Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.27633 * 2 1 4 4 C 1.54945 * 110.31441 * 122.10003 * 2 1 3 5 5 C 1.55296 * 100.94679 * 155.35894 * 4 2 1 6 6 C 1.54384 * 102.25240 * 325.86596 * 5 4 2 7 7 H 1.08996 * 109.82685 * 261.74958 * 6 5 4 8 8 C 1.52998 * 109.83099 * 140.87078 * 6 5 4 9 9 C 1.53002 * 109.47281 * 175.00013 * 8 6 5 10 10 C 1.50698 * 109.47301 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00032 * 5.43719 * 10 9 8 12 12 N 1.34778 * 119.99928 * 185.43750 * 10 9 8 13 13 C 1.46492 * 119.99853 * 184.80500 * 12 10 9 14 14 C 1.52999 * 109.47308 * 185.88305 * 13 12 10 15 15 C 1.50701 * 115.54648 * 34.18753 * 14 13 12 16 16 H 1.07995 * 120.00445 * 271.19695 * 15 14 13 17 17 C 1.37886 * 119.99849 * 91.19320 * 15 14 13 18 18 N 1.31514 * 119.99605 * 172.31440 * 17 15 14 19 19 Si 1.86800 * 119.99984 * 352.31829 * 17 15 14 20 20 H 1.48501 * 109.46650 * 93.70385 * 19 17 15 21 21 H 1.48495 * 109.47047 * 213.70138 * 19 17 15 22 22 H 1.48496 * 109.47045 * 333.70269 * 19 17 15 23 23 C 1.53003 * 117.50365 * 248.48197 * 14 13 12 24 24 C 1.52997 * 117.50412 * 179.85456 * 14 13 12 25 25 O 1.43236 * 107.58841 * 21.35560 * 6 5 4 26 26 H 1.08994 * 109.46851 * 297.90263 * 1 2 3 27 27 H 1.08998 * 109.46943 * 57.90659 * 1 2 3 28 28 H 1.09001 * 109.46910 * 177.90430 * 1 2 3 29 29 H 1.09001 * 111.12253 * 37.43287 * 4 2 1 30 30 H 1.09001 * 111.11996 * 273.28215 * 4 2 1 31 31 H 1.09004 * 110.84879 * 207.67585 * 5 4 2 32 32 H 1.08998 * 111.02411 * 84.13254 * 5 4 2 33 33 H 1.09002 * 109.47155 * 54.99734 * 8 6 5 34 34 H 1.09002 * 109.46998 * 295.00082 * 8 6 5 35 35 H 1.08998 * 109.46776 * 59.99662 * 9 8 6 36 36 H 1.09001 * 109.46642 * 300.00015 * 9 8 6 37 37 H 0.97005 * 119.99701 * 4.81249 * 12 10 9 38 38 H 1.09001 * 109.46926 * 65.88701 * 13 12 10 39 39 H 1.08997 * 109.47770 * 305.88647 * 13 12 10 40 40 H 0.97001 * 119.99717 * 179.97438 * 18 17 15 41 41 H 1.08994 * 117.49667 * 359.97438 * 23 14 13 42 42 H 1.08993 * 117.49752 * 145.01759 * 23 14 13 43 43 H 1.08998 * 117.50573 * 214.98500 * 24 14 13 44 44 H 1.09002 * 117.49546 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0679 -0.7722 1.2309 5 6 3.4700 -1.2020 0.7198 6 6 3.2112 -1.4426 -0.7830 7 1 3.0641 -2.5068 -0.9671 8 6 4.3991 -0.9338 -1.6022 9 6 4.1911 -1.2876 -3.0761 10 6 5.3614 -0.7870 -3.8829 11 8 6.3171 -0.2929 -3.3229 12 7 5.3461 -0.8883 -5.2268 13 6 6.5253 -0.4994 -6.0041 14 6 6.1982 -0.5704 -7.4970 15 6 4.7841 -0.2074 -7.8705 16 1 4.0176 -0.9681 -7.8870 17 6 4.4687 1.0961 -8.1911 18 7 3.2756 1.3872 -8.6618 19 14 5.7360 2.4483 -7.9570 20 1 6.4751 2.6593 -9.2276 21 1 5.0506 3.7070 -7.5681 22 1 6.6895 2.0536 -6.8892 23 6 6.8897 -1.6586 -8.3209 24 6 7.3073 -0.1955 -8.4820 25 8 2.0286 -0.7177 -1.1401 26 1 -0.3633 0.4809 0.9082 27 1 -0.3633 0.5460 -0.8706 28 1 -0.3633 -1.0270 -0.0376 29 1 1.4471 -1.6404 1.4520 30 1 2.1497 -0.1187 2.0995 31 1 3.7967 -2.1197 1.2090 32 1 4.2001 -0.4058 0.8651 33 1 5.3156 -1.4012 -1.2421 34 1 4.4770 0.1482 -1.4957 35 1 3.2746 -0.8202 -3.4361 36 1 4.1132 -2.3696 -3.1825 37 1 4.5542 -1.2187 -5.6792 38 1 7.3483 -1.1779 -5.7798 39 1 6.8128 0.5191 -5.7432 40 1 3.0536 2.3042 -8.8870 41 1 7.5780 -2.3236 -7.7993 42 1 6.3218 -2.1121 -9.1331 43 1 7.0142 0.3134 -9.4002 44 1 8.2702 0.1014 -8.0663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431158415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = -80.011543 kcal Electronic energy + Delta-G solvation = -22255.420670 eV Core-core repulsion = 18979.709810 eV Total energy + Delta-G solvation = -3275.710860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85809 -38.95485 -37.02409 -33.79053 -33.28251 -32.37394 -32.15827 -30.70687 -27.35533 -25.95168 -25.04624 -22.87426 -21.68251 -21.66326 -20.51010 -19.62195 -19.01777 -17.12888 -16.65621 -16.32452 -15.80600 -15.24597 -15.06557 -14.59926 -14.39826 -13.89140 -13.68846 -13.67072 -13.17351 -12.83257 -12.79696 -12.53838 -12.36584 -12.28469 -12.02784 -11.83994 -11.68196 -11.17114 -11.11177 -10.94007 -10.85202 -10.69931 -10.63294 -10.49711 -10.14846 -9.69978 -9.53071 -9.31624 -9.06729 -8.64444 -8.59543 -8.08381 -6.19144 -4.23221 3.27907 3.28376 3.38983 3.46110 3.65646 3.93674 4.33426 4.39552 4.56794 4.65562 4.87714 4.98655 5.01138 5.09825 5.17108 5.20565 5.33609 5.42112 5.44838 5.52639 5.60210 5.65758 5.74051 5.76262 5.87893 5.92603 5.97694 6.02119 6.02535 6.10334 6.28420 6.31756 6.38017 6.46333 6.57101 6.73559 6.94345 7.05088 7.09881 7.30295 7.68775 8.36881 8.39133 8.80769 8.95540 9.45395 10.91574 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021090 B = 0.003835 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.315917 B = 7300.303964 C = 7970.692324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.110 4.110 9 C -0.137 4.137 10 C 0.503 3.497 11 O -0.569 6.569 12 N -0.698 5.698 13 C 0.151 3.849 14 C -0.015 4.015 15 C -0.495 4.495 16 H 0.079 0.921 17 C 0.085 3.915 18 N -0.891 5.891 19 Si 0.876 3.124 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.255 1.255 23 C -0.179 4.179 24 C -0.196 4.196 25 O -0.371 6.371 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.411 0.589 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.266 0.734 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -5.686 17.065 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.189 4.189 6 C 0.022 3.978 7 H 0.098 0.902 8 C -0.148 4.148 9 C -0.177 4.177 10 C 0.290 3.710 11 O -0.450 6.450 12 N -0.348 5.348 13 C 0.026 3.974 14 C -0.016 4.016 15 C -0.532 4.532 16 H 0.097 0.903 17 C -0.119 4.119 18 N -0.527 5.527 19 Si 0.704 3.296 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.180 1.180 23 C -0.216 4.216 24 C -0.234 4.234 25 O -0.290 6.290 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.248 0.752 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.522 -5.204 17.156 17.992 hybrid contribution 0.372 0.752 -0.126 0.848 sum -1.150 -4.452 17.029 17.639 Atomic orbital electron populations 1.21880 0.93867 1.02765 1.02312 1.22943 0.94760 0.95717 0.84966 0.91339 1.23312 0.96371 1.00811 0.98478 1.23168 0.97656 1.02750 0.95376 1.22798 0.85599 0.96103 0.93259 0.90249 1.21701 0.96940 1.02610 0.93546 1.21579 0.98292 1.02439 0.95346 1.20668 0.88419 0.78990 0.82958 1.90618 1.36886 1.46081 1.71368 1.45989 1.18644 1.64711 1.05476 1.21043 0.86013 0.99082 0.91219 1.19615 0.94206 0.99721 0.88041 1.20112 0.90858 0.95057 1.47184 0.90289 1.24941 0.95133 0.98568 0.93219 1.69904 1.20843 1.19859 1.42075 0.86903 0.82138 0.81180 0.79351 1.20477 1.22062 1.17963 1.22915 1.03683 0.90823 1.04223 1.22925 0.98798 0.98825 1.02804 1.88487 1.42032 1.64628 1.33891 0.91518 0.91712 0.91978 0.90421 0.90195 0.90137 0.90213 0.90358 0.90944 0.88391 0.89352 0.75193 0.93888 0.92001 0.92446 0.90921 0.89445 0.89242 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.62 37.16 0.36 -0.98 16 2 C 0.07 0.76 4.08 -25.70 -0.10 0.65 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.15 -1.23 6.57 -24.49 -0.16 -1.39 16 5 C -0.15 -1.34 6.55 -24.79 -0.16 -1.51 16 6 C 0.08 0.90 3.51 -26.01 -0.09 0.81 16 7 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 8 C -0.11 -1.47 4.09 -26.73 -0.11 -1.58 16 9 C -0.14 -2.02 5.61 -27.88 -0.16 -2.18 16 10 C 0.50 9.62 7.82 -10.99 -0.09 9.54 16 11 O -0.57 -12.56 15.95 5.55 0.09 -12.47 16 12 N -0.70 -14.00 5.28 -60.30 -0.32 -14.32 16 13 C 0.15 3.24 5.64 -4.05 -0.02 3.22 16 14 C -0.01 -0.33 1.24 -155.66 -0.19 -0.52 16 15 C -0.50 -12.89 7.87 -34.44 -0.27 -13.16 16 16 H 0.08 2.19 8.02 -52.49 -0.42 1.77 16 17 C 0.09 2.35 5.46 -17.82 -0.10 2.26 16 18 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 19 Si 0.88 21.70 25.18 -169.99 -4.28 17.42 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.26 -6.19 5.33 56.52 0.30 -5.89 16 23 C -0.18 -3.53 9.88 -26.73 -0.26 -3.79 16 24 C -0.20 -4.11 7.66 -26.73 -0.20 -4.31 16 25 O -0.37 -4.85 10.34 -35.23 -0.36 -5.21 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 33 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.50 7.90 -51.93 -0.41 1.09 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.41 8.06 7.33 -40.82 -0.30 7.76 16 38 H 0.04 0.87 7.90 -51.93 -0.41 0.46 16 39 H 0.06 1.46 6.33 -51.93 -0.33 1.13 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 42 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 43 H 0.09 1.97 7.21 -51.93 -0.37 1.60 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -30.90 350.38 -8.18 -39.08 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -7.79 Total: 8.52 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.57 Total: -12.95 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.46 Total: -39.67 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.28 Total: -17.68 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.28 Total: 17.42 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.90 -8.18 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.931 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds