Wall clock time and date at job start Tue Mar 31 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99941 * 2 1 4 4 C 1.53003 * 109.46830 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46992 * 60.00237 * 4 3 2 6 6 C 1.53005 * 109.47241 * 300.00231 * 4 3 2 7 7 C 1.52998 * 109.46906 * 180.02562 * 4 3 2 8 8 N 1.46899 * 109.47167 * 177.85535 * 7 4 3 9 9 C 1.46907 * 111.00020 * 84.33508 * 8 7 4 10 10 C 1.50701 * 109.47167 * 200.85608 * 9 8 7 11 11 H 1.07999 * 120.00033 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99741 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99994 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99879 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47423 * 59.99827 * 14 12 10 16 16 H 1.48497 * 109.47270 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46880 * 299.99816 * 14 12 10 18 18 C 1.46893 * 111.00472 * 208.29094 * 8 7 4 19 19 C 1.50705 * 109.46745 * 76.65950 * 18 8 7 20 20 C 1.34512 * 125.78688 * 84.56771 * 19 18 8 21 21 C 1.41390 * 106.83972 * 179.97438 * 20 19 18 22 22 C 1.34509 * 106.83853 * 359.97438 * 21 20 19 23 23 O 1.34299 * 125.79140 * 264.25434 * 19 18 8 24 24 H 1.09010 * 109.46533 * 60.00162 * 1 2 3 25 25 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47433 * 300.00323 * 1 2 3 27 27 H 1.08997 * 109.46889 * 59.99863 * 3 2 1 28 28 H 1.08997 * 109.47555 * 299.99578 * 3 2 1 29 29 H 1.09005 * 109.47085 * 191.75861 * 5 4 3 30 30 H 1.09004 * 109.47308 * 311.75021 * 5 4 3 31 31 H 1.08992 * 109.47487 * 71.75776 * 5 4 3 32 32 H 1.09008 * 109.46561 * 304.66302 * 6 4 3 33 33 H 1.09001 * 109.47145 * 64.65893 * 6 4 3 34 34 H 1.09002 * 109.47181 * 184.66400 * 6 4 3 35 35 H 1.08999 * 109.47327 * 57.85441 * 7 4 3 36 36 H 1.09002 * 109.47043 * 297.85255 * 7 4 3 37 37 H 1.08999 * 109.46829 * 320.85915 * 9 8 7 38 38 H 1.08999 * 109.46490 * 80.85844 * 9 8 7 39 39 H 0.97003 * 119.99394 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.47204 * 316.66608 * 18 8 7 41 41 H 1.09001 * 109.47628 * 196.66144 * 18 8 7 42 42 H 1.07997 * 126.58471 * 0.03358 * 20 19 18 43 43 H 1.07997 * 126.57762 * 179.97438 * 21 20 19 44 44 H 1.08007 * 125.78825 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9865 0.4254 1.2502 7 6 4.1578 2.5823 0.0013 8 7 5.6213 2.4667 0.0537 9 6 6.1824 2.2699 -1.2896 10 6 7.5548 1.6579 -1.1761 11 1 7.9688 1.4369 -0.2034 12 6 8.2821 1.3803 -2.3142 13 7 7.7778 1.6490 -3.4987 14 14 9.9830 0.6211 -2.1736 15 1 9.8846 -0.6894 -1.4820 16 1 10.5507 0.4234 -3.5314 17 1 10.8662 1.5264 -1.3953 18 6 6.2190 3.6386 0.7073 19 6 6.0306 3.5324 2.1988 20 6 6.8290 2.8591 3.0465 21 6 6.2849 3.0253 4.3409 22 6 5.1870 3.7908 4.2067 23 8 5.0406 4.0989 2.9077 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 5.0391 0.1562 -1.1493 30 1 3.3900 -0.4799 -1.3593 31 1 3.8552 1.0577 -2.1259 32 1 3.5940 0.9215 2.1380 33 1 3.6110 -0.5970 1.2095 34 1 5.0755 0.4112 1.2934 35 1 3.8057 3.1364 0.8714 36 1 3.8674 3.1097 -0.9073 37 1 5.5340 1.6049 -1.8603 38 1 6.2542 3.2315 -1.7977 39 1 8.2896 1.4540 -4.2992 40 1 5.7338 4.5444 0.3434 41 1 7.2837 3.6793 0.4775 42 1 7.7159 2.2996 2.7882 43 1 6.6759 2.6162 5.2607 44 1 4.5359 4.1073 5.0082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426054575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:13 Heat of formation + Delta-G solvation = -25.852883 kcal Electronic energy + Delta-G solvation = -23400.979576 eV Core-core repulsion = 20127.617212 eV Total energy + Delta-G solvation = -3273.362364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12738 -38.70860 -37.01496 -34.15683 -32.66679 -32.42489 -29.95757 -27.64430 -27.20324 -26.49829 -25.72012 -25.12777 -23.44369 -21.31874 -20.86794 -19.83652 -18.46057 -16.95459 -16.37386 -16.12080 -15.74366 -15.64176 -15.26042 -14.73517 -14.33718 -13.89858 -13.86169 -13.45949 -12.93770 -12.72048 -12.44966 -12.29986 -12.20405 -12.08603 -11.89358 -11.45999 -11.41704 -11.25642 -11.05440 -10.89482 -10.67463 -10.42605 -10.20654 -10.10808 -9.84942 -9.74961 -9.49528 -9.46553 -9.11104 -8.37602 -8.02986 -7.30092 -6.00982 -4.01726 2.13556 3.04872 3.34751 3.39342 3.40570 3.42413 3.91421 4.44575 4.99169 5.13907 5.22258 5.30043 5.34719 5.37516 5.40378 5.44567 5.47754 5.53849 5.65170 5.72815 5.78704 5.92113 6.03537 6.17790 6.21041 6.26358 6.33242 6.42127 6.51599 6.54977 6.63620 6.73743 6.83491 6.93299 7.10483 7.15622 7.23986 7.33805 7.38351 7.59232 7.83465 8.09838 8.15886 8.52264 9.05839 9.62214 11.09141 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.007005 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.044374 B = 3996.285496 C = 5964.377430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.072 3.928 4 C -0.048 4.048 5 C -0.139 4.139 6 C -0.120 4.120 7 C 0.064 3.936 8 N -0.522 5.522 9 C 0.172 3.828 10 C -0.504 4.504 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.894 3.106 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.138 3.862 19 C 0.016 3.984 20 C -0.200 4.200 21 C -0.211 4.211 22 C -0.063 4.063 23 O -0.183 6.183 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.062 0.938 38 H -0.010 1.010 39 H 0.261 0.739 40 H 0.037 0.963 41 H 0.112 0.888 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 2.048 10.467 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.005 4.005 4 C -0.049 4.049 5 C -0.195 4.195 6 C -0.178 4.178 7 C -0.064 4.064 8 N -0.246 5.246 9 C 0.048 3.952 10 C -0.543 4.543 11 H 0.081 0.919 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.204 1.204 18 C 0.010 3.990 19 C -0.034 4.034 20 C -0.220 4.220 21 C -0.231 4.231 22 C -0.130 4.130 23 O -0.080 6.080 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.008 0.992 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.130 0.870 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.173 1.637 10.396 14.637 hybrid contribution 0.560 0.450 -0.245 0.759 sum -9.613 2.087 10.151 14.135 Atomic orbital electron populations 1.22685 0.82057 1.02241 0.99516 1.87907 1.18642 1.28251 1.95257 1.22600 0.94629 0.84044 0.99203 1.20428 0.90411 0.96179 0.97871 1.22024 1.03213 0.99056 0.95243 1.21599 1.02943 0.98485 0.94727 1.22035 0.90161 0.94880 0.99370 1.61920 1.02132 1.36203 1.24360 1.20319 0.96093 0.96375 0.82370 1.21113 1.00171 1.40299 0.92703 0.91938 1.24949 0.98174 0.96009 0.95299 1.69940 1.37933 1.48506 0.97424 0.86620 0.84342 0.79891 0.76901 1.20206 1.21505 1.20373 1.20535 1.02306 0.92752 0.83417 1.22789 0.88125 0.97688 0.94814 1.21534 1.03559 1.05006 0.91916 1.21780 0.98341 1.04191 0.98761 1.23787 1.01245 1.03952 0.84047 1.83996 1.45314 1.60171 1.18504 0.94452 0.90021 0.94568 0.93990 0.93817 0.89563 0.93381 0.93383 0.94678 0.93474 0.90492 0.92398 0.95049 0.92053 0.99189 0.92932 0.94531 0.86963 0.83582 0.84193 0.79037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.78 9.26 -35.23 -0.33 -6.10 16 3 C 0.07 1.08 4.81 37.16 0.18 1.26 16 4 C -0.05 -0.83 0.68 -154.51 -0.10 -0.94 16 5 C -0.14 -2.64 6.82 37.16 0.25 -2.39 16 6 C -0.12 -2.10 8.13 37.16 0.30 -1.80 16 7 C 0.06 1.16 3.97 -3.83 -0.02 1.14 16 8 N -0.52 -10.57 3.22 -237.51 -0.76 -11.33 16 9 C 0.17 4.17 3.76 -4.97 -0.02 4.15 16 10 C -0.50 -13.36 8.58 -34.44 -0.30 -13.66 16 11 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 14 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.14 2.59 5.26 -4.98 -0.03 2.56 16 19 C 0.02 0.29 6.22 -35.62 -0.22 0.06 16 20 C -0.20 -3.35 10.81 -39.70 -0.43 -3.78 16 21 C -0.21 -3.00 10.91 -39.70 -0.43 -3.43 16 22 C -0.06 -0.84 12.09 29.41 0.36 -0.49 16 23 O -0.18 -2.99 10.22 5.72 0.06 -2.93 16 24 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.90 6.44 -51.93 -0.33 1.56 16 30 H 0.05 0.88 7.36 -51.93 -0.38 0.49 16 31 H 0.05 0.94 7.25 -51.93 -0.38 0.56 16 32 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.05 0.81 7.82 -51.93 -0.41 0.40 16 34 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 35 H 0.06 1.00 6.91 -51.93 -0.36 0.64 16 36 H 0.03 0.57 7.87 -51.93 -0.41 0.16 16 37 H 0.06 1.55 3.91 -51.93 -0.20 1.34 16 38 H -0.01 -0.26 7.98 -51.93 -0.41 -0.67 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.04 0.66 7.99 -51.93 -0.41 0.24 16 41 H 0.11 2.23 7.34 -51.93 -0.38 1.85 16 42 H 0.15 2.44 8.06 -52.49 -0.42 2.02 16 43 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.19 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -28.98 352.76 -6.85 -35.84 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.41 Total: 2.45 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 0.56 Total: -14.38 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.03 Total: -36.38 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.27 Total: -9.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.98 -6.85 -35.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426054575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.983 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds