Wall clock time and date at job start Tue Mar 31 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47539 * 2 1 4 4 C 1.53089 * 109.48228 * 239.97542 * 2 1 3 5 5 C 1.53178 * 109.16449 * 182.39255 * 4 2 1 6 6 C 1.50695 * 109.54157 * 176.84791 * 5 4 2 7 7 O 1.21280 * 120.00430 * 332.18385 * 6 5 4 8 8 N 1.34783 * 119.99892 * 152.18533 * 6 5 4 9 9 C 1.46500 * 120.00016 * 185.44774 * 8 6 5 10 10 C 1.52999 * 109.47076 * 176.70134 * 9 8 6 11 11 C 1.50702 * 115.54912 * 54.92247 * 10 9 8 12 12 H 1.07996 * 119.99870 * 219.85999 * 11 10 9 13 13 C 1.37871 * 119.99950 * 39.58888 * 11 10 9 14 14 N 1.31523 * 120.00010 * 7.23735 * 13 11 10 15 15 Si 1.86802 * 120.00237 * 187.23563 * 13 11 10 16 16 H 1.48497 * 109.47007 * 60.00012 * 15 13 11 17 17 H 1.48505 * 109.47204 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46733 * 300.00061 * 15 13 11 19 19 C 1.52998 * 117.51730 * 200.62809 * 10 9 8 20 20 C 1.52999 * 117.49613 * 269.25612 * 10 9 8 21 21 C 1.53181 * 109.10502 * 56.93904 * 5 4 2 22 22 C 1.53101 * 109.15557 * 303.14961 * 21 5 4 23 23 H 1.09009 * 109.48292 * 177.50514 * 22 21 5 24 24 C 1.52997 * 109.41984 * 297.48693 * 22 21 5 25 25 O 1.42898 * 109.48973 * 57.47986 * 22 21 5 26 26 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46889 * 300.02289 * 1 2 3 28 28 H 1.09000 * 109.47343 * 60.02260 * 1 2 3 29 29 H 1.09001 * 109.52043 * 62.49137 * 4 2 1 30 30 H 1.08997 * 109.57079 * 302.33315 * 4 2 1 31 31 H 1.08998 * 109.54431 * 297.02862 * 5 4 2 32 32 H 0.96993 * 119.99542 * 5.44838 * 8 6 5 33 33 H 1.09003 * 109.46746 * 56.69972 * 9 8 6 34 34 H 1.09002 * 109.47022 * 296.70577 * 9 8 6 35 35 H 0.97006 * 119.99583 * 184.96186 * 14 13 11 36 36 H 1.09000 * 117.49538 * 214.97050 * 19 10 9 37 37 H 1.08995 * 117.50082 * 359.97438 * 19 10 9 38 38 H 1.08998 * 117.50097 * 359.97280 * 20 10 9 39 39 H 1.09008 * 117.49786 * 145.00069 * 20 10 9 40 40 H 1.09002 * 109.52358 * 62.97082 * 21 5 4 41 41 H 1.09000 * 109.51737 * 183.15582 * 21 5 4 42 42 H 1.08998 * 109.47625 * 179.97438 * 24 22 21 43 43 H 1.08999 * 109.47188 * 299.99865 * 24 22 21 44 44 H 1.09003 * 109.46977 * 59.98972 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7222 -1.2496 5 6 3.5712 -0.7704 -1.2124 6 6 4.0800 -1.5470 -2.3993 7 8 3.3918 -2.4120 -2.8984 8 7 5.3000 -1.2804 -2.9063 9 6 5.7469 -1.9498 -4.1305 10 6 7.1217 -1.4124 -4.5328 11 6 8.1894 -1.4999 -3.4729 12 1 8.8899 -0.6881 -3.3437 13 6 8.2684 -2.6138 -2.6643 14 7 7.5076 -3.6586 -2.9080 15 14 9.4560 -2.6393 -1.2226 16 1 9.1195 -1.5383 -0.2847 17 1 9.3490 -3.9410 -0.5160 18 1 10.8432 -2.4585 -1.7209 19 6 7.5546 -1.5972 -5.9886 20 6 7.1612 -0.2097 -5.4777 21 6 4.0198 -1.4584 0.0807 22 6 3.4310 -0.7089 1.2788 23 1 3.7104 -1.2199 2.2003 24 6 3.9761 0.7205 1.3027 25 8 2.0069 -0.6741 1.1664 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8902 29 1 1.7147 -0.1842 -2.1398 30 1 1.6445 -1.7374 -1.2720 31 1 3.9688 0.2440 -1.2426 32 1 5.8821 -0.6453 -2.4607 33 1 5.0328 -1.7571 -4.9312 34 1 5.8137 -3.0233 -3.9538 35 1 7.5104 -4.4133 -2.2985 36 1 8.6116 -1.7822 -6.1797 37 1 6.8600 -2.1021 -6.6599 38 1 6.2078 0.1984 -5.8131 39 1 7.9596 0.5182 -5.3328 40 1 3.6650 -2.4890 0.0870 41 1 5.1081 -1.4465 0.1408 42 1 3.5571 1.2550 2.1552 43 1 5.0623 0.6937 1.3884 44 1 3.6969 1.2311 0.3810 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431146549.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:39 Heat of formation + Delta-G solvation = -95.930744 kcal Electronic energy + Delta-G solvation = -23378.285522 eV Core-core repulsion = 20101.884354 eV Total energy + Delta-G solvation = -3276.401168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46258 -39.90293 -38.43801 -34.95444 -34.54000 -34.23479 -34.12672 -30.51504 -28.09144 -27.62831 -27.32147 -24.62686 -23.42215 -22.97322 -21.24352 -21.00379 -20.20597 -18.57722 -17.75430 -17.31373 -17.06866 -16.69990 -16.39466 -15.93612 -15.59050 -15.39631 -15.21638 -14.83666 -14.46772 -14.03308 -13.82118 -13.58425 -13.49681 -13.38374 -12.97236 -12.82716 -12.80082 -12.68303 -12.66311 -12.33898 -12.27002 -12.05928 -11.98586 -11.70355 -11.44595 -11.23883 -11.06216 -10.75196 -10.64088 -10.29402 -10.09687 -9.67397 -8.03558 -6.21375 1.42857 1.46055 1.52424 1.78076 2.41394 2.46650 2.83726 3.06041 3.60821 3.65772 3.72273 3.80532 3.90440 4.13108 4.23673 4.26671 4.35472 4.36922 4.46106 4.50859 4.53190 4.64656 4.74929 4.77546 4.79017 4.84815 4.94774 4.98191 5.02150 5.06922 5.11763 5.16061 5.22794 5.29511 5.32644 5.41208 5.51373 5.58254 5.82293 5.91478 6.34377 6.36446 6.76612 6.93909 7.44284 7.49363 8.92099 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.005480 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.149706 B = 5108.569614 C = 5984.040211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.081 0.919 4 C -0.126 4.126 5 C -0.097 4.097 6 C 0.503 3.497 7 O -0.603 6.603 8 N -0.686 5.686 9 C 0.169 3.831 10 C 0.011 3.989 11 C -0.502 4.502 12 H 0.061 0.939 13 C 0.036 3.964 14 N -0.896 5.896 15 Si 0.943 3.057 16 H -0.259 1.259 17 H -0.295 1.295 18 H -0.276 1.276 19 C -0.200 4.200 20 C -0.181 4.181 21 C -0.136 4.136 22 C 0.093 3.907 23 H 0.114 0.886 24 C -0.184 4.184 25 O -0.389 6.389 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.406 0.594 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 11.045 8.159 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.099 0.901 4 C -0.165 4.165 5 C -0.119 4.119 6 C 0.290 3.710 7 O -0.485 6.485 8 N -0.333 5.333 9 C 0.045 3.955 10 C 0.010 3.990 11 C -0.540 4.540 12 H 0.079 0.921 13 C -0.166 4.166 14 N -0.533 5.533 15 Si 0.769 3.231 16 H -0.183 1.183 17 H -0.221 1.221 18 H -0.202 1.202 19 C -0.239 4.239 20 C -0.218 4.218 21 C -0.174 4.174 22 C 0.035 3.965 23 H 0.132 0.868 24 C -0.241 4.241 25 O -0.309 6.309 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.242 0.758 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.106 10.160 7.944 15.788 hybrid contribution 1.323 -0.496 0.164 1.423 sum -7.782 9.663 8.109 14.822 Atomic orbital electron populations 1.21776 0.91850 1.02733 1.03558 1.22223 0.95944 0.95600 0.83451 0.90114 1.22052 0.92699 1.01967 0.99751 1.21352 0.97805 1.00502 0.92206 1.21154 0.81404 0.83354 0.85103 1.90599 1.59026 1.35150 1.63745 1.45795 1.15879 1.44390 1.27259 1.20658 0.92127 0.98638 0.84070 1.19219 0.93436 0.97091 0.89269 1.20661 1.13980 1.02582 1.16744 0.92069 1.25568 0.96911 0.94393 0.99683 1.70051 1.40692 1.06130 1.36422 0.85843 0.79767 0.77271 0.80223 1.18340 1.22110 1.20161 1.22901 1.00072 1.00409 1.00469 1.22925 1.01571 0.90852 1.06414 1.22124 1.01718 0.99563 0.94008 1.22207 0.80299 0.96655 0.97308 0.86803 1.22449 1.02547 0.95733 1.03339 1.87955 1.21270 1.78278 1.43375 0.92920 0.90780 0.89527 0.90256 0.92660 0.86700 0.75847 0.96108 0.91222 0.93353 0.90705 0.91005 0.89695 0.89484 0.93085 0.90294 0.90595 0.90492 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.57 71.98 0.69 -1.88 16 2 C 0.09 1.85 2.94 30.63 0.09 1.94 16 3 H 0.08 1.45 6.34 -2.39 -0.02 1.44 16 4 C -0.13 -3.47 4.33 30.68 0.13 -3.33 16 5 C -0.10 -2.88 2.29 -11.42 -0.03 -2.91 16 6 C 0.50 20.33 6.91 87.65 0.61 20.94 16 7 O -0.60 -29.58 16.09 -3.03 -0.05 -29.63 16 8 N -0.69 -28.53 5.41 -463.05 -2.50 -31.03 16 9 C 0.17 8.07 4.87 86.38 0.42 8.49 16 10 C 0.01 0.49 1.92 -52.93 -0.10 0.38 16 11 C -0.50 -24.77 8.30 25.60 0.21 -24.56 16 12 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 13 C 0.04 1.82 5.29 84.65 0.45 2.27 16 14 N -0.90 -49.02 10.82 21.45 0.23 -48.78 16 15 Si 0.94 40.15 29.55 68.60 2.03 42.17 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 C -0.20 -8.65 9.96 30.59 0.30 -8.34 16 20 C -0.18 -7.04 9.92 30.59 0.30 -6.74 16 21 C -0.14 -3.89 4.91 30.69 0.15 -3.74 16 22 C 0.09 2.09 3.91 30.63 0.12 2.21 16 23 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 24 C -0.18 -3.22 8.65 71.98 0.62 -2.59 16 25 O -0.39 -9.71 10.24 -148.98 -1.53 -11.24 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.83 7.76 -2.39 -0.02 1.82 16 31 H 0.12 2.76 6.62 -2.39 -0.02 2.75 16 32 H 0.41 15.59 7.98 -92.71 -0.74 14.85 16 33 H 0.02 0.98 8.09 -2.39 -0.02 0.96 16 34 H 0.07 3.92 6.00 -2.39 -0.01 3.91 16 35 H 0.26 13.88 8.32 -92.70 -0.77 13.11 16 36 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 37 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.08 3.02 8.14 -2.39 -0.02 3.01 16 39 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.13 4.98 -2.39 -0.01 1.12 16 Total: -1.00 -62.13 346.96 2.39 -59.73 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.24 Total: 36.64 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.97 Total: -17.86 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.27 Total: -79.82 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.57 Total: -40.87 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Total: -62.13 2.39 -59.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431146549.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.197 kcal (2) G-P(sol) polarization free energy of solvation -62.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds