Wall clock time and date at job start Tue Mar 31 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47539 * 2 1 4 4 C 1.53089 * 109.48228 * 239.97542 * 2 1 3 5 5 C 1.53178 * 109.16449 * 182.39255 * 4 2 1 6 6 C 1.50695 * 109.54157 * 176.84791 * 5 4 2 7 7 O 1.21280 * 120.00430 * 332.18385 * 6 5 4 8 8 N 1.34783 * 119.99892 * 152.18533 * 6 5 4 9 9 C 1.46500 * 120.00016 * 185.44774 * 8 6 5 10 10 C 1.52999 * 109.47076 * 176.70134 * 9 8 6 11 11 C 1.50702 * 115.54912 * 54.92247 * 10 9 8 12 12 H 1.07996 * 119.99870 * 219.85999 * 11 10 9 13 13 C 1.37871 * 119.99950 * 39.58888 * 11 10 9 14 14 N 1.31523 * 120.00010 * 7.23735 * 13 11 10 15 15 Si 1.86802 * 120.00237 * 187.23563 * 13 11 10 16 16 H 1.48497 * 109.47007 * 60.00012 * 15 13 11 17 17 H 1.48505 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46733 * 300.00061 * 15 13 11 19 19 C 1.52998 * 117.51730 * 200.62809 * 10 9 8 20 20 C 1.52999 * 117.49613 * 269.25612 * 10 9 8 21 21 C 1.53181 * 109.10502 * 56.93904 * 5 4 2 22 22 C 1.53101 * 109.15557 * 303.14961 * 21 5 4 23 23 H 1.09009 * 109.48292 * 177.50514 * 22 21 5 24 24 C 1.52997 * 109.41984 * 297.48693 * 22 21 5 25 25 O 1.42898 * 109.48973 * 57.47986 * 22 21 5 26 26 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46889 * 300.02289 * 1 2 3 28 28 H 1.09000 * 109.47343 * 60.02260 * 1 2 3 29 29 H 1.09001 * 109.52043 * 62.49137 * 4 2 1 30 30 H 1.08997 * 109.57079 * 302.33315 * 4 2 1 31 31 H 1.08998 * 109.54431 * 297.02862 * 5 4 2 32 32 H 0.96993 * 119.99542 * 5.44838 * 8 6 5 33 33 H 1.09003 * 109.46746 * 56.69972 * 9 8 6 34 34 H 1.09002 * 109.47022 * 296.70577 * 9 8 6 35 35 H 0.97006 * 119.99583 * 184.96186 * 14 13 11 36 36 H 1.09000 * 117.49538 * 214.97050 * 19 10 9 37 37 H 1.08995 * 117.50082 * 359.97438 * 19 10 9 38 38 H 1.08998 * 117.50097 * 359.97280 * 20 10 9 39 39 H 1.09008 * 117.49786 * 145.00069 * 20 10 9 40 40 H 1.09002 * 109.52358 * 62.97082 * 21 5 4 41 41 H 1.09000 * 109.51737 * 183.15582 * 21 5 4 42 42 H 1.08998 * 109.47625 * 179.97438 * 24 22 21 43 43 H 1.08999 * 109.47188 * 299.99865 * 24 22 21 44 44 H 1.09003 * 109.46977 * 59.98972 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7704 -1.2124 6 6 4.0800 -1.5470 -2.3993 7 8 3.3918 -2.4120 -2.8984 8 7 5.3000 -1.2804 -2.9063 9 6 5.7469 -1.9498 -4.1305 10 6 7.1217 -1.4124 -4.5328 11 6 8.1894 -1.4999 -3.4729 12 1 8.8899 -0.6881 -3.3437 13 6 8.2684 -2.6138 -2.6643 14 7 7.5076 -3.6586 -2.9080 15 14 9.4560 -2.6393 -1.2226 16 1 9.1195 -1.5383 -0.2847 17 1 9.3490 -3.9410 -0.5160 18 1 10.8432 -2.4585 -1.7209 19 6 7.5546 -1.5972 -5.9886 20 6 7.1612 -0.2097 -5.4777 21 6 4.0198 -1.4584 0.0807 22 6 3.4310 -0.7089 1.2788 23 1 3.7104 -1.2199 2.2003 24 6 3.9761 0.7205 1.3027 25 8 2.0069 -0.6741 1.1664 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 1.7147 -0.1842 -2.1398 30 1 1.6445 -1.7374 -1.2720 31 1 3.9688 0.2440 -1.2426 32 1 5.8821 -0.6453 -2.4607 33 1 5.0328 -1.7571 -4.9312 34 1 5.8137 -3.0233 -3.9538 35 1 7.5104 -4.4133 -2.2985 36 1 8.6116 -1.7822 -6.1797 37 1 6.8600 -2.1021 -6.6599 38 1 6.2078 0.1984 -5.8131 39 1 7.9596 0.5182 -5.3328 40 1 3.6650 -2.4890 0.0870 41 1 5.1081 -1.4465 0.1408 42 1 3.5571 1.2550 2.1552 43 1 5.0623 0.6937 1.3884 44 1 3.6969 1.2311 0.3810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431146549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:39 Heat of formation + Delta-G solvation = -79.129094 kcal Electronic energy + Delta-G solvation = -23377.556948 eV Core-core repulsion = 20101.884354 eV Total energy + Delta-G solvation = -3275.672594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22218 -38.42632 -36.68293 -33.61073 -33.25568 -32.95315 -32.20420 -29.55613 -26.65814 -26.33956 -25.45841 -23.32772 -22.42199 -21.26159 -19.67996 -19.35263 -18.95685 -16.96680 -16.29237 -16.09963 -15.83645 -14.93305 -14.79307 -14.48544 -14.41223 -14.07050 -13.61138 -13.49694 -12.99044 -12.73590 -12.63124 -12.38083 -12.10242 -11.96864 -11.76357 -11.67118 -11.54386 -11.14678 -11.04474 -10.99118 -10.86453 -10.57136 -10.55529 -10.29995 -10.11524 -9.68499 -9.53333 -9.18114 -8.86939 -8.81350 -8.27520 -7.87363 -6.10632 -4.22649 3.18729 3.27381 3.27694 3.37831 3.74928 4.03361 4.27140 4.75690 4.80115 4.88861 4.93924 5.05733 5.12345 5.25366 5.34214 5.35991 5.44116 5.47350 5.52210 5.67693 5.79299 5.82724 5.91813 5.97302 6.00426 6.05526 6.08651 6.22663 6.26810 6.28262 6.45862 6.52475 6.57913 6.67545 6.88224 7.06376 7.24926 7.29834 7.53317 7.56808 7.88151 8.27901 8.51715 8.78205 9.11939 9.40461 10.87462 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.005480 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.149706 B = 5108.569614 C = 5984.040211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.060 0.940 4 C -0.129 4.129 5 C -0.107 4.107 6 C 0.508 3.492 7 O -0.560 6.560 8 N -0.690 5.690 9 C 0.158 3.842 10 C 0.038 3.962 11 C -0.498 4.498 12 H 0.060 0.940 13 C 0.076 3.924 14 N -0.866 5.866 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.193 4.193 20 C -0.211 4.211 21 C -0.138 4.138 22 C 0.091 3.909 23 H 0.103 0.897 24 C -0.188 4.188 25 O -0.375 6.375 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.399 0.601 33 H 0.025 0.975 34 H 0.109 0.891 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 8.366 6.979 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.077 0.923 4 C -0.168 4.168 5 C -0.128 4.128 6 C 0.292 3.708 7 O -0.440 6.440 8 N -0.337 5.337 9 C 0.035 3.965 10 C 0.038 3.962 11 C -0.536 4.536 12 H 0.078 0.922 13 C -0.129 4.129 14 N -0.502 5.502 15 Si 0.716 3.284 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.232 4.232 20 C -0.248 4.248 21 C -0.176 4.176 22 C 0.033 3.967 23 H 0.121 0.879 24 C -0.245 4.245 25 O -0.295 6.295 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.233 0.767 33 H 0.043 0.957 34 H 0.127 0.873 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.173 7.443 6.754 13.607 hybrid contribution 1.338 0.374 0.609 1.516 sum -7.835 7.817 7.363 13.293 Atomic orbital electron populations 1.21748 0.93229 1.02990 1.02078 1.22101 0.94819 0.95255 0.85220 0.92262 1.22051 0.93737 1.03094 0.97878 1.21329 0.96985 1.00046 0.94471 1.20271 0.82199 0.83820 0.84487 1.90623 1.58001 1.33161 1.62201 1.45856 1.15416 1.44582 1.27840 1.21024 0.91801 1.00605 0.83095 1.19169 0.93909 0.94337 0.88834 1.20444 1.13829 1.02859 1.16424 0.92155 1.24949 0.95711 0.94736 0.97498 1.69869 1.38926 1.05651 1.35748 0.86713 0.81741 0.77358 0.82594 1.20123 1.21170 1.20153 1.22888 1.00203 0.98801 1.01305 1.22931 1.00566 0.91760 1.09543 1.22130 1.01809 1.00618 0.93043 1.22143 0.80756 0.95455 0.98343 0.87904 1.22482 1.02142 0.97360 1.02542 1.87953 1.20733 1.77840 1.42972 0.91743 0.92084 0.91182 0.90961 0.89756 0.89521 0.76657 0.95704 0.87301 0.92580 0.90189 0.91535 0.91422 0.90615 0.90359 0.90054 0.91997 0.91139 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 37.16 0.36 -1.09 16 2 C 0.08 1.00 2.94 -26.68 -0.08 0.92 16 3 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 4 C -0.13 -1.83 4.33 -26.59 -0.12 -1.94 16 5 C -0.11 -1.63 2.29 -91.59 -0.21 -1.84 16 6 C 0.51 10.15 6.91 -10.99 -0.08 10.07 16 7 O -0.56 -13.26 16.09 5.56 0.09 -13.17 16 8 N -0.69 -14.32 5.41 -60.29 -0.33 -14.65 16 9 C 0.16 3.70 4.87 -4.04 -0.02 3.68 16 10 C 0.04 0.89 1.92 -155.66 -0.30 0.59 16 11 C -0.50 -12.45 8.30 -34.44 -0.29 -12.74 16 12 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 13 C 0.08 1.92 5.29 -17.82 -0.09 1.82 16 14 N -0.87 -23.14 10.82 55.43 0.60 -22.54 16 15 Si 0.89 19.73 29.55 -169.99 -5.02 14.71 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.19 -4.25 9.96 -26.73 -0.27 -4.52 16 20 C -0.21 -4.34 9.92 -26.73 -0.27 -4.60 16 21 C -0.14 -2.01 4.91 -26.59 -0.13 -2.14 16 22 C 0.09 1.11 3.91 -26.68 -0.10 1.01 16 23 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 24 C -0.19 -1.97 8.65 37.16 0.32 -1.65 16 25 O -0.38 -5.04 10.24 -35.23 -0.36 -5.40 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 31 H 0.09 1.16 6.62 -51.93 -0.34 0.81 16 32 H 0.40 7.83 7.98 -40.82 -0.33 7.51 16 33 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.11 2.94 6.00 -51.93 -0.31 2.63 16 35 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -28.45 346.96 -8.49 -36.94 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.43 Total: 11.30 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -1.27 Total: -12.42 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.27 Total: -37.18 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.27 Total: -18.57 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.45 -8.49 -36.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431146549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.184 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds