Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.68075 * 2 1 4 4 C 1.55001 * 110.61353 * 237.03762 * 2 1 3 5 5 C 1.54811 * 102.08999 * 204.47403 * 4 2 1 6 6 C 1.54104 * 104.18782 * 20.88295 * 5 4 2 7 7 H 1.08994 * 109.87656 * 242.45249 * 6 5 4 8 8 C 1.53002 * 109.87594 * 121.45191 * 6 5 4 9 9 C 1.53002 * 109.46980 * 174.99884 * 8 6 5 10 10 C 1.50693 * 109.47169 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00245 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99983 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00046 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47230 * 186.35735 * 13 12 10 15 15 C 1.50701 * 115.56368 * 39.97576 * 14 13 12 16 16 H 1.08003 * 119.99866 * 260.47649 * 15 14 13 17 17 C 1.37875 * 119.99739 * 80.46599 * 15 14 13 18 18 N 1.31507 * 120.00349 * 354.23923 * 17 15 14 19 19 Si 1.86808 * 119.99687 * 174.23642 * 17 15 14 20 20 H 1.48500 * 109.46912 * 90.00350 * 19 17 15 21 21 H 1.48501 * 109.47138 * 209.99778 * 19 17 15 22 22 H 1.48498 * 109.47315 * 330.00276 * 19 17 15 23 23 C 1.53002 * 117.50052 * 254.28864 * 14 13 12 24 24 C 1.52995 * 117.49950 * 185.66553 * 14 13 12 25 25 O 1.43739 * 107.29522 * 2.02789 * 6 5 4 26 26 H 1.09003 * 109.47175 * 182.96445 * 1 2 3 27 27 H 1.09000 * 109.46667 * 302.95950 * 1 2 3 28 28 H 1.08998 * 109.47447 * 62.95939 * 1 2 3 29 29 H 1.09004 * 110.90669 * 86.28348 * 4 2 1 30 30 H 1.08999 * 110.94213 * 322.68704 * 4 2 1 31 31 H 1.08996 * 110.48940 * 262.20665 * 5 4 2 32 32 H 1.09003 * 110.60111 * 139.61383 * 5 4 2 33 33 H 1.08997 * 109.47063 * 55.00306 * 8 6 5 34 34 H 1.08997 * 109.47523 * 294.99779 * 8 6 5 35 35 H 1.09007 * 109.47059 * 59.99755 * 9 8 6 36 36 H 1.08998 * 109.47377 * 300.00502 * 9 8 6 37 37 H 0.96998 * 120.00106 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47060 * 66.35521 * 13 12 10 39 39 H 1.09003 * 109.46942 * 306.35910 * 13 12 10 40 40 H 0.97003 * 120.00266 * 185.03967 * 18 17 15 41 41 H 1.09006 * 117.49363 * 0.02562 * 23 14 13 42 42 H 1.08997 * 117.49995 * 145.01748 * 23 14 13 43 43 H 1.08997 * 117.50014 * 214.97556 * 24 14 13 44 44 H 1.08997 * 117.50302 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 6 2.0757 -0.7893 -1.2172 5 6 3.4794 -1.2167 -0.7237 6 6 3.3839 -1.1255 0.8117 7 1 4.0873 -0.3803 1.1831 8 6 3.6935 -2.4885 1.4340 9 6 3.7187 -2.3593 2.9584 10 6 4.0230 -3.7018 3.5714 11 8 4.2025 -4.6670 2.8593 12 7 4.0967 -3.8298 4.9111 13 6 4.3931 -5.1349 5.5071 14 6 4.2631 -5.0421 7.0287 15 6 3.1095 -4.2143 7.5335 16 1 3.2760 -3.1985 7.8604 17 6 1.8414 -4.7537 7.5778 18 7 1.6169 -5.9481 7.0755 19 14 0.4421 -3.7878 8.3516 20 1 -0.2175 -2.9550 7.3140 21 1 -0.5477 -4.7299 8.9329 22 1 0.9790 -2.9106 9.4228 23 6 5.5549 -5.0277 7.8485 24 6 4.6628 -6.2707 7.8481 25 8 2.0385 -0.7354 1.1337 26 1 -0.3634 -1.0263 0.0531 27 1 -0.3633 0.5591 0.8623 28 1 -0.3634 0.4672 -0.9153 29 1 2.1509 -0.1475 -2.0951 30 1 1.4551 -1.6606 -1.4266 31 1 4.2406 -0.5332 -1.0998 32 1 3.6997 -2.2387 -1.0322 33 1 4.6650 -2.8361 1.0828 34 1 2.9245 -3.2040 1.1428 35 1 2.7472 -2.0116 3.3097 36 1 4.4876 -1.6437 3.2497 37 1 3.9535 -3.0578 5.4807 38 1 5.4092 -5.4310 5.2465 39 1 3.6899 -5.8760 5.1269 40 1 0.7126 -6.2974 7.0403 41 1 6.4973 -5.0840 7.3036 42 1 5.5703 -4.4195 8.7528 43 1 4.0914 -6.4803 8.7523 44 1 5.0188 -7.1451 7.3032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431158417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = -84.418662 kcal Electronic energy + Delta-G solvation = -22222.064427 eV Core-core repulsion = 18946.162460 eV Total energy + Delta-G solvation = -3275.901967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79501 -38.78947 -36.65362 -33.76119 -33.08256 -32.34057 -32.00640 -30.65748 -27.18232 -25.74407 -24.98499 -22.74190 -21.38292 -21.16019 -20.88631 -19.56533 -19.08655 -16.76238 -16.44598 -16.13958 -15.90682 -14.95724 -14.85654 -14.65574 -14.55253 -14.03084 -13.74061 -13.21695 -13.15124 -12.80978 -12.57499 -12.47093 -12.21037 -11.85466 -11.69044 -11.62480 -11.55766 -11.08694 -10.99854 -10.92933 -10.87024 -10.81652 -10.56818 -10.52021 -10.22844 -9.67865 -9.63783 -9.12864 -8.88696 -8.50798 -8.28453 -7.85635 -6.07822 -4.17251 3.26140 3.34311 3.35766 3.42927 3.70141 4.07172 4.35550 4.42943 4.56690 4.76289 4.87762 5.03226 5.17372 5.21430 5.24146 5.31275 5.35327 5.40593 5.48817 5.57999 5.66938 5.71051 5.77205 5.87783 5.97468 6.00290 6.02173 6.08956 6.30265 6.33246 6.43305 6.51970 6.59655 6.73053 6.94177 6.96710 7.10801 7.36163 7.41709 7.55763 7.81079 8.34710 8.52937 8.84449 9.10943 9.50268 11.00034 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017772 B = 0.004022 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.178097 B = 6959.911926 C = 8081.573272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.067 0.933 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.076 3.924 7 H 0.067 0.933 8 C -0.098 4.098 9 C -0.138 4.138 10 C 0.502 3.498 11 O -0.568 6.568 12 N -0.695 5.695 13 C 0.164 3.836 14 C 0.030 3.970 15 C -0.504 4.504 16 H 0.061 0.939 17 C 0.078 3.922 18 N -0.870 5.870 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.211 4.211 24 C -0.157 4.157 25 O -0.366 6.366 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.403 0.597 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.946 11.692 -13.492 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.019 3.981 7 H 0.085 0.915 8 C -0.136 4.136 9 C -0.178 4.178 10 C 0.288 3.712 11 O -0.448 6.448 12 N -0.344 5.344 13 C 0.041 3.959 14 C 0.030 3.970 15 C -0.542 4.542 16 H 0.079 0.921 17 C -0.127 4.127 18 N -0.506 5.506 19 Si 0.715 3.285 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.248 4.248 24 C -0.195 4.195 25 O -0.286 6.286 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.239 0.761 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.825 10.767 -13.736 17.548 hybrid contribution -0.814 0.794 0.589 1.281 sum 1.011 11.561 -13.147 17.536 Atomic orbital electron populations 1.21773 0.93314 1.03184 1.02169 1.23095 0.95172 0.95149 0.85324 0.91552 1.23178 0.96516 1.00817 0.98355 1.22997 0.97488 1.03045 0.95525 1.22806 0.84739 0.96754 0.93841 0.91466 1.21503 1.03093 0.95085 0.93916 1.21598 1.04083 0.95800 0.96301 1.20559 0.77256 0.90513 0.82867 1.90618 1.51860 1.40874 1.61470 1.45938 1.69465 1.13267 1.05700 1.20824 0.97277 0.84088 0.93744 1.19047 0.92128 0.97674 0.88174 1.20299 0.91159 0.98567 1.44155 0.92128 1.24970 0.98609 0.94511 0.94619 1.69968 1.20844 1.16398 1.43345 0.86666 0.82179 0.79850 0.79813 1.20533 1.21171 1.19768 1.23060 0.94633 1.03659 1.03435 1.22532 1.02717 0.91124 1.03117 1.88954 1.27790 1.73270 1.38574 0.91605 0.91838 0.91392 0.90571 0.90388 0.90844 0.90064 0.90239 0.90490 0.88554 0.89686 0.76140 0.95014 0.91200 0.92838 0.91599 0.90425 0.90014 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.66 37.16 0.36 -0.97 16 2 C 0.07 0.70 3.98 -25.67 -0.10 0.60 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.15 -1.32 6.59 -24.72 -0.16 -1.48 16 5 C -0.15 -1.42 6.64 -25.20 -0.17 -1.59 16 6 C 0.08 0.88 3.41 -26.15 -0.09 0.79 16 7 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 8 C -0.10 -1.37 3.99 -26.73 -0.11 -1.47 16 9 C -0.14 -2.10 5.62 -27.89 -0.16 -2.26 16 10 C 0.50 10.05 7.83 -10.99 -0.09 9.96 16 11 O -0.57 -13.21 15.96 5.56 0.09 -13.12 16 12 N -0.69 -14.53 5.27 -60.30 -0.32 -14.85 16 13 C 0.16 3.84 5.76 -4.04 -0.02 3.82 16 14 C 0.03 0.72 1.63 -155.66 -0.25 0.47 16 15 C -0.50 -12.91 7.51 -34.44 -0.26 -13.17 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.08 2.06 5.42 -17.82 -0.10 1.97 16 18 N -0.87 -24.36 13.11 55.43 0.73 -23.63 16 19 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.21 -4.45 9.88 -26.73 -0.26 -4.71 16 24 C -0.16 -3.62 9.71 -26.73 -0.26 -3.88 16 25 O -0.37 -4.87 10.54 -35.23 -0.37 -5.24 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.10 1.51 7.91 -51.93 -0.41 1.10 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.40 7.92 7.59 -40.82 -0.31 7.61 16 38 H 0.03 0.71 7.95 -51.93 -0.41 0.30 16 39 H 0.07 1.87 8.12 -51.93 -0.42 1.45 16 40 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 41 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -30.20 360.67 -8.96 -39.16 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.83 Total: 8.63 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.67 Total: -11.92 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.41 Total: -38.48 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.28 Total: -18.36 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.20 -8.96 -39.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431158417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.261 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds