Wall clock time and date at job start Tue Mar 31 2020 05:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 H 1.08997 * 110.33164 * 307.24865 * 3 2 1 5 5 C 1.54482 * 110.37339 * 184.99670 * 3 2 1 6 6 C 1.54502 * 104.06429 * 217.19292 * 5 3 2 7 7 C 1.54477 * 104.06405 * 359.97438 * 6 5 3 8 8 H 1.09004 * 110.37248 * 265.15145 * 7 6 5 9 9 C 1.50696 * 110.37309 * 142.92483 * 7 6 5 10 10 O 1.21298 * 119.99928 * 245.00243 * 9 7 6 11 11 N 1.34773 * 120.00544 * 64.99775 * 9 7 6 12 12 C 1.37102 * 119.99654 * 0.02562 * 11 9 7 13 13 H 1.07996 * 119.99847 * 234.75771 * 12 11 9 14 14 C 1.38956 * 119.99948 * 54.75716 * 12 11 9 15 15 N 1.31411 * 119.99965 * 21.72681 * 14 12 11 16 16 Si 1.86802 * 119.99908 * 201.72063 * 14 12 11 17 17 H 1.48502 * 109.46964 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46852 * 120.00258 * 16 14 12 19 19 H 1.48505 * 109.47010 * 240.00231 * 16 14 12 20 20 C 1.46496 * 120.00623 * 180.02562 * 11 9 7 21 21 C 1.54270 * 110.03358 * 238.86696 * 20 11 9 22 22 C 1.54963 * 104.15759 * 217.13532 * 21 20 11 23 23 C 1.54893 * 102.77991 * 37.88557 * 22 21 20 24 24 C 1.53875 * 110.03630 * 121.64469 * 20 11 9 25 25 O 1.44422 * 104.80125 * 23.98195 * 7 6 5 26 26 H 1.09000 * 109.47075 * 59.99449 * 1 2 3 27 27 H 1.09000 * 109.47125 * 299.99819 * 1 2 3 28 28 H 1.08997 * 109.47534 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46893 * 119.99936 * 2 1 3 30 30 H 1.08996 * 109.47428 * 239.99805 * 2 1 3 31 31 H 1.09003 * 110.51256 * 335.83975 * 5 3 2 32 32 H 1.09003 * 110.50971 * 98.40849 * 5 3 2 33 33 H 1.09000 * 110.51526 * 118.64746 * 6 5 3 34 34 H 1.09010 * 110.51312 * 241.35861 * 6 5 3 35 35 H 0.96997 * 120.00098 * 174.73214 * 15 14 12 36 36 H 1.09005 * 110.01573 * 0.25221 * 20 11 9 37 37 H 1.08995 * 110.48378 * 335.77733 * 21 20 11 38 38 H 1.08990 * 110.49020 * 98.42522 * 21 20 11 39 39 H 1.08999 * 110.71845 * 279.57156 * 22 21 20 40 40 H 1.09006 * 110.92600 * 156.29479 * 22 21 20 41 41 H 1.08998 * 110.48331 * 203.40549 * 23 22 21 42 42 H 1.08990 * 110.60022 * 80.81856 * 23 22 21 43 43 H 1.09003 * 110.03070 * 238.57297 * 24 20 11 44 44 H 1.08997 * 110.02612 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5830 2.0057 -0.8136 5 6 3.5795 1.4685 -0.1261 6 6 4.0108 2.6418 0.7819 7 6 2.6809 3.1862 1.3488 8 1 2.3227 4.0186 0.7430 9 6 2.8595 3.6198 2.7810 10 8 2.2712 3.0386 3.6684 11 7 3.6729 4.6531 3.0759 12 6 4.3375 5.3102 2.0728 13 1 5.4116 5.4145 2.1148 14 6 3.6291 5.8421 1.0023 15 7 2.3477 6.1052 1.1280 16 14 4.4982 6.1832 -0.6157 17 1 5.9287 5.8018 -0.4991 18 1 3.8611 5.3891 -1.6968 19 1 4.3956 7.6293 -0.9374 20 6 3.8469 5.0742 4.4682 21 6 3.4268 6.5497 4.6305 22 6 4.4424 7.1230 5.6509 23 6 5.7642 6.4226 5.2491 24 6 5.3323 4.9932 4.8617 25 8 1.7629 2.0742 1.2685 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 4.0079 0.5319 0.2307 32 1 3.8750 1.6535 -1.1589 33 1 4.6524 2.2852 1.5877 34 1 4.5195 3.4093 0.1985 35 1 1.8703 6.5466 0.4083 36 1 3.2512 4.4418 5.1265 37 1 3.5045 7.0753 3.6788 38 1 2.4120 6.6165 5.0226 39 1 4.1582 6.8568 6.6689 40 1 4.5310 8.2044 5.5464 41 1 6.4542 6.3973 6.0925 42 1 6.2219 6.9266 4.3980 43 1 5.4573 4.3221 5.7115 44 1 5.9237 4.6409 4.0166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408245641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:31 Heat of formation + Delta-G solvation = -109.636051 kcal Electronic energy + Delta-G solvation = -24079.430320 eV Core-core repulsion = 20802.434845 eV Total energy + Delta-G solvation = -3276.995475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28894 -39.86326 -38.12507 -36.09687 -34.44274 -33.34600 -32.85835 -29.82036 -29.47315 -28.24732 -26.73447 -24.98959 -22.67898 -21.83396 -21.53756 -21.34026 -21.08504 -18.57011 -17.66896 -17.38288 -17.09353 -16.53671 -16.33488 -15.99413 -15.71507 -15.03954 -14.63560 -14.56323 -14.46297 -14.18555 -14.13498 -13.92733 -13.53019 -13.05007 -12.78794 -12.69950 -12.58200 -12.55041 -12.26909 -12.22586 -12.04508 -11.87668 -11.83363 -11.82002 -11.65753 -11.44034 -11.39403 -11.32757 -10.92356 -10.65611 -10.00401 -9.19785 -8.32965 -6.18864 1.37956 1.45723 1.56507 2.04346 2.29001 2.61891 2.94452 3.38307 3.71043 3.82336 3.86753 3.90941 4.07957 4.16515 4.22579 4.27381 4.40436 4.46630 4.54768 4.63301 4.70885 4.78433 4.80635 4.82956 4.90820 4.92142 4.92617 4.99457 5.04289 5.07192 5.15981 5.16744 5.22229 5.24365 5.26104 5.41940 5.42234 5.49585 5.55306 5.63819 6.03915 6.14629 6.67544 7.00369 7.62476 8.08991 8.71945 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.006843 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.394108 B = 4090.647511 C = 4945.012789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.057 3.943 4 H 0.063 0.937 5 C -0.144 4.144 6 C -0.119 4.119 7 C 0.070 3.930 8 H 0.095 0.905 9 C 0.497 3.503 10 O -0.642 6.642 11 N -0.443 5.443 12 C -0.341 4.341 13 H 0.091 0.909 14 C 0.021 3.979 15 N -0.886 5.886 16 Si 0.948 3.052 17 H -0.246 1.246 18 H -0.268 1.268 19 H -0.282 1.282 20 C 0.119 3.881 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.106 4.106 24 C -0.119 4.119 25 O -0.387 6.387 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.273 0.727 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -3.597 -3.658 7.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.000 4.000 4 H 0.081 0.919 5 C -0.182 4.182 6 C -0.157 4.157 7 C 0.010 3.990 8 H 0.112 0.888 9 C 0.287 3.713 10 O -0.530 6.530 11 N -0.162 5.162 12 C -0.469 4.469 13 H 0.109 0.891 14 C -0.183 4.183 15 N -0.521 5.521 16 Si 0.771 3.229 17 H -0.169 1.169 18 H -0.193 1.193 19 H -0.207 1.207 20 C 0.016 3.984 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.158 4.158 25 O -0.307 6.307 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.384 -3.914 -3.165 7.370 hybrid contribution -0.291 0.686 -0.673 1.004 sum 5.093 -3.228 -3.838 7.147 Atomic orbital electron populations 1.21716 0.95455 1.02223 1.01202 1.21592 0.96688 0.92944 1.03422 1.23340 0.95383 0.95365 0.85934 0.91873 1.23065 0.94984 0.98940 1.01189 1.22600 0.95829 0.98055 0.99250 1.22914 0.90750 0.90544 0.94794 0.88774 1.20660 0.80650 0.80034 0.89955 1.90453 1.52820 1.59128 1.50578 1.43480 1.41209 1.25850 1.05668 1.19325 0.91978 1.36651 0.98918 0.89123 1.26283 0.95600 0.93786 1.02636 1.70093 1.10691 1.37284 1.34080 0.85564 0.80322 0.78179 0.78826 1.16888 1.19344 1.20750 1.21829 0.96779 0.95309 0.84513 1.22480 0.97623 0.95360 1.00015 1.22421 0.94527 0.99979 0.97971 1.22219 0.97041 0.93916 1.01193 1.22329 0.94317 0.98626 1.00510 1.89150 1.58574 1.44314 1.38625 0.92169 0.95129 0.90676 0.92129 0.87498 0.89211 0.88142 0.92116 0.89795 0.91733 0.93386 0.91742 0.94736 0.90856 0.90510 0.89559 0.91767 0.91598 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.85 71.98 0.71 -3.32 16 2 C -0.11 -3.01 5.56 30.59 0.17 -2.84 16 3 C 0.06 2.00 3.25 31.10 0.10 2.10 16 4 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 5 C -0.14 -4.46 6.63 31.61 0.21 -4.25 16 6 C -0.12 -4.73 5.52 31.61 0.17 -4.56 16 7 C 0.07 3.45 2.68 30.35 0.08 3.53 16 8 H 0.10 4.95 5.03 -2.38 -0.01 4.94 16 9 C 0.50 27.68 6.53 87.66 0.57 28.26 16 10 O -0.64 -40.14 15.90 15.23 0.24 -39.90 16 11 N -0.44 -22.49 2.34 -609.37 -1.43 -23.91 16 12 C -0.34 -16.33 5.71 84.04 0.48 -15.85 16 13 H 0.09 4.16 7.20 -2.91 -0.02 4.14 16 14 C 0.02 1.02 3.16 84.93 0.27 1.28 16 15 N -0.89 -46.44 11.73 21.66 0.25 -46.19 16 16 Si 0.95 36.57 27.90 68.60 1.91 38.49 16 17 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 18 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 20 C 0.12 5.47 3.29 45.72 0.15 5.62 16 21 C -0.12 -4.92 6.42 31.70 0.20 -4.72 16 22 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 23 C -0.11 -3.15 6.83 31.67 0.22 -2.93 16 24 C -0.12 -4.36 6.26 31.32 0.20 -4.17 16 25 O -0.39 -18.68 10.40 -130.66 -1.36 -20.04 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 1.01 8.01 -2.39 -0.02 0.99 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 2.44 7.87 -2.39 -0.02 2.42 16 32 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.06 2.48 7.87 -2.39 -0.02 2.46 16 34 H 0.08 3.20 5.55 -2.38 -0.01 3.19 16 35 H 0.27 13.57 8.32 -92.71 -0.77 12.80 16 36 H 0.05 2.44 6.94 -2.38 -0.02 2.42 16 37 H 0.06 3.08 7.07 -2.39 -0.02 3.06 16 38 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 2.37 6.87 -2.39 -0.02 2.35 16 Total: -1.00 -66.65 336.61 4.34 -62.31 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.96 Total: 34.33 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 3.75 Total: -5.09 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.17 Total: -70.10 kcal Atomic # 8 Polarization: -58.82 SS G_CDS: -1.12 Total: -59.94 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 1.91 Total: 38.49 kcal Total: -66.65 4.34 -62.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408245641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.329 kcal (2) G-P(sol) polarization free energy of solvation -66.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds