Wall clock time and date at job start Tue Mar 31 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.35317 * 2 1 4 4 C 1.54952 * 110.30882 * 237.85940 * 2 1 3 5 5 C 1.55449 * 100.98767 * 204.69091 * 4 2 1 6 6 C 1.54382 * 102.19042 * 34.03788 * 5 4 2 7 7 H 1.09001 * 109.83494 * 98.29736 * 6 5 4 8 8 C 1.52995 * 109.83663 * 219.18656 * 6 5 4 9 9 C 1.52999 * 109.47388 * 184.81195 * 8 6 5 10 10 C 1.50707 * 109.46820 * 179.97438 * 9 8 6 11 11 O 1.21276 * 120.00392 * 5.20728 * 10 9 8 12 12 N 1.34781 * 119.99268 * 185.21372 * 10 9 8 13 13 C 1.46502 * 119.99540 * 184.63616 * 12 10 9 14 14 C 1.52994 * 109.47088 * 184.72201 * 13 12 10 15 15 C 1.50695 * 115.55076 * 297.52335 * 14 13 12 16 16 H 1.07999 * 120.00149 * 92.45565 * 15 14 13 17 17 C 1.37878 * 120.00339 * 272.45668 * 15 14 13 18 18 N 1.31514 * 120.00462 * 180.16637 * 17 15 14 19 19 Si 1.86810 * 119.99764 * 0.44034 * 17 15 14 20 20 H 1.48496 * 109.47124 * 267.07122 * 19 17 15 21 21 H 1.48501 * 109.46922 * 27.06925 * 19 17 15 22 22 H 1.48496 * 109.46855 * 147.06459 * 19 17 15 23 23 C 1.52999 * 117.51943 * 83.22722 * 14 13 12 24 24 C 1.53001 * 60.00154 * 107.48064 * 23 14 13 25 25 O 1.43248 * 107.66035 * 338.74233 * 6 5 4 26 26 H 1.09000 * 109.47310 * 299.30807 * 1 2 3 27 27 H 1.09005 * 109.47422 * 59.30679 * 1 2 3 28 28 H 1.09001 * 109.47044 * 179.30825 * 1 2 3 29 29 H 1.08998 * 111.12325 * 322.55791 * 4 2 1 30 30 H 1.08996 * 111.12695 * 86.68286 * 4 2 1 31 31 H 1.08999 * 110.83675 * 275.89232 * 5 4 2 32 32 H 1.09003 * 110.92679 * 152.22568 * 5 4 2 33 33 H 1.08997 * 109.47458 * 64.80874 * 8 6 5 34 34 H 1.09006 * 109.46796 * 304.81385 * 8 6 5 35 35 H 1.09001 * 109.47102 * 60.00187 * 9 8 6 36 36 H 1.09000 * 109.47318 * 299.99446 * 9 8 6 37 37 H 0.96991 * 120.00246 * 4.63114 * 12 10 9 38 38 H 1.09004 * 109.47234 * 64.71786 * 13 12 10 39 39 H 1.09002 * 109.46855 * 304.72237 * 13 12 10 40 40 H 0.96994 * 120.00075 * 180.27580 * 18 17 15 41 41 H 1.09003 * 117.49927 * 214.97279 * 23 14 13 42 42 H 1.09005 * 117.49746 * 359.97438 * 23 14 13 43 43 H 1.08999 * 117.49419 * 252.51061 * 24 23 14 44 44 H 1.08996 * 117.51908 * 107.48364 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0678 -0.7731 -1.2305 5 6 3.4709 -1.2047 -0.7192 6 6 3.2113 -1.4420 0.7840 7 1 3.0630 -2.5057 0.9703 8 6 4.3990 -0.9325 1.6028 9 6 4.1878 -1.2790 3.0780 10 6 5.3581 -0.7777 3.8843 11 8 6.2247 -0.1185 3.3501 12 7 5.4417 -1.0621 5.1991 13 6 6.5240 -0.4910 6.0046 14 6 6.4587 -1.0601 7.4233 15 6 5.2055 -0.7381 8.1957 16 1 4.3678 -1.4194 8.1740 17 6 5.1282 0.4263 8.9300 18 7 4.0357 0.7057 9.6068 19 14 6.5725 1.6107 8.9576 20 1 7.4437 1.3020 10.1198 21 1 7.3531 1.4688 7.7023 22 1 6.0688 3.0029 9.0724 23 6 7.1095 -2.4227 7.6690 24 6 7.7686 -1.1518 8.2087 25 8 2.0285 -0.7168 1.1406 26 1 -0.3634 0.5030 0.8961 27 1 -0.3634 0.5246 -0.8837 28 1 -0.3633 -1.0276 -0.0124 29 1 1.4470 -1.6415 -1.4508 30 1 2.1490 -0.1205 -2.0997 31 1 4.1992 -0.4071 -0.8658 32 1 3.7971 -2.1236 -1.2063 33 1 4.4800 0.1487 1.4916 34 1 5.3150 -1.4039 1.2463 35 1 4.1070 -2.3604 3.1892 36 1 3.2720 -0.8076 3.4345 37 1 4.7854 -1.6447 5.6120 38 1 6.4158 0.5930 6.0425 39 1 7.4841 -0.7447 5.5552 40 1 3.9799 1.5268 10.1201 41 1 6.6311 -3.0864 8.3894 42 1 7.5841 -2.9144 6.8197 43 1 8.6769 -0.8072 7.7144 44 1 7.7239 -0.9789 9.2839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431158414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:44 Heat of formation + Delta-G solvation = -80.672531 kcal Electronic energy + Delta-G solvation = -22091.492855 eV Core-core repulsion = 18815.753333 eV Total energy + Delta-G solvation = -3275.739522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.90782 -39.03429 -37.05148 -33.84707 -33.35347 -32.41452 -32.12888 -30.75696 -27.41322 -26.05267 -24.98255 -22.92694 -21.72270 -21.70807 -20.55491 -19.68513 -19.04894 -17.17820 -16.77747 -16.35961 -15.83166 -15.26358 -15.05334 -14.77699 -14.45386 -13.92514 -13.79645 -13.57538 -13.16142 -13.02743 -12.74093 -12.55505 -12.41994 -12.29923 -11.93908 -11.87199 -11.73520 -11.16288 -11.15089 -10.98840 -10.92186 -10.79356 -10.74184 -10.51032 -10.16597 -9.67075 -9.58075 -9.31280 -9.16944 -8.65760 -8.55088 -8.23091 -6.15815 -4.20645 3.19405 3.28545 3.38979 3.44729 3.60647 3.82109 4.28932 4.40126 4.52424 4.59645 4.89076 4.94787 4.97349 5.09109 5.13071 5.15794 5.28529 5.37469 5.39565 5.49093 5.53821 5.59457 5.67991 5.71509 5.82318 5.86461 5.91501 5.97909 6.03051 6.08501 6.22087 6.28714 6.33026 6.43178 6.54593 6.71372 6.99727 6.99903 7.08113 7.19866 7.68403 8.24770 8.41114 8.83981 8.84402 9.47397 10.95425 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.003455 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.730789 B = 8101.455144 C = 8664.331060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.110 4.110 9 C -0.137 4.137 10 C 0.505 3.495 11 O -0.564 6.564 12 N -0.704 5.704 13 C 0.156 3.844 14 C -0.015 4.015 15 C -0.492 4.492 16 H 0.079 0.921 17 C 0.080 3.920 18 N -0.895 5.895 19 Si 0.879 3.121 20 H -0.279 1.279 21 H -0.256 1.256 22 H -0.294 1.294 23 C -0.178 4.178 24 C -0.193 4.193 25 O -0.371 6.371 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.406 0.594 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.265 0.735 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -4.791 -19.423 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.189 4.189 6 C 0.022 3.978 7 H 0.098 0.902 8 C -0.148 4.148 9 C -0.177 4.177 10 C 0.291 3.709 11 O -0.444 6.444 12 N -0.353 5.353 13 C 0.032 3.968 14 C -0.016 4.016 15 C -0.529 4.529 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.531 5.531 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.180 1.180 22 H -0.220 1.220 23 C -0.215 4.215 24 C -0.231 4.231 25 O -0.291 6.291 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.240 0.760 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.810 -4.167 -19.444 20.083 hybrid contribution 0.540 0.483 0.296 0.783 sum -2.270 -3.684 -19.148 19.631 Atomic orbital electron populations 1.21881 0.93849 1.02691 1.02398 1.22943 0.94752 0.95716 0.84960 0.91324 1.23344 0.96372 1.00801 0.98483 1.23195 0.97676 1.02748 0.95323 1.22798 0.85571 0.96093 0.93304 0.90240 1.21702 0.96882 1.02809 0.93434 1.21594 0.98169 1.02491 0.95400 1.20672 0.87298 0.80330 0.82581 1.90629 1.41596 1.41072 1.71138 1.45906 1.31129 1.50092 1.08171 1.21096 0.87963 0.97658 0.90062 1.19617 0.93547 0.96216 0.92258 1.20190 0.98063 1.06623 1.27993 0.90351 1.24967 0.95675 0.97380 0.94246 1.69884 1.27132 1.25425 1.30697 0.86858 0.83090 0.79922 0.79497 1.20479 1.18047 1.22034 1.22834 1.05082 0.91369 1.02257 1.22933 0.96631 1.03381 1.00186 1.88480 1.42034 1.64690 1.33906 0.91698 0.91491 0.92011 0.90424 0.90167 0.90201 0.90078 0.90699 0.90545 0.89547 0.88158 0.75966 0.92197 0.93675 0.92478 0.89426 0.90943 0.90773 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.62 37.16 0.36 -0.89 16 2 C 0.07 0.71 4.08 -25.70 -0.10 0.61 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -1.16 6.57 -24.40 -0.16 -1.32 16 5 C -0.15 -1.27 6.56 -24.71 -0.16 -1.43 16 6 C 0.08 0.85 3.51 -26.01 -0.09 0.76 16 7 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 8 C -0.11 -1.39 4.09 -26.73 -0.11 -1.50 16 9 C -0.14 -1.90 5.61 -27.88 -0.16 -2.06 16 10 C 0.50 9.24 7.82 -10.98 -0.09 9.15 16 11 O -0.56 -12.13 15.97 5.56 0.09 -12.04 16 12 N -0.70 -13.48 5.46 -60.29 -0.33 -13.81 16 13 C 0.16 3.37 5.19 -4.04 -0.02 3.34 16 14 C -0.02 -0.34 0.87 -155.66 -0.13 -0.47 16 15 C -0.49 -12.98 9.06 -34.44 -0.31 -13.29 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 19 Si 0.88 21.58 24.86 -169.99 -4.23 17.35 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -6.07 5.70 56.52 0.32 -5.74 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 C -0.18 -3.48 9.95 -26.73 -0.27 -3.74 16 24 C -0.19 -4.03 7.48 -26.73 -0.20 -4.23 16 25 O -0.37 -4.59 10.32 -35.23 -0.36 -4.96 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.44 7.89 -51.93 -0.41 1.03 16 37 H 0.41 7.28 8.24 -40.82 -0.34 6.95 16 38 H 0.06 1.43 6.78 -51.93 -0.35 1.07 16 39 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.09 1.95 7.15 -51.93 -0.37 1.58 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -31.29 352.52 -8.13 -39.42 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.84 Total: 7.44 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.54 Total: -12.93 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.44 Total: -39.60 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.27 Total: -16.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.23 Total: 17.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.29 -8.13 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.252 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds