Wall clock time and date at job start Tue Mar 31 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47439 * 2 1 4 4 H 1.09001 * 109.48773 * 305.02535 * 3 2 1 5 5 C 1.53087 * 109.47791 * 185.00016 * 3 2 1 6 6 C 1.53184 * 109.16147 * 182.41079 * 5 3 2 7 7 H 1.09001 * 109.54075 * 297.02384 * 6 5 3 8 8 C 1.50692 * 109.54492 * 176.84872 * 6 5 3 9 9 O 1.21288 * 120.00177 * 326.86420 * 8 6 5 10 10 N 1.34778 * 120.00433 * 146.87126 * 8 6 5 11 11 C 1.46501 * 120.00175 * 185.00212 * 10 8 6 12 12 C 1.52998 * 109.46970 * 183.19163 * 11 10 8 13 13 C 1.50708 * 115.55001 * 295.06965 * 12 11 10 14 14 H 1.07997 * 119.99450 * 115.37739 * 13 12 11 15 15 C 1.37877 * 119.99977 * 295.37790 * 13 12 11 16 16 N 1.31511 * 119.99790 * 178.34080 * 15 13 12 17 17 Si 1.86799 * 120.00042 * 358.61545 * 15 13 12 18 18 H 1.48501 * 109.47113 * 92.81795 * 17 15 13 19 19 H 1.48494 * 109.46995 * 212.81767 * 17 15 13 20 20 H 1.48496 * 109.46871 * 332.81959 * 17 15 13 21 21 C 1.52998 * 117.50203 * 80.73852 * 12 11 10 22 22 C 1.52995 * 117.50122 * 149.40051 * 12 11 10 23 23 C 1.53178 * 109.03688 * 56.97424 * 6 5 3 24 24 C 1.53086 * 109.16607 * 303.02438 * 23 6 5 25 25 O 1.42897 * 109.47776 * 65.05679 * 3 2 1 26 26 H 1.08993 * 109.47047 * 300.00162 * 1 2 3 27 27 H 1.09006 * 109.46768 * 59.99926 * 1 2 3 28 28 H 1.08996 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46974 * 239.99375 * 2 1 3 30 30 H 1.09000 * 109.46873 * 120.00517 * 2 1 3 31 31 H 1.08998 * 109.52892 * 62.50524 * 5 3 2 32 32 H 1.09001 * 109.52586 * 302.30828 * 5 3 2 33 33 H 0.97000 * 119.99684 * 4.99595 * 10 8 6 34 34 H 1.09003 * 109.46806 * 63.19423 * 11 10 8 35 35 H 1.09000 * 109.47304 * 303.19201 * 11 10 8 36 36 H 0.96996 * 119.99836 * 180.02562 * 16 15 13 37 37 H 1.08996 * 117.50549 * 215.00007 * 21 12 11 38 38 H 1.09008 * 117.49576 * 0.02959 * 21 12 11 39 39 H 1.09007 * 117.49546 * 359.97438 * 22 12 11 40 40 H 1.09001 * 117.50172 * 144.97052 * 22 12 11 41 41 H 1.09002 * 109.51547 * 62.93309 * 23 6 5 42 42 H 1.08996 * 109.52146 * 183.11428 * 23 6 5 43 43 H 1.09001 * 109.48054 * 297.62474 * 24 23 6 44 44 H 1.09006 * 109.49068 * 177.59734 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6053 1.9819 -0.8415 5 6 3.5658 1.4444 -0.1258 6 6 4.0735 2.8883 -0.0645 7 1 3.6806 3.4493 -0.9124 8 6 5.5798 2.8954 -0.1097 9 8 6.2061 1.9895 0.3984 10 7 6.2311 3.9085 -0.7147 11 6 7.6886 3.8619 -0.8555 12 6 8.1803 5.1593 -1.5003 13 6 7.7228 5.3952 -2.9168 14 1 7.0752 6.2293 -3.1431 15 6 8.1311 4.5462 -3.9235 16 7 7.7057 4.7328 -5.1539 17 14 9.2823 3.1264 -3.5385 18 1 8.4853 1.9063 -3.2534 19 1 10.1685 2.8777 -4.7038 20 1 10.1082 3.4666 -2.3522 21 6 8.3365 6.3831 -0.5954 22 6 9.5767 5.6535 -1.1175 23 6 3.5970 3.5304 1.2420 24 6 2.0701 3.4478 1.3150 25 8 1.6633 2.0811 1.2215 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5140 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8535 0.9972 -1.0773 32 1 3.9996 0.8707 0.6933 33 1 5.7348 4.6683 -1.0570 34 1 7.9660 3.0158 -1.4842 35 1 8.1452 3.7491 0.1278 36 1 7.9927 4.1353 -5.8621 37 1 8.1084 7.3588 -1.0244 38 1 8.0894 6.2637 0.4595 39 1 10.1450 5.0544 -0.4058 40 1 10.1648 6.1488 -1.8902 41 1 4.0315 2.9989 2.0887 42 1 3.9070 4.5750 1.2687 43 1 1.6357 4.0135 0.4907 44 1 1.7281 3.8650 2.2622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431162174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:48 Heat of formation + Delta-G solvation = -83.172735 kcal Electronic energy + Delta-G solvation = -22814.623863 eV Core-core repulsion = 19538.775924 eV Total energy + Delta-G solvation = -3275.847939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17271 -38.64742 -37.03625 -34.16710 -33.60368 -33.34685 -32.22970 -29.92229 -27.41431 -25.89624 -24.78936 -23.72515 -21.91974 -21.58625 -20.64369 -19.69890 -19.04714 -17.05252 -16.56808 -16.37662 -15.97950 -15.23479 -15.06328 -14.72117 -14.51448 -14.16561 -13.80449 -13.74311 -13.49395 -13.11628 -12.97230 -12.82195 -12.30833 -12.10302 -11.92438 -11.86349 -11.41446 -11.19924 -11.12337 -11.00806 -10.75244 -10.67724 -10.61891 -10.42084 -10.28509 -9.81760 -9.63731 -9.23932 -9.16926 -8.80893 -8.56512 -8.33016 -6.22085 -4.25587 3.02318 3.24879 3.34967 3.40343 3.61459 3.71902 4.34195 4.58044 4.71961 4.73473 4.82339 4.94890 5.01070 5.04792 5.14481 5.22591 5.28837 5.35940 5.47235 5.57995 5.61735 5.63112 5.67093 5.81038 5.83368 5.91925 5.92505 6.00361 6.06820 6.09503 6.17465 6.18779 6.30304 6.40216 6.46488 6.66495 6.89361 7.02195 7.11701 7.15780 7.62352 8.13098 8.36185 8.72074 8.78841 9.41187 10.88891 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.004384 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.534040 B = 6384.922798 C = 6914.101765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.059 0.941 5 C -0.133 4.133 6 C -0.108 4.108 7 H 0.091 0.909 8 C 0.512 3.488 9 O -0.557 6.557 10 N -0.700 5.700 11 C 0.152 3.848 12 C -0.018 4.018 13 C -0.490 4.490 14 H 0.078 0.922 15 C 0.084 3.916 16 N -0.893 5.893 17 Si 0.868 3.132 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.251 1.251 21 C -0.180 4.180 22 C -0.186 4.186 23 C -0.143 4.143 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.406 0.594 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.560 -3.719 10.536 16.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.077 0.923 5 C -0.171 4.171 6 C -0.129 4.129 7 H 0.110 0.890 8 C 0.297 3.703 9 O -0.436 6.436 10 N -0.349 5.349 11 C 0.029 3.971 12 C -0.019 4.019 13 C -0.527 4.527 14 H 0.096 0.904 15 C -0.120 4.120 16 N -0.529 5.529 17 Si 0.696 3.304 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.175 1.175 21 C -0.217 4.217 22 C -0.224 4.224 23 C -0.181 4.181 24 C -0.012 4.012 25 O -0.297 6.297 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.241 0.759 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.185 -4.524 10.811 16.200 hybrid contribution 0.755 -0.194 -0.481 0.915 sum -10.430 -4.717 10.330 15.419 Atomic orbital electron populations 1.21717 0.95328 1.01381 1.02193 1.21541 0.96515 0.94385 1.02942 1.22164 0.93334 0.94096 0.87006 0.92278 1.22087 0.95482 0.95379 1.04165 1.21318 0.93057 0.98727 0.99835 0.89028 1.20438 0.89535 0.82126 0.78201 1.90644 1.69140 1.36949 1.46822 1.45917 1.08727 1.22329 1.57948 1.21103 0.79293 0.98522 0.98190 1.19601 0.96168 0.90282 0.95849 1.20241 1.31154 1.13882 0.87406 0.90387 1.24906 0.95257 0.97130 0.94706 1.69877 1.44048 1.38381 1.00619 0.87021 0.81832 0.82859 0.78663 1.20476 1.21826 1.17458 1.22788 1.03859 0.97548 0.97499 1.23036 0.91708 1.04743 1.02898 1.22132 0.97103 1.01726 0.97178 1.22536 0.93178 0.83269 1.02172 1.87903 1.78493 1.24630 1.38717 0.91994 0.92954 0.92898 0.90534 0.91034 0.90584 0.89700 0.75865 0.92650 0.93286 0.92421 0.89584 0.90932 0.91118 0.89231 0.90335 0.90269 0.92965 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.81 37.16 0.36 -0.95 16 2 C -0.12 -1.16 5.64 -26.73 -0.15 -1.31 16 3 C 0.09 1.04 2.64 -26.69 -0.07 0.97 16 4 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 5 C -0.13 -1.78 4.40 -26.59 -0.12 -1.90 16 6 C -0.11 -1.49 2.60 -91.59 -0.24 -1.73 16 7 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 8 C 0.51 9.30 6.85 -10.99 -0.08 9.23 16 9 O -0.56 -12.04 16.18 5.55 0.09 -11.95 16 10 N -0.70 -13.21 5.47 -60.29 -0.33 -13.54 16 11 C 0.15 3.25 5.10 -4.04 -0.02 3.23 16 12 C -0.02 -0.39 0.83 -155.66 -0.13 -0.52 16 13 C -0.49 -12.67 9.18 -34.44 -0.32 -12.99 16 14 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 15 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 16 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 17 Si 0.87 21.28 24.73 -169.99 -4.20 17.08 16 18 H -0.28 -6.98 7.05 56.52 0.40 -6.58 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 H -0.25 -5.81 5.94 56.52 0.34 -5.48 16 21 C -0.18 -3.40 9.96 -26.70 -0.27 -3.66 16 22 C -0.19 -3.76 8.39 -26.70 -0.22 -3.98 16 23 C -0.14 -1.67 5.40 -26.59 -0.14 -1.81 16 24 C 0.07 0.66 6.84 37.20 0.25 0.91 16 25 O -0.38 -4.53 9.94 -35.23 -0.35 -4.88 16 26 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.27 7.76 -51.93 -0.40 0.86 16 33 H 0.41 7.08 8.34 -40.82 -0.34 6.74 16 34 H 0.06 1.32 4.65 -51.93 -0.24 1.07 16 35 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 40 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -30.51 348.66 -7.78 -38.28 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.78 Total: 7.33 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.23 Total: -12.33 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.44 Total: -38.78 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.26 Total: -16.83 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.20 Total: 17.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.51 -7.78 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431162174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.892 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds