.907 15 C 0.064 3.936 16 N -0.871 5.871 17 Si 0.856 3.144 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.262 1.262 21 C 0.117 3.883 22 C -0.134 4.134 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.118 4.118 26 O -0.386 6.386 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.279 0.721 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 5.458 -3.323 6.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.001 3.999 3 H 0.072 0.928 4 C -0.174 4.174 5 C -0.111 4.111 6 H 0.104 0.896 7 C -0.199 4.199 8 C -0.005 4.005 9 H 0.119 0.881 10 C 0.271 3.729 11 O -0.498 6.498 12 N -0.186 5.186 13 C -0.449 4.449 14 H 0.110 0.890 15 C -0.142 4.142 16 N -0.506 5.506 17 Si 0.682 3.318 18 H -0.199 1.199 19 H -0.201 1.201 20 H -0.186 1.186 21 C 0.014 3.986 22 C -0.172 4.172 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.156 4.156 26 O -0.305 6.305 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.835 5.740 -2.986 6.524 hybrid contribution -0.365 -0.497 1.208 1.356 sum -1.201 5.243 -1.778 5.665 Atomic orbital electron populations 1.21751 0.90790 1.03154 1.03476 1.23389 0.96686 0.94976 0.84847 0.92803 1.23307 0.94574 1.01158 0.98370 1.22120 0.96742 1.01542 0.90662 0.89645 1.21942 0.99816 0.97031 1.01064 1.23026 0.82049 0.96908 0.98514 0.88051 1.21318 0.84769 0.88286 0.78509 1.90481 1.79189 1.24701 1.55427 1.43813 1.05183 1.14917 1.54657 1.18541 1.22403 0.80133 1.23838 0.89008 1.25706 0.96071 0.95380 0.97040 1.69739 1.43040 1.00733 1.37124 0.87454 0.80360 0.78666 0.85367 1.19859 1.20119 1.18579 1.22111 0.90783 0.91984 0.93717 1.22465 0.97258 1.01114 0.96377 1.22022 0.94097 0.99942 0.98806 1.22273 0.98539 0.99517 0.94507 1.22657 0.94419 1.01131 0.97439 1.88839 1.25924 1.73679 1.42082 0.91577 0.92600 0.88092 0.87768 0.89065 0.90989 0.90530 0.94792 0.91005 0.91329 0.92460 0.93780 0.90500 0.91359 0.90737 0.89745 0.91199 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.66 71.98 0.70 -2.95 16 2 C 0.06 2.10 3.73 31.27 0.12 2.22 16 3 H 0.05 2.13 7.76 -2.39 -0.02 2.11 16 4 C -0.14 -4.30 6.15 31.89 0.20 -4.11 16 5 C -0.09 -3.62 3.35 -9.80 -0.03 -3.65 16 6 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 7 C -0.14 -5.38 7.88 71.98 0.57 -4.81 16 8 C 0.06 2.64 2.23 30.22 0.07 2.71 16 9 H 0.10 5.19 2.64 -2.38 -0.01 5.18 16 10 C 0.48 24.06 3.53 87.66 0.31 24.36 16 11 O -0.61 -33.17 15.27 15.05 0.23 -32.94 16 12 N -0.46 -21.80 1.42 -607.59 -0.86 -22.67 16 13 C -0.32 -15.62 5.28 84.04 0.44 -15.18 16 14 H 0.09 4.67 6.76 -2.91 -0.02 4.66 16 15 C 0.06 3.25 4.01 84.93 0.34 3.59 16 16 N -0.87 -44.94 13.96 21.66 0.30 -44.64 16 17 Si 0.86 41.97 24.09 68.60 1.65 43.62 16 18 H -0.27 -13.99 6.23 99.48 0.62 -13.37 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.26 -13.09 6.18 99.48 0.61 -12.48 16 21 C 0.12 4.89 3.26 46.06 0.15 5.04 16 22 C -0.13 -5.17 5.86 31.31 0.18 -4.98 16 23 C -0.11 -3.21 6.80 31.32 0.21 -3.00 16 24 C -0.11 -2.96 6.84 31.69 0.22 -2.74 16 25 C -0.12 -4.05 6.39 31.91 0.20 -3.85 16 26 O -0.39 -18.11 10.56 -130.87 -1.38 -19.49 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.10 2.68 7.87 -2.39 -0.02 2.66 16 31 H 0.09 2.54 8.06 -2.39 -0.02 2.52 16 32 H 0.07 3.05 5.21 -2.39 -0.01 3.03 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.03 1.37 7.03 -2.38 -0.02 1.35 16 35 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 36 H 0.07 3.05 6.99 -2.38 -0.02 3.03 16 37 H 0.06 2.48 5.81 -2.39 -0.01 2.47 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.90 8.14 -2.38 -0.02 1.89 16 43 H 0.07 2.58 6.44 -2.39 -0.02 2.57 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -61.35 322.23 4.41 -56.94 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.80 Total: 26.54 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 3.67 Total: -7.36 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -0.56 Total: -67.31 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -1.15 Total: -52.43 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.65 Total: 43.62 kcal Total: -61.35 4.41 -56.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407958675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.654 kcal (2) G-P(sol) polarization free energy of solvation -61.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds