Wall clock time and date at job start Tue Mar 31 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 H 1.08997 * 110.33164 * 307.24865 * 3 2 1 5 5 C 1.54482 * 110.37339 * 184.99670 * 3 2 1 6 6 C 1.54502 * 104.06429 * 217.19292 * 5 3 2 7 7 C 1.54477 * 104.06405 * 359.97438 * 6 5 3 8 8 H 1.09004 * 110.37248 * 265.15145 * 7 6 5 9 9 C 1.50696 * 110.37309 * 142.92483 * 7 6 5 10 10 O 1.21298 * 119.99928 * 245.00243 * 9 7 6 11 11 N 1.34773 * 120.00544 * 64.99775 * 9 7 6 12 12 C 1.37102 * 119.99654 * 0.02562 * 11 9 7 13 13 H 1.07996 * 119.99847 * 234.75771 * 12 11 9 14 14 C 1.38956 * 119.99948 * 54.75716 * 12 11 9 15 15 N 1.31411 * 119.99965 * 21.72681 * 14 12 11 16 16 Si 1.86802 * 119.99908 * 201.72063 * 14 12 11 17 17 H 1.48502 * 109.46964 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46852 * 120.00258 * 16 14 12 19 19 H 1.48505 * 109.47010 * 240.00231 * 16 14 12 20 20 C 1.46496 * 120.00623 * 180.02562 * 11 9 7 21 21 C 1.54270 * 110.03358 * 238.86696 * 20 11 9 22 22 C 1.54963 * 104.15759 * 217.13532 * 21 20 11 23 23 C 1.54893 * 102.77991 * 37.88557 * 22 21 20 24 24 C 1.53875 * 110.03630 * 121.64469 * 20 11 9 25 25 O 1.44422 * 104.80125 * 23.98195 * 7 6 5 26 26 H 1.09000 * 109.47075 * 59.99449 * 1 2 3 27 27 H 1.09000 * 109.47125 * 299.99819 * 1 2 3 28 28 H 1.08997 * 109.47534 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46893 * 119.99936 * 2 1 3 30 30 H 1.08996 * 109.47428 * 239.99805 * 2 1 3 31 31 H 1.09003 * 110.51256 * 335.83975 * 5 3 2 32 32 H 1.09003 * 110.50971 * 98.40849 * 5 3 2 33 33 H 1.09000 * 110.51526 * 118.64746 * 6 5 3 34 34 H 1.09010 * 110.51312 * 241.35861 * 6 5 3 35 35 H 0.96997 * 120.00098 * 174.73214 * 15 14 12 36 36 H 1.09005 * 110.01573 * 0.25221 * 20 11 9 37 37 H 1.08995 * 110.48378 * 335.77733 * 21 20 11 38 38 H 1.08990 * 110.49020 * 98.42522 * 21 20 11 39 39 H 1.08999 * 110.71845 * 279.57156 * 22 21 20 40 40 H 1.09006 * 110.92600 * 156.29479 * 22 21 20 41 41 H 1.08998 * 110.48331 * 203.40549 * 23 22 21 42 42 H 1.08990 * 110.60022 * 80.81856 * 23 22 21 43 43 H 1.09003 * 110.03070 * 238.57297 * 24 20 11 44 44 H 1.08997 * 110.02612 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5830 2.0057 -0.8136 5 6 3.5795 1.4685 -0.1261 6 6 4.0108 2.6418 0.7819 7 6 2.6809 3.1862 1.3488 8 1 2.3227 4.0186 0.7430 9 6 2.8595 3.6198 2.7810 10 8 2.2712 3.0386 3.6684 11 7 3.6729 4.6531 3.0759 12 6 4.3375 5.3102 2.0728 13 1 5.4116 5.4145 2.1148 14 6 3.6291 5.8421 1.0023 15 7 2.3477 6.1052 1.1280 16 14 4.4982 6.1832 -0.6157 17 1 5.9287 5.8018 -0.4991 18 1 3.8611 5.3891 -1.6968 19 1 4.3956 7.6293 -0.9374 20 6 3.8469 5.0742 4.4682 21 6 3.4268 6.5497 4.6305 22 6 4.4424 7.1230 5.6509 23 6 5.7642 6.4226 5.2491 24 6 5.3323 4.9932 4.8617 25 8 1.7629 2.0742 1.2685 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 4.0079 0.5319 0.2307 32 1 3.8750 1.6535 -1.1589 33 1 4.6524 2.2852 1.5877 34 1 4.5195 3.4093 0.1985 35 1 1.8703 6.5466 0.4083 36 1 3.2512 4.4418 5.1265 37 1 3.5045 7.0753 3.6788 38 1 2.4120 6.6165 5.0226 39 1 4.1582 6.8568 6.6689 40 1 4.5310 8.2044 5.5464 41 1 6.4542 6.3973 6.0925 42 1 6.2219 6.9266 4.3980 43 1 5.4573 4.3221 5.7115 44 1 5.9237 4.6409 4.0166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408245641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:32 Heat of formation + Delta-G solvation = -94.114861 kcal Electronic energy + Delta-G solvation = -24078.757270 eV Core-core repulsion = 20802.434845 eV Total energy + Delta-G solvation = -3276.322425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.50824 -38.21367 -36.35882 -34.21754 -33.11800 -31.47275 -31.28403 -28.26225 -27.93048 -26.64794 -24.87682 -23.48690 -21.22621 -20.44466 -19.99128 -19.59494 -19.33084 -16.73266 -15.90640 -15.85522 -15.25297 -14.94831 -14.57631 -14.47951 -14.07307 -13.38249 -13.23169 -13.01450 -12.96684 -12.73399 -12.56776 -12.36406 -11.78799 -11.33098 -11.23085 -11.11124 -11.04681 -10.95516 -10.77982 -10.65799 -10.51050 -10.46983 -10.37098 -10.32511 -10.20496 -10.06030 -9.95703 -9.62709 -9.23536 -8.78355 -8.04526 -7.26636 -6.46696 -4.25960 3.01349 3.14052 3.15701 3.91736 4.11194 4.31719 4.78411 4.97931 5.03761 5.26053 5.38447 5.38972 5.47303 5.49124 5.59050 5.64498 5.72042 5.94235 6.06561 6.10383 6.12300 6.21922 6.24622 6.26594 6.31341 6.33396 6.37424 6.42337 6.50675 6.54656 6.56344 6.57309 6.62690 6.71924 6.75361 6.92917 6.96125 7.13841 7.33071 7.42425 7.65014 8.01380 8.60707 8.88337 9.59792 10.02924 10.56717 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.006843 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.394108 B = 4090.647511 C = 4945.012789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.070 3.930 4 H 0.060 0.940 5 C -0.154 4.154 6 C -0.124 4.124 7 C 0.069 3.931 8 H 0.113 0.887 9 C 0.522 3.478 10 O -0.595 6.595 11 N -0.446 5.446 12 C -0.336 4.336 13 H 0.083 0.917 14 C 0.051 3.949 15 N -0.850 5.850 16 Si 0.891 3.109 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.279 1.279 20 C 0.135 3.865 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.126 4.126 25 O -0.353 6.353 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.272 0.728 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 -3.378 -2.276 5.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.012 3.988 4 H 0.078 0.922 5 C -0.192 4.192 6 C -0.162 4.162 7 C 0.009 3.991 8 H 0.130 0.870 9 C 0.311 3.689 10 O -0.478 6.478 11 N -0.167 5.167 12 C -0.464 4.464 13 H 0.101 0.899 14 C -0.156 4.156 15 N -0.485 5.485 16 Si 0.717 3.283 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.205 1.205 20 C 0.031 3.969 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.165 4.165 25 O -0.271 6.271 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.095 -3.712 -1.783 5.152 hybrid contribution 0.489 0.592 -1.140 1.375 sum 3.585 -3.120 -2.923 5.579 Atomic orbital electron populations 1.21723 0.95605 1.00932 1.02430 1.21543 0.96506 0.95015 1.02062 1.22944 0.94010 0.93822 0.88014 0.92173 1.23049 0.96267 0.99693 1.00216 1.22650 0.97976 0.96624 0.98946 1.23064 0.88667 0.90487 0.96874 0.86953 1.19954 0.80353 0.79729 0.88896 1.90513 1.50727 1.57494 1.49112 1.43265 1.42239 1.26719 1.04474 1.19116 0.91739 1.36859 0.98711 0.89908 1.25617 0.95384 0.94477 1.00104 1.69979 1.08913 1.36497 1.33093 0.86441 0.80499 0.78564 0.82824 1.18653 1.19976 1.20509 1.21557 0.94404 0.95071 0.85889 1.22587 0.96926 0.96343 0.99965 1.22455 0.96024 0.98975 0.98632 1.22246 0.96825 0.96340 0.99919 1.22398 0.97516 0.96199 1.00386 1.89173 1.58004 1.44248 1.35690 0.93127 0.91718 0.93226 0.91205 0.91367 0.91122 0.91267 0.91197 0.90176 0.91738 0.90532 0.89007 0.93132 0.92605 0.92459 0.93040 0.91676 0.92982 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.85 37.16 0.37 -1.74 16 2 C -0.11 -1.68 5.56 -26.73 -0.15 -1.82 16 3 C 0.07 1.26 3.25 -25.95 -0.08 1.18 16 4 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.15 -2.57 6.63 -25.16 -0.17 -2.74 16 6 C -0.12 -2.49 5.52 -25.17 -0.14 -2.63 16 7 C 0.07 1.65 2.68 -27.11 -0.07 1.58 16 8 H 0.11 2.85 5.03 -51.93 -0.26 2.59 16 9 C 0.52 13.83 6.53 -10.99 -0.07 13.76 16 10 O -0.59 -17.46 15.90 -13.62 -0.22 -17.68 16 11 N -0.45 -10.91 2.34 -106.54 -0.25 -11.16 16 12 C -0.34 -7.96 5.71 -14.93 -0.09 -8.05 16 13 H 0.08 1.92 7.20 -52.49 -0.38 1.55 16 14 C 0.05 1.22 3.16 -17.47 -0.06 1.16 16 15 N -0.85 -21.65 11.73 55.50 0.65 -21.00 16 16 Si 0.89 18.27 27.90 -169.99 -4.74 13.53 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.13 2.99 3.29 -66.81 -0.22 2.77 16 21 C -0.12 -2.48 6.42 -25.03 -0.16 -2.64 16 22 C -0.12 -2.03 6.91 -24.70 -0.17 -2.20 16 23 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 24 C -0.13 -2.36 6.26 -25.61 -0.16 -2.52 16 25 O -0.35 -8.23 10.40 -54.39 -0.57 -8.80 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 34 H 0.08 1.58 5.55 -51.92 -0.29 1.29 16 35 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 36 H 0.08 1.83 6.94 -51.93 -0.36 1.47 16 37 H 0.09 2.13 7.07 -51.93 -0.37 1.76 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.38 6.87 -51.93 -0.36 1.03 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -28.70 336.61 -8.84 -37.55 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.45 Total: 8.41 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.34 Total: -5.92 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.40 Total: -32.16 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.78 Total: -26.47 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -4.74 Total: 13.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.70 -8.84 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408245641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.567 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds