Wall clock time and date at job start Tue Mar 31 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47460 * 2 1 4 4 H 1.09003 * 110.41549 * 52.69457 * 3 2 1 5 5 C 1.54481 * 110.37398 * 174.99944 * 3 2 1 6 6 C 1.54510 * 104.06335 * 142.81316 * 5 3 2 7 7 C 1.54483 * 104.06302 * 0.02562 * 6 5 3 8 8 H 1.08996 * 110.37591 * 94.96005 * 7 6 5 9 9 C 1.50703 * 110.37301 * 217.19036 * 7 6 5 10 10 O 1.21292 * 120.00080 * 114.99705 * 9 7 6 11 11 N 1.34771 * 119.99734 * 294.99733 * 9 7 6 12 12 C 1.37101 * 120.00176 * 179.97438 * 11 9 7 13 13 H 1.07997 * 120.00540 * 141.44386 * 12 11 9 14 14 C 1.38957 * 119.99512 * 321.44957 * 12 11 9 15 15 N 1.31406 * 119.99719 * 157.67928 * 14 12 11 16 16 Si 1.86796 * 120.00146 * 337.67609 * 14 12 11 17 17 H 1.48506 * 109.47185 * 93.47732 * 16 14 12 18 18 H 1.48498 * 109.47162 * 213.47724 * 16 14 12 19 19 H 1.48503 * 109.47091 * 333.47744 * 16 14 12 20 20 C 1.46505 * 120.00383 * 359.97438 * 11 9 7 21 21 C 1.54269 * 110.48519 * 114.45492 * 20 11 9 22 22 C 1.53872 * 106.59305 * 142.29283 * 21 20 11 23 23 C 1.54270 * 106.64377 * 359.97414 * 22 21 20 24 24 C 1.54887 * 110.48872 * 229.23381 * 20 11 9 25 25 O 1.44422 * 110.37637 * 290.38309 * 3 2 1 26 26 H 1.08998 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47089 * 299.99866 * 1 2 3 28 28 H 1.09003 * 109.47026 * 59.99227 * 1 2 3 29 29 H 1.09010 * 109.46799 * 240.00377 * 2 1 3 30 30 H 1.08997 * 109.47455 * 120.00775 * 2 1 3 31 31 H 1.09001 * 110.51061 * 24.17061 * 5 3 2 32 32 H 1.08993 * 110.51305 * 261.45907 * 5 3 2 33 33 H 1.08994 * 110.51455 * 241.36045 * 6 5 3 34 34 H 1.09001 * 110.51201 * 118.64388 * 6 5 3 35 35 H 0.97001 * 120.00177 * 179.97438 * 15 14 12 36 36 H 1.09003 * 110.43006 * 351.91599 * 20 11 9 37 37 H 1.08998 * 110.03354 * 23.01058 * 21 20 11 38 38 H 1.08994 * 110.07156 * 261.59604 * 21 20 11 39 39 H 1.09004 * 110.03256 * 119.29005 * 22 21 20 40 40 H 1.09007 * 110.03139 * 240.66242 * 22 21 20 41 41 H 1.08999 * 110.48039 * 95.09593 * 23 22 21 42 42 H 1.08998 * 110.48349 * 217.73814 * 23 22 21 43 43 H 1.08997 * 110.75336 * 321.69630 * 24 20 11 44 44 H 1.09005 * 110.75546 * 84.87637 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5831 2.0073 0.8126 5 6 3.5795 1.4685 0.1262 6 6 4.0108 2.6419 -0.7818 7 6 2.6809 3.1864 -1.3487 8 1 2.3236 4.0199 -0.7440 9 6 2.8588 3.6175 -2.7817 10 8 2.2696 3.0353 -3.6678 11 7 3.6727 4.6498 -3.0787 12 6 3.8350 5.0417 -4.3824 13 1 3.9111 6.0913 -4.6254 14 6 3.9016 4.0884 -5.3912 15 7 3.6188 4.4223 -6.6303 16 14 4.3933 2.3325 -4.9860 17 1 3.1739 1.5208 -4.7418 18 1 5.1520 1.7556 -6.1247 19 1 5.2447 2.3251 -3.7694 20 6 4.3840 5.3533 -2.0085 21 6 5.9064 5.1432 -2.1431 22 6 6.5700 6.4757 -1.7535 23 6 5.4285 7.4500 -1.3962 24 6 4.1979 6.8845 -2.1492 25 8 1.7631 2.0737 -1.2691 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.0079 0.5319 -0.2307 32 1 3.8749 1.6558 1.1585 33 1 4.6523 2.2855 -1.5876 34 1 4.5195 3.4093 -0.1983 35 1 3.6656 3.7569 -7.3347 36 1 4.0367 5.0129 -1.0330 37 1 6.1584 4.8874 -3.1722 38 1 6.2356 4.3514 -1.4703 39 1 7.2209 6.3306 -0.8912 40 1 7.1450 6.8661 -2.5933 41 1 5.2504 7.4508 -0.3208 42 1 5.6619 8.4556 -1.7460 43 1 4.2175 7.1812 -3.1978 44 1 3.2702 7.2061 -1.6756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408245644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:39 Heat of formation + Delta-G solvation = -78.589593 kcal Electronic energy + Delta-G solvation = -24156.751240 eV Core-core repulsion = 20881.102041 eV Total energy + Delta-G solvation = -3275.649199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04497 -38.47177 -36.92338 -33.65447 -33.44394 -32.16009 -31.53361 -28.62183 -28.20727 -27.11514 -25.15232 -23.27397 -21.64367 -20.87313 -20.29909 -20.07011 -19.15404 -17.00792 -16.58514 -16.13104 -15.83871 -15.13548 -14.81294 -14.28737 -14.02844 -13.65041 -13.53179 -13.39264 -13.18439 -12.91703 -12.86112 -12.39097 -12.11560 -11.82411 -11.53688 -11.43105 -11.33391 -11.21850 -10.86071 -10.85488 -10.75575 -10.61980 -10.59570 -10.44678 -10.14353 -9.96893 -9.94984 -9.72974 -9.47359 -8.42227 -8.32175 -7.54456 -6.14268 -3.86068 3.31428 3.49521 3.74792 3.76933 3.96387 4.54233 4.62277 4.70662 4.82949 5.00743 5.05486 5.11690 5.15060 5.20284 5.26949 5.34660 5.39924 5.43179 5.60638 5.63419 5.74582 5.84079 5.87746 5.89814 5.91437 5.95152 6.00039 6.04980 6.06687 6.09740 6.24358 6.27055 6.29172 6.30934 6.38436 6.44443 6.69086 6.82029 6.92083 7.12628 7.89018 8.02491 8.83045 8.98048 9.49067 9.87531 10.89891 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.007783 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.416973 B = 3596.897294 C = 4707.733781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.068 3.932 4 H 0.066 0.934 5 C -0.150 4.150 6 C -0.150 4.150 7 C 0.064 3.936 8 H 0.080 0.920 9 C 0.445 3.555 10 O -0.523 6.523 11 N -0.451 5.451 12 C -0.347 4.347 13 H 0.098 0.902 14 C 0.094 3.906 15 N -0.863 5.863 16 Si 0.905 3.095 17 H -0.247 1.247 18 H -0.312 1.312 19 H -0.282 1.282 20 C 0.125 3.875 21 C -0.135 4.135 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.130 4.130 25 O -0.337 6.337 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.271 0.729 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -1.726 16.612 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.010 3.990 4 H 0.084 0.916 5 C -0.187 4.187 6 C -0.188 4.188 7 C 0.003 3.997 8 H 0.098 0.902 9 C 0.234 3.766 10 O -0.404 6.404 11 N -0.173 5.173 12 C -0.472 4.472 13 H 0.116 0.884 14 C -0.116 4.116 15 N -0.498 5.498 16 Si 0.737 3.263 17 H -0.173 1.173 18 H -0.242 1.242 19 H -0.207 1.207 20 C 0.020 3.980 21 C -0.174 4.174 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.168 4.168 25 O -0.255 6.255 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.260 -2.121 15.795 16.096 hybrid contribution 0.552 -0.717 0.333 0.964 sum 2.812 -2.838 16.128 16.615 Atomic orbital electron populations 1.21729 0.95323 1.01325 1.02403 1.21562 0.96765 0.94590 1.02452 1.23074 0.93959 0.94447 0.87553 0.91581 1.23005 0.96200 0.99489 1.00051 1.23113 0.97825 0.98072 0.99795 1.22845 0.89399 0.90591 0.96894 0.90199 1.19870 0.82714 0.85148 0.88842 1.90564 1.48110 1.54266 1.47447 1.43578 1.37884 1.29274 1.06586 1.18690 1.54836 0.94465 0.79181 0.88407 1.25253 0.92514 0.99493 0.94307 1.69772 1.42521 1.36245 1.01287 0.86552 0.77884 0.85579 0.76276 1.17313 1.24245 1.20744 1.22065 0.92011 0.92990 0.90917 1.22513 0.95272 0.96403 1.03212 1.22047 0.97508 0.95680 1.00382 1.22302 0.95680 0.98554 0.99419 1.22799 0.96765 0.94935 1.02319 1.89304 1.57095 1.43032 1.36085 0.92964 0.93050 0.91656 0.90997 0.91026 0.90673 0.90613 0.90141 0.89892 0.91908 0.90663 0.89689 0.92826 0.92686 0.91935 0.92305 0.92013 0.89355 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.85 37.16 0.37 -1.46 16 2 C -0.12 -1.46 5.56 -26.73 -0.15 -1.61 16 3 C 0.07 0.97 3.25 -25.96 -0.08 0.89 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.15 -1.95 6.63 -25.16 -0.17 -2.12 16 6 C -0.15 -2.39 5.47 -25.16 -0.14 -2.53 16 7 C 0.06 1.24 2.76 -27.10 -0.07 1.17 16 8 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 9 C 0.45 11.02 5.26 -10.99 -0.06 10.96 16 10 O -0.52 -15.47 11.56 -13.68 -0.16 -15.63 16 11 N -0.45 -10.67 2.25 -105.97 -0.24 -10.91 16 12 C -0.35 -9.59 8.43 -14.93 -0.13 -9.72 16 13 H 0.10 2.79 6.40 -52.49 -0.34 2.46 16 14 C 0.09 2.78 4.78 -17.47 -0.08 2.70 16 15 N -0.86 -26.70 13.96 55.50 0.77 -25.93 16 16 Si 0.91 24.84 24.83 -169.99 -4.22 20.62 16 17 H -0.25 -7.31 6.09 56.52 0.34 -6.96 16 18 H -0.31 -8.45 7.11 56.52 0.40 -8.05 16 19 H -0.28 -7.25 6.58 56.52 0.37 -6.88 16 20 C 0.12 2.27 2.46 -66.27 -0.16 2.11 16 21 C -0.14 -2.29 6.44 -25.61 -0.16 -2.45 16 22 C -0.12 -1.62 6.80 -25.61 -0.17 -1.80 16 23 C -0.12 -1.60 6.84 -25.03 -0.17 -1.77 16 24 C -0.13 -2.16 6.36 -24.70 -0.16 -2.31 16 25 O -0.34 -6.74 10.39 -54.46 -0.57 -7.31 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 29 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.50 7.34 -51.93 -0.38 1.12 16 34 H 0.08 1.09 6.60 -51.93 -0.34 0.74 16 35 H 0.27 7.97 8.31 -40.82 -0.34 7.63 16 36 H 0.08 1.19 4.52 -51.93 -0.23 0.96 16 37 H 0.08 1.72 7.35 -51.93 -0.38 1.34 16 38 H 0.05 0.81 7.85 -51.93 -0.41 0.41 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.70 6.11 -51.93 -0.32 1.38 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -34.08 331.09 -8.25 -42.34 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.49 Total: -0.21 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.34 Total: -7.95 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.54 Total: -36.84 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.72 Total: -22.94 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.22 Total: 20.62 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.08 -8.25 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408245644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.254 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds