Wall clock time and date at job start Tue Mar 31 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.48301 * 2 1 4 4 C 1.53101 * 109.48101 * 120.02231 * 2 1 3 5 5 C 1.53175 * 109.16394 * 177.59493 * 4 2 1 6 6 C 1.50695 * 109.54343 * 183.15203 * 5 4 2 7 7 O 1.21283 * 120.00175 * 33.57830 * 6 5 4 8 8 N 1.34777 * 120.00010 * 213.58198 * 6 5 4 9 9 C 1.46505 * 119.99989 * 185.04989 * 8 6 5 10 10 C 1.52997 * 109.47121 * 185.18278 * 9 8 6 11 11 C 1.50697 * 115.55367 * 276.71741 * 10 9 8 12 12 H 1.07999 * 120.00445 * 93.46660 * 11 10 9 13 13 C 1.37878 * 119.99622 * 273.46997 * 11 10 9 14 14 N 1.31511 * 120.00174 * 8.54292 * 13 11 10 15 15 Si 1.86802 * 119.99931 * 188.54421 * 13 11 10 16 16 H 1.48500 * 109.47114 * 59.99722 * 15 13 11 17 17 H 1.48499 * 109.47266 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47128 * 300.00006 * 15 13 11 19 19 C 1.53001 * 117.49613 * 131.00231 * 10 9 8 20 20 C 1.52999 * 60.00394 * 252.51165 * 19 10 9 21 21 C 1.53182 * 109.03424 * 303.01942 * 5 4 2 22 22 C 1.53086 * 109.16358 * 56.97886 * 21 5 4 23 23 H 1.09005 * 109.47784 * 182.41268 * 22 21 5 24 24 C 1.53004 * 109.47968 * 62.39086 * 22 21 5 25 25 O 1.42899 * 109.41810 * 302.39267 * 22 21 5 26 26 H 1.09004 * 109.47565 * 299.97784 * 1 2 3 27 27 H 1.09004 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47396 * 59.98019 * 1 2 3 29 29 H 1.09003 * 109.51737 * 297.49592 * 4 2 1 30 30 H 1.09001 * 109.52180 * 57.62188 * 4 2 1 31 31 H 1.08996 * 109.54603 * 62.97099 * 5 4 2 32 32 H 0.97000 * 120.00194 * 5.04969 * 8 6 5 33 33 H 1.08999 * 109.47124 * 305.18595 * 9 8 6 34 34 H 1.09005 * 109.46835 * 65.18740 * 9 8 6 35 35 H 0.97007 * 120.00144 * 185.02100 * 14 13 11 36 36 H 1.08991 * 117.50307 * 0.02562 * 19 10 9 37 37 H 1.09005 * 117.49503 * 145.02555 * 19 10 9 38 38 H 1.08998 * 117.50302 * 252.51390 * 20 19 10 39 39 H 1.08998 * 117.49822 * 107.48762 * 20 19 10 40 40 H 1.08996 * 109.51954 * 176.89233 * 21 5 4 41 41 H 1.09004 * 109.51749 * 297.07278 * 21 5 4 42 42 H 1.08997 * 109.47111 * 59.99609 * 24 22 21 43 43 H 1.08998 * 109.46680 * 179.97438 * 24 22 21 44 44 H 1.08999 * 109.46555 * 299.99141 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 1.2497 5 6 3.5711 -0.7707 1.2124 6 6 4.0799 -1.5473 2.3993 7 8 3.4386 -2.4806 2.8335 8 7 5.2476 -1.2045 2.9785 9 6 5.7972 -2.0251 4.0606 10 6 7.0501 -1.3523 4.6249 11 6 8.3262 -1.6153 3.8677 12 1 8.6499 -0.9283 3.0998 13 6 9.0805 -2.7332 4.1551 14 7 8.6079 -3.6546 4.9658 15 14 10.7735 -2.9387 3.3931 16 1 11.6415 -1.8053 3.8022 17 1 11.3742 -4.2146 3.8584 18 1 10.6512 -2.9594 1.9133 19 6 7.1478 -1.2024 6.1444 20 6 6.8827 0.0249 5.2702 21 6 4.0176 -1.4600 -0.0807 22 6 3.4307 -0.7095 -1.2789 23 1 3.7099 -1.2206 -2.2002 24 6 3.9763 0.7198 -1.3027 25 8 2.0066 -0.6743 -1.1662 26 1 -0.3634 0.5135 0.8902 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5141 -0.8898 29 1 1.7148 -0.1840 2.1399 30 1 1.6434 -1.7370 1.2718 31 1 3.9689 0.2436 1.2424 32 1 5.7242 -0.4145 2.6789 33 1 5.0538 -2.1298 4.8508 34 1 6.0571 -3.0104 3.6733 35 1 9.1659 -4.4044 5.2257 36 1 6.3198 -1.5834 6.7420 37 1 8.1354 -1.2942 6.5967 38 1 7.6956 0.7405 5.1472 39 1 5.8799 0.4516 5.2926 40 1 5.1058 -1.4498 -0.1417 41 1 3.6613 -2.4902 -0.0860 42 1 5.0627 0.6926 -1.3877 43 1 3.5587 1.2538 -2.1562 44 1 3.6965 1.2308 -0.3815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431146550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:42 Heat of formation + Delta-G solvation = -81.649302 kcal Electronic energy + Delta-G solvation = -22905.314695 eV Core-core repulsion = 19629.532817 eV Total energy + Delta-G solvation = -3275.781878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38208 -38.64127 -36.73363 -33.74717 -33.38389 -33.20462 -31.98064 -29.67333 -26.77405 -26.66137 -25.36438 -23.47497 -22.53110 -21.28245 -19.84810 -19.47415 -19.07419 -17.04002 -16.39373 -16.12737 -15.96118 -15.08799 -14.78915 -14.59005 -14.56144 -14.24200 -13.80387 -13.52005 -13.08980 -12.84144 -12.76615 -12.56484 -12.19145 -12.06951 -11.79810 -11.73213 -11.57601 -11.29267 -11.10933 -11.09369 -10.91869 -10.70191 -10.57335 -10.32050 -10.24987 -9.75452 -9.67338 -9.14559 -8.98196 -8.49847 -8.24582 -8.20276 -6.12101 -4.19720 3.11361 3.25293 3.31850 3.32942 3.63562 3.79274 4.33968 4.62229 4.68132 4.80240 4.84305 5.00312 5.13443 5.16995 5.21594 5.23088 5.26976 5.35630 5.40802 5.55274 5.62922 5.71916 5.79666 5.84537 5.94942 5.98130 5.99598 6.11274 6.12468 6.30707 6.32379 6.40077 6.58536 6.63039 6.84121 7.04307 7.19636 7.22046 7.39880 7.46989 7.78013 8.22588 8.30906 8.78710 8.84802 9.47416 10.96708 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.004186 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.069943 B = 6687.439336 C = 7273.248210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.060 0.940 4 C -0.132 4.132 5 C -0.107 4.107 6 C 0.509 3.491 7 O -0.553 6.553 8 N -0.708 5.708 9 C 0.161 3.839 10 C 0.028 3.972 11 C -0.501 4.501 12 H 0.059 0.941 13 C 0.074 3.926 14 N -0.873 5.873 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.148 4.148 20 C -0.210 4.210 21 C -0.138 4.138 22 C 0.091 3.909 23 H 0.104 0.896 24 C -0.188 4.188 25 O -0.375 6.375 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 9.144 -9.829 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.078 0.922 4 C -0.170 4.170 5 C -0.128 4.128 6 C 0.294 3.706 7 O -0.432 6.432 8 N -0.356 5.356 9 C 0.039 3.961 10 C 0.028 3.972 11 C -0.539 4.539 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.509 5.509 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.186 4.186 20 C -0.247 4.247 21 C -0.176 4.176 22 C 0.033 3.967 23 H 0.122 0.878 24 C -0.246 4.246 25 O -0.294 6.294 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.231 0.769 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.103 8.137 -9.591 16.777 hybrid contribution 1.581 0.286 -0.098 1.609 sum -9.522 8.423 -9.688 15.984 Atomic orbital electron populations 1.21752 0.93133 1.03047 1.02177 1.22096 0.94913 0.95246 0.85094 0.92182 1.22092 0.93562 1.03237 0.98125 1.21333 0.97172 1.00052 0.94271 1.20414 0.81359 0.84763 0.84105 1.90655 1.57469 1.30509 1.64557 1.46176 1.22047 1.29932 1.37492 1.21135 0.93224 0.94485 0.87280 1.19061 0.93578 0.92336 0.92266 1.20338 1.05214 1.07656 1.20649 0.92240 1.24967 0.97873 0.94914 0.95287 1.70020 1.35572 1.10736 1.34527 0.86730 0.84604 0.77396 0.79698 1.20237 1.21239 1.20180 1.22509 1.00642 1.00443 0.95013 1.22979 0.99501 0.92572 1.09666 1.22128 1.01819 1.00691 0.92944 1.22141 0.80798 0.95459 0.98272 0.87785 1.22485 1.02133 0.97327 1.02607 1.87964 1.20703 1.77797 1.42976 0.91138 0.91709 0.91999 0.90879 0.89656 0.89476 0.76914 0.94068 0.91043 0.92783 0.91669 0.89855 0.90285 0.91666 0.90025 0.90224 0.91122 0.91904 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.56 37.16 0.36 -0.96 16 2 C 0.08 0.91 2.94 -26.68 -0.08 0.83 16 3 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 4 C -0.13 -1.67 4.40 -26.59 -0.12 -1.79 16 5 C -0.11 -1.43 2.30 -91.59 -0.21 -1.64 16 6 C 0.51 9.20 6.85 -10.99 -0.08 9.13 16 7 O -0.55 -12.19 16.17 5.56 0.09 -12.10 16 8 N -0.71 -13.23 5.47 -60.29 -0.33 -13.56 16 9 C 0.16 3.66 5.62 -4.04 -0.02 3.64 16 10 C 0.03 0.66 1.37 -155.66 -0.21 0.45 16 11 C -0.50 -12.85 8.81 -34.44 -0.30 -13.15 16 12 H 0.06 1.50 7.83 -52.49 -0.41 1.09 16 13 C 0.07 1.95 5.37 -17.82 -0.10 1.85 16 14 N -0.87 -24.15 12.93 55.43 0.72 -23.43 16 15 Si 0.89 20.40 29.55 -169.99 -5.02 15.37 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.15 -3.35 9.37 -26.73 -0.25 -3.60 16 20 C -0.21 -4.26 9.83 -26.73 -0.26 -4.52 16 21 C -0.14 -1.74 4.91 -26.59 -0.13 -1.87 16 22 C 0.09 0.98 3.91 -26.68 -0.10 0.87 16 23 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 24 C -0.19 -1.70 8.66 37.16 0.32 -1.37 16 25 O -0.37 -4.57 10.24 -35.23 -0.36 -4.93 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.26 7.76 -51.93 -0.40 0.86 16 31 H 0.09 0.99 6.59 -51.93 -0.34 0.65 16 32 H 0.40 6.60 8.42 -40.82 -0.34 6.26 16 33 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 34 H 0.07 1.86 8.10 -51.93 -0.42 1.44 16 35 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 36 H 0.06 1.42 8.06 -51.93 -0.42 1.00 16 37 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -29.58 351.55 -8.34 -37.92 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.54 Total: 7.59 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.19 Total: -12.15 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.39 Total: -37.00 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.27 Total: -17.03 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.58 -8.34 -37.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431146550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.730 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds