Wall clock time and date at job start Tue Mar 31 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47111 * 2 1 4 4 H 1.09001 * 109.81637 * 305.88559 * 3 2 1 5 5 C 1.54382 * 109.83004 * 184.99920 * 3 2 1 6 6 C 1.55306 * 102.25010 * 219.03662 * 5 3 2 7 7 C 1.54947 * 100.94273 * 34.13337 * 6 5 3 8 8 H 1.08997 * 110.31052 * 82.57088 * 7 6 5 9 9 C 1.50697 * 110.30758 * 204.64397 * 7 6 5 10 10 O 1.21293 * 120.00155 * 115.77714 * 9 7 6 11 11 N 1.34780 * 119.99661 * 295.77297 * 9 7 6 12 12 C 1.37096 * 120.00236 * 354.62894 * 11 9 7 13 13 H 1.07999 * 120.00038 * 129.01413 * 12 11 9 14 14 C 1.38954 * 119.99456 * 309.00822 * 12 11 9 15 15 N 1.31404 * 120.00598 * 340.65094 * 14 12 11 16 16 Si 1.86803 * 119.99287 * 160.65096 * 14 12 11 17 17 H 1.48496 * 109.47052 * 269.99794 * 16 14 12 18 18 H 1.48498 * 109.47643 * 30.00051 * 16 14 12 19 19 H 1.48502 * 109.46900 * 150.00018 * 16 14 12 20 20 C 1.46505 * 120.00019 * 174.62647 * 11 9 7 21 21 C 1.54262 * 110.03190 * 237.90978 * 20 11 9 22 22 C 1.54968 * 104.15934 * 217.13497 * 21 20 11 23 23 C 1.54893 * 102.77692 * 37.88492 * 22 21 20 24 24 C 1.53873 * 110.03236 * 120.68739 * 20 11 9 25 25 O 1.43237 * 109.90522 * 66.81515 * 3 2 1 26 26 H 1.09007 * 109.46781 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47349 * 299.99945 * 1 2 3 28 28 H 1.08991 * 109.47086 * 60.00530 * 1 2 3 29 29 H 1.08995 * 109.47742 * 239.99435 * 2 1 3 30 30 H 1.09005 * 109.47133 * 119.99453 * 2 1 3 31 31 H 1.09001 * 110.84807 * 100.84701 * 5 3 2 32 32 H 1.09000 * 110.84924 * 337.22299 * 5 3 2 33 33 H 1.09007 * 111.12347 * 276.21697 * 6 5 3 34 34 H 1.08999 * 111.12647 * 152.05712 * 6 5 3 35 35 H 0.96995 * 120.00353 * 177.11477 * 15 14 12 36 36 H 1.08999 * 110.01518 * 359.30084 * 20 11 9 37 37 H 1.08997 * 110.48981 * 335.78316 * 21 20 11 38 38 H 1.09004 * 110.48500 * 98.42830 * 21 20 11 39 39 H 1.08999 * 110.71818 * 279.57340 * 22 21 20 40 40 H 1.08995 * 110.76888 * 156.22247 * 22 21 20 41 41 H 1.08990 * 110.48591 * 203.40634 * 23 22 21 42 42 H 1.09003 * 110.59172 * 80.82104 * 23 22 21 43 43 H 1.08996 * 110.03502 * 238.57052 * 24 20 11 44 44 H 1.09001 * 110.03476 * 359.95775 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9913 -0.8308 5 6 3.5786 1.4540 -0.1266 6 6 3.9796 2.6071 0.8335 7 6 2.8991 2.4622 1.9346 8 1 3.1871 1.6900 2.6480 9 6 2.6940 3.7767 2.6424 10 8 1.6254 4.3455 2.5676 11 7 3.6982 4.3203 3.3585 12 6 4.8678 3.6272 3.5347 13 1 5.8139 4.1003 3.3169 14 6 4.8360 2.3161 3.9938 15 7 3.7689 1.8619 4.6117 16 14 6.3102 1.1990 3.7323 17 1 6.1680 0.4868 2.4371 18 1 7.5518 2.0136 3.7156 19 1 6.3828 0.2087 4.8365 20 6 3.5397 5.6519 3.9485 21 6 4.6474 6.5935 3.4328 22 6 4.9989 7.4729 4.6595 23 6 4.9057 6.4710 5.8371 24 6 3.7035 5.5741 5.4766 25 8 1.7027 2.0791 1.2380 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.8820 1.6776 -1.1493 32 1 4.0024 0.5067 0.2067 33 1 3.9072 3.5748 0.3370 34 1 4.9786 2.4501 1.2403 35 1 3.7301 0.9351 4.8950 36 1 2.5591 6.0566 3.6982 37 1 5.5174 6.0201 3.1129 38 1 4.2739 7.2100 2.6151 39 1 4.2728 8.2771 4.7782 40 1 6.0090 7.8728 4.5716 41 1 4.7211 6.9984 6.7729 42 1 5.8170 5.8772 5.9083 43 1 2.8027 5.9420 5.9678 44 1 3.9000 4.5456 5.7792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408245642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:34 Heat of formation + Delta-G solvation = -93.836430 kcal Electronic energy + Delta-G solvation = -24137.646005 eV Core-core repulsion = 20861.335653 eV Total energy + Delta-G solvation = -3276.310352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52224 -38.23961 -36.35277 -34.22607 -33.00925 -31.46811 -31.31603 -28.24755 -27.93554 -26.67590 -24.88667 -23.43695 -21.18674 -20.62635 -20.11715 -19.32697 -19.22469 -17.00956 -16.06197 -15.50878 -15.37166 -15.03275 -14.53853 -14.29848 -13.87496 -13.58111 -13.45529 -13.08295 -12.76511 -12.63736 -12.34056 -12.24639 -11.76636 -11.36683 -11.30074 -11.18541 -11.07436 -10.92008 -10.74205 -10.64442 -10.55956 -10.49374 -10.39715 -10.32387 -10.24626 -10.14864 -9.89463 -9.63390 -9.16170 -8.73672 -7.90013 -7.30705 -6.45265 -4.25019 3.04141 3.14866 3.16224 3.94960 4.12030 4.33687 4.83582 4.95145 5.09660 5.17696 5.33900 5.39456 5.47195 5.51186 5.62459 5.65621 5.75907 5.96904 6.07399 6.14507 6.15995 6.20628 6.21478 6.22525 6.25896 6.32312 6.36584 6.43141 6.50441 6.55005 6.58376 6.62459 6.67012 6.70447 6.76357 6.96641 7.06230 7.12166 7.30641 7.39237 7.86228 7.97057 8.63720 8.88997 9.61854 10.04687 10.57997 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.006907 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.733426 B = 4052.599197 C = 4860.161631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.079 3.921 4 H 0.069 0.931 5 C -0.155 4.155 6 C -0.130 4.130 7 C 0.073 3.927 8 H 0.118 0.882 9 C 0.519 3.481 10 O -0.595 6.595 11 N -0.449 5.449 12 C -0.329 4.329 13 H 0.084 0.916 14 C 0.045 3.955 15 N -0.850 5.850 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.266 1.266 19 H -0.282 1.282 20 C 0.136 3.864 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.125 4.125 25 O -0.359 6.359 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.272 0.728 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 -0.047 -5.012 5.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.020 3.980 4 H 0.087 0.913 5 C -0.192 4.192 6 C -0.168 4.168 7 C 0.013 3.987 8 H 0.135 0.865 9 C 0.308 3.692 10 O -0.479 6.479 11 N -0.171 5.171 12 C -0.457 4.457 13 H 0.101 0.899 14 C -0.161 4.161 15 N -0.486 5.486 16 Si 0.720 3.280 17 H -0.196 1.196 18 H -0.190 1.190 19 H -0.208 1.208 20 C 0.031 3.969 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.163 4.163 25 O -0.278 6.278 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.391 0.121 -4.826 5.387 hybrid contribution 0.982 -0.825 0.000 1.283 sum 3.373 -0.704 -4.826 5.930 Atomic orbital electron populations 1.21685 0.95630 1.00708 1.02378 1.21894 0.96739 0.96517 1.01771 1.22677 0.94020 0.92885 0.88387 0.91274 1.23209 0.95661 0.99975 1.00382 1.23049 1.00850 0.97767 0.95159 1.23205 0.83232 0.97685 0.94567 0.86474 1.20129 0.84060 0.85787 0.79177 1.90502 1.26809 1.64487 1.66101 1.43294 1.14497 1.14454 1.44849 1.19160 0.86046 0.95503 1.44968 0.89887 1.25553 0.97319 0.99426 0.93791 1.70028 1.29492 1.16461 1.32603 0.86440 0.82421 0.80559 0.78568 1.19617 1.19022 1.20759 1.21534 0.97851 0.85234 0.92239 1.22673 1.00080 0.97185 0.96775 1.22435 1.00074 0.97475 0.95897 1.22264 0.99408 0.96977 0.96762 1.22372 0.96275 1.01757 0.95898 1.88483 1.29775 1.77592 1.31926 0.93466 0.91698 0.93224 0.91784 0.91599 0.90780 0.90894 0.91366 0.88850 0.91754 0.90493 0.90489 0.92869 0.92335 0.92465 0.93074 0.91720 0.93463 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.83 37.16 0.37 -1.77 16 2 C -0.13 -2.00 5.51 -26.73 -0.15 -2.15 16 3 C 0.08 1.40 3.51 -26.00 -0.09 1.31 16 4 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 5 C -0.15 -2.54 6.54 -24.78 -0.16 -2.70 16 6 C -0.13 -2.58 5.81 -24.48 -0.14 -2.72 16 7 C 0.07 1.73 2.83 -26.86 -0.08 1.65 16 8 H 0.12 2.96 4.77 -51.93 -0.25 2.71 16 9 C 0.52 13.75 6.43 -10.99 -0.07 13.68 16 10 O -0.60 -17.55 15.91 -13.81 -0.22 -17.77 16 11 N -0.45 -10.96 2.38 -106.54 -0.25 -11.21 16 12 C -0.33 -7.75 5.91 -14.93 -0.09 -7.84 16 13 H 0.08 1.90 6.72 -52.49 -0.35 1.55 16 14 C 0.05 1.08 3.24 -17.47 -0.06 1.02 16 15 N -0.85 -21.83 11.38 55.50 0.63 -21.20 16 16 Si 0.89 18.24 28.67 -169.99 -4.87 13.37 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 20 C 0.14 2.99 3.29 -66.81 -0.22 2.77 16 21 C -0.13 -2.36 6.42 -25.03 -0.16 -2.53 16 22 C -0.12 -1.88 6.91 -24.69 -0.17 -2.06 16 23 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 24 C -0.12 -2.56 6.27 -25.61 -0.16 -2.73 16 25 O -0.36 -8.38 9.91 -54.58 -0.54 -8.92 16 26 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.06 1.09 7.90 -51.93 -0.41 0.68 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 33 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 34 H 0.09 1.83 6.07 -51.93 -0.32 1.52 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.08 1.83 6.96 -51.93 -0.36 1.47 16 37 H 0.08 1.47 6.37 -51.93 -0.33 1.13 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 2.15 7.34 -51.93 -0.38 1.77 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -28.81 336.94 -8.96 -37.77 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.43 Total: 9.07 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.35 Total: -6.18 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.38 Total: -32.42 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.76 Total: -26.69 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.87 Total: 13.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.81 -8.96 -37.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408245642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.063 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds